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The map label for this gene is atpD

Identifier: 114800518

GI number: 114800518

Start: 1957979

End: 1959406

Strand: Reverse

Name: atpD

Synonym: HNE_1892

Alternate gene names: 114800518

Gene position: 1959406-1957979 (Counterclockwise)

Preceding gene: 114800497

Following gene: 114798087

Centisome position: 52.89

GC content: 60.01

Gene sequence:

>1428_bases
ATGAGCACCCCCGCAAACGGCAAAGGCCGCATTTCCCAGGTTATCGGCGCCGTTGTCGACGTTGAGTTCGACGGCGAGCT
GCCATCGATCCTCAACGCCCTCGAGACCTTCAACAACGGCTCGCGCCTTGTTCTCGAAGTCGCCCAGCACCTCGGCGAGA
ATACTGTCCGCACGATCGCCATGGACTCGACCGAAGGTCTGGTTCGCGGGCAGCCCGTGTCGGACATCGGTACGCCGATC
ACGGTTCCAGTTGGCCCGGCCACTCTTGGCCGCATCATGAACGTCATCGGCGAGCCGATTGACGAGCGCGGCCCGGTCAA
TGCCGACACCTACATGCCGATCCACGCTCAGGCGCCTGCCTTCGTTGATCAGGCCACGGAATCCGAAGTACTCGTCACCG
GTATCAAGGTTATCGACCTTCTCTGCCCCTACGCGAAAGGCGGCAAGATCGGCCTCTTCGGCGGCGCCGGCGTGGGCAAG
ACGGTTCTGATCATGGAACTGGTGAACAACATTGCGAAACTGTTCGGCGGCTACTCGGTGTTTGCCGGCGTCGGCGAGCG
GACCCGTGAAGGTAACGACCTCTATCACGAGATGATCGAGTCGAACGTTATCAACCTCGAAGGCGAAAGCCGCATGTCGC
TGGTTTATGGCCAGATGAACGAGCCTCCAGGCGCCCGTGCACGGGTTGCTCTGACTGGTCTGACGCAAGCGGAATACTTC
CGCGATGTGGAAGGCAAGGACGTGCTGTTCTTCGTCGACAACATCTTCCGCTTCACCCAGGCAGGTTCGGAAGTGTCCGC
TCTGCTCGGCCGTATTCCTTCGGCCGTGGGTTACCAGCCGACGCTGGCGACTGACATGGGCGCGCTTCAGGAGCGCATCA
CCTCGACCAACAAAGGGTCGATCACGTCGGTCCAGGCCGTCTACGTTCCTGCGGACGACCTTACTGACCCTGCGCCTGCC
ACATCGTTTGCTCACCTTGACGCGACAACGGTTCTCAACCGCGCGATCTCCGAGAAGGGCATCTACCCTGCTGTGGACCC
GCTTGACTCCACCTCGCGTATTCTCGACCCTATGGTTGTCGGCGAAGAGCACTACGAAGTGGCTCGCGGCGTTCAGCAGA
TCCTGCAGAAGTACAAAGAGCTTCAGGACATCATCGCCATCCTCGGCATGGACGAGCTTTCGGAAGACGACAAAGTCACC
GTTGCGCGCGCTCGTAAAGTTGAGCGTTTCCTGTCGCAGCCATTCGACGTTGCCCAGGTCTTCACCGGTTCGCCAGGCGT
CCAGGTGAAACTCGAAGATACGATCAAAGGCTTCAAAGGCCTGATCAGCGGCGAGTTCGACCACCTGCCAGAGCCTGCCT
TCTACATGGTCGGCAACATCGAGGAAGCCAAAGCCAAAGCTGCGAAGCTGATGGCGGACGCTGCCTGA

Upstream 100 bases:

>100_bases
GCACAGATTACCAAGGAGCTGATCGAGATCATCTCCGGGGCTGAAGCCCTCTAACCGTTTAACCAGACCAGAATACTTCA
TCTCCCGAGGAGACGATCAG

Downstream 100 bases:

>100_bases
GGAATTAGTTGATGGCTGACAAGCTGCACTTCTCGCTCGTATCGCCCGCCCGAGAGCTGTTCTCGGGGCAGGTTGATCAT
GTGATCGCTCCGGGTACGGA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MSTPANGKGRISQVIGAVVDVEFDGELPSILNALETFNNGSRLVLEVAQHLGENTVRTIAMDSTEGLVRGQPVSDIGTPI
TVPVGPATLGRIMNVIGEPIDERGPVNADTYMPIHAQAPAFVDQATESEVLVTGIKVIDLLCPYAKGGKIGLFGGAGVGK
TVLIMELVNNIAKLFGGYSVFAGVGERTREGNDLYHEMIESNVINLEGESRMSLVYGQMNEPPGARARVALTGLTQAEYF
RDVEGKDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTNKGSITSVQAVYVPADDLTDPAPA
TSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRILDPMVVGEEHYEVARGVQQILQKYKELQDIIAILGMDELSEDDKVT
VARARKVERFLSQPFDVAQVFTGSPGVQVKLEDTIKGFKGLISGEFDHLPEPAFYMVGNIEEAKAKAAKLMADAA

Sequences:

>Translated_475_residues
MSTPANGKGRISQVIGAVVDVEFDGELPSILNALETFNNGSRLVLEVAQHLGENTVRTIAMDSTEGLVRGQPVSDIGTPI
TVPVGPATLGRIMNVIGEPIDERGPVNADTYMPIHAQAPAFVDQATESEVLVTGIKVIDLLCPYAKGGKIGLFGGAGVGK
TVLIMELVNNIAKLFGGYSVFAGVGERTREGNDLYHEMIESNVINLEGESRMSLVYGQMNEPPGARARVALTGLTQAEYF
RDVEGKDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTNKGSITSVQAVYVPADDLTDPAPA
TSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRILDPMVVGEEHYEVARGVQQILQKYKELQDIIAILGMDELSEDDKVT
VARARKVERFLSQPFDVAQVFTGSPGVQVKLEDTIKGFKGLISGEFDHLPEPAFYMVGNIEEAKAKAAKLMADAA
>Mature_474_residues
STPANGKGRISQVIGAVVDVEFDGELPSILNALETFNNGSRLVLEVAQHLGENTVRTIAMDSTEGLVRGQPVSDIGTPIT
VPVGPATLGRIMNVIGEPIDERGPVNADTYMPIHAQAPAFVDQATESEVLVTGIKVIDLLCPYAKGGKIGLFGGAGVGKT
VLIMELVNNIAKLFGGYSVFAGVGERTREGNDLYHEMIESNVINLEGESRMSLVYGQMNEPPGARARVALTGLTQAEYFR
DVEGKDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTNKGSITSVQAVYVPADDLTDPAPAT
SFAHLDATTVLNRAISEKGIYPAVDPLDSTSRILDPMVVGEEHYEVARGVQQILQKYKELQDIIAILGMDELSEDDKVTV
ARARKVERFLSQPFDVAQVFTGSPGVQVKLEDTIKGFKGLISGEFDHLPEPAFYMVGNIEEAKAKAAKLMADAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=463, Percent_Identity=79.0496760259179, Blast_Score=746, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=327, Percent_Identity=27.5229357798165, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI19913428, Length=365, Percent_Identity=26.3013698630137, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI19913426, Length=364, Percent_Identity=24.4505494505494, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI50345984, Length=296, Percent_Identity=25, Blast_Score=96, Evalue=8e-20,
Organism=Homo sapiens, GI4757810, Length=296, Percent_Identity=25, Blast_Score=96, Evalue=8e-20,
Organism=Escherichia coli, GI1790170, Length=463, Percent_Identity=70.6263498920086, Blast_Score=653, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=330, Percent_Identity=31.5151515151515, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790172, Length=396, Percent_Identity=24.2424242424242, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI25144756, Length=470, Percent_Identity=75.531914893617, Blast_Score=734, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=328, Percent_Identity=28.6585365853659, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17510931, Length=347, Percent_Identity=26.5129682997118, Blast_Score=115, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=400, Percent_Identity=25.25, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=319, Percent_Identity=22.884012539185, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI71988063, Length=319, Percent_Identity=22.884012539185, Blast_Score=92, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=271, Percent_Identity=22.5092250922509, Blast_Score=75, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322581, Length=462, Percent_Identity=74.8917748917749, Blast_Score=704, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=375, Percent_Identity=27.4666666666667, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=370, Percent_Identity=25.6756756756757, Blast_Score=104, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=216, Percent_Identity=28.2407407407407, Blast_Score=81, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24638766, Length=468, Percent_Identity=77.3504273504274, Blast_Score=735, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=467, Percent_Identity=72.3768736616702, Blast_Score=677, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=73.6263736263736, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI20129479, Length=316, Percent_Identity=27.5316455696203, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24583992, Length=326, Percent_Identity=28.5276073619632, Blast_Score=115, Evalue=9e-26,
Organism=Drosophila melanogaster, GI24583988, Length=305, Percent_Identity=29.8360655737705, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24583986, Length=305, Percent_Identity=29.8360655737705, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24583984, Length=305, Percent_Identity=29.8360655737705, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI281361666, Length=356, Percent_Identity=26.123595505618, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24646341, Length=356, Percent_Identity=26.123595505618, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI17136796, Length=356, Percent_Identity=26.123595505618, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24658560, Length=319, Percent_Identity=23.5109717868339, Blast_Score=90, Evalue=3e-18,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_HYPNA (Q0C100)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_760593.1
- ProteinModelPortal:   Q0C100
- SMR:   Q0C100
- STRING:   Q0C100
- GeneID:   4288863
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_1892
- NMPDR:   fig|228405.5.peg.1821
- TIGR:   HNE_1892
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- PhylomeDB:   Q0C100
- ProtClustDB:   PRK09280
- BioCyc:   HNEP81032:HNE_1892-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 50901; Mature: 50769

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPANGKGRISQVIGAVVDVEFDGELPSILNALETFNNGSRLVLEVAQHLGENTVRTIA
CCCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEE
MDSTEGLVRGQPVSDIGTPITVPVGPATLGRIMNVIGEPIDERGPVNADTYMPIHAQAPA
ECCCCCCCCCCCHHHCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCH
FVDQATESEVLVTGIKVIDLLCPYAKGGKIGLFGGAGVGKTVLIMELVNNIAKLFGGYSV
HHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHH
FAGVGERTREGNDLYHEMIESNVINLEGESRMSLVYGQMNEPPGARARVALTGLTQAEYF
HHCCCCCCCCCHHHHHHHHHCCEEECCCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHH
RDVEGKDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTNKGS
HCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCC
ITSVQAVYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRILDPMVV
CEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCHHHC
GEEHYEVARGVQQILQKYKELQDIIAILGMDELSEDDKVTVARARKVERFLSQPFDVAQV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHCCCCCHHHH
FTGSPGVQVKLEDTIKGFKGLISGEFDHLPEPAFYMVGNIEEAKAKAAKLMADAA
HCCCCCCEEEEHHHHHHHHHHHCCCHHCCCCCCEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STPANGKGRISQVIGAVVDVEFDGELPSILNALETFNNGSRLVLEVAQHLGENTVRTIA
CCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEE
MDSTEGLVRGQPVSDIGTPITVPVGPATLGRIMNVIGEPIDERGPVNADTYMPIHAQAPA
ECCCCCCCCCCCHHHCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCH
FVDQATESEVLVTGIKVIDLLCPYAKGGKIGLFGGAGVGKTVLIMELVNNIAKLFGGYSV
HHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHH
FAGVGERTREGNDLYHEMIESNVINLEGESRMSLVYGQMNEPPGARARVALTGLTQAEYF
HHCCCCCCCCCHHHHHHHHHCCEEECCCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHH
RDVEGKDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTNKGS
HCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCC
ITSVQAVYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRILDPMVV
CEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCHHHC
GEEHYEVARGVQQILQKYKELQDIIAILGMDELSEDDKVTVARARKVERFLSQPFDVAQV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHCCCCCHHHH
FTGSPGVQVKLEDTIKGFKGLISGEFDHLPEPAFYMVGNIEEAKAKAAKLMADAA
HCCCCCCEEEEHHHHHHHHHHHCCCHHCCCCCCEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA