| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is lepA
Identifier: 114800355
GI number: 114800355
Start: 122692
End: 124506
Strand: Reverse
Name: lepA
Synonym: HNE_0139
Alternate gene names: 114800355
Gene position: 124506-122692 (Counterclockwise)
Preceding gene: 114799614
Following gene: 114798778
Centisome position: 3.36
GC content: 61.43
Gene sequence:
>1815_bases ATGCGCCCGATGACACCGCGCGATAAAATCCGTAATTTTTCGATCATTGCCCATATCGACCATGGGAAATCGACCCTAGC CGACCGCCTGATTCAGGCCTGCGGCGGCCTCACTGACCGTGAAATGAGTGAGCAGGTGCTCGACTCGATGGATATCGAGA AAGAGCGCGGCATCACCATCAAGGCCCAGACCGTGCGCCTGTCCTATACGGCCAGCGATGGGGAAACCTATACGCTGAAC CTCATGGACACCCCCGGACACGTCGACTTTGCCTATGAAGTCTCCCGGTGTCTGGCCGCCTGCGAAGGCTCTCTGCTGGT GGTGGACGCCTCGCAAGGCGTGGAAGCCCAGACGCTCGCCAACGTCTACCAGGCCATCGACCAGAACCATGAGATCGTGC CGGTCCTCAACAAGATCGACCTGCCTGCCGCCGATGTGGACCGGGTTAAGGAGCAGATCGAGGAAATCATCGGCCTTGAC GCCTCTGACGCCGTGCAGATTTCGGCCAAGACGGGCCTTGGCATTCCCGACGTGCTCGAAGCCATCGTCAACCGCCTGCC CCCGCCGCGCGGCGGCGACCACACCGCGCCGCTGAAAGCCGCCCTCGTGGACGCCTATTACGACCCCTATCTCGGCGTCG TCGTCATCGTGCGCGTGCATGAAGGCATCCTGAAGAAGAAACAGACGATCCGCATGATGCGCACCGGCGGCGTCTACGAG ATCGACAAGGTCGGCACGTTCAATCCCAAGCTCACCGAAGCCGATGCTCTCGGCCCCGGCGAGGTCGGCTATTTCGTCGC CTCGATCAAGGAAGTCGGCGATTGCTCGATCGGTGACACGATCACCGAAGACAAACGCCCGACCGACAAAGCCCTGCCCG GCTATAAAGATGTGCAGCCGGTCGTCTTCTGCGGTCTCTTCCCGATGGATGCAGGCGACTTTGACGACCTGCGCGCCGCG ATGGGCAAGCTGCGCCTCAATGATGCGTCCTTCACCTGGGAGATGGAAACCTCCGCCGCGCTCGGCATGGGCTTCCGCTG CGGCTTCCTCGGCCTGCTCCACCTCGAAATCATCCAGGAGCGCCTCTCCCGCGAGTTTGACCTCGACCTCATCGCGACCG CGCCCAGTGTTGTCTATGAAATGTCGATGACCGACGGCACCGAGATCGAGCTGCACAACCCGGCAGACATGCCCGACGTT GTCCGCATCACCGAAATCCGTGAGCCGTGGATTGCCGCGACGATCTACACGCCCGACGAATATCTCGGCTCCATCCTGAA ACTCTGCCAGGATCGCCGCGGTATCCAGATCGAGCTATCCTACGTAGGCGGACGGGCCTGCGTGAAATACGAACTGCCCC TCAACGAGGTGGTGTTCGACTTTTACGACCGCCTGAAATCCATCTCGCGCGGCTATGCGAGCTTTGACTATACCCTCATC GGCCACCGCGCCGAAAACCTCGTCAAGCTGCAGATCCTCGTCAATGAGGAGCCTGTCGACGCGCTCGCCATGCTCGTCCA CCGCGACCGCGCCGAAAGCCGGGGCCGTCAGATGTGCGAGCGCCTCAAAGAGCTGATCCCACGCCAGATGTTCAAAATCC CGATCCAGGCGGCCATCGGCGGCCGGGTCGTCGCGCGCGAAACCATCAGTGCCATGAGGAAAGACGTGACCGCCAAATGC TATGGCGGCGACGCCACGCGCAAACGCAAACTCCTCGACAAACAGGCCGCCGGCAAGAAACGCATGCGCCAGTTCGGCAA GGTGGAAATCCCGCAGGAAGCGTTTGTGGCCGCGCTCAGGATGGATGGGGATTGA
Upstream 100 bases:
>100_bases GGGGAAAACGAAGGCTAACTGACGTTTATGGCACTCGCAAGGCGAAGACCCACATCCCGCCCGCCTGCGCCCACTTTCCC AGCGCGCAAGTGCCCGCTAT
Downstream 100 bases:
>100_bases TCCCCATCCAACGCCCGCCTCAGCTCACCAGCAGATAAATCGCCCGCCCCGCCAGCGGGAACAGCATCAGCGTGGACACC ACGAAAAGGTAAAACCGAAT
Product: GTP-binding protein LepA
Products: NA
Alternate protein names: EF-4; Ribosomal back-translocase LepA
Number of amino acids: Translated: 604; Mature: 604
Protein sequence:
>604_residues MRPMTPRDKIRNFSIIAHIDHGKSTLADRLIQACGGLTDREMSEQVLDSMDIEKERGITIKAQTVRLSYTASDGETYTLN LMDTPGHVDFAYEVSRCLAACEGSLLVVDASQGVEAQTLANVYQAIDQNHEIVPVLNKIDLPAADVDRVKEQIEEIIGLD ASDAVQISAKTGLGIPDVLEAIVNRLPPPRGGDHTAPLKAALVDAYYDPYLGVVVIVRVHEGILKKKQTIRMMRTGGVYE IDKVGTFNPKLTEADALGPGEVGYFVASIKEVGDCSIGDTITEDKRPTDKALPGYKDVQPVVFCGLFPMDAGDFDDLRAA MGKLRLNDASFTWEMETSAALGMGFRCGFLGLLHLEIIQERLSREFDLDLIATAPSVVYEMSMTDGTEIELHNPADMPDV VRITEIREPWIAATIYTPDEYLGSILKLCQDRRGIQIELSYVGGRACVKYELPLNEVVFDFYDRLKSISRGYASFDYTLI GHRAENLVKLQILVNEEPVDALAMLVHRDRAESRGRQMCERLKELIPRQMFKIPIQAAIGGRVVARETISAMRKDVTAKC YGGDATRKRKLLDKQAAGKKRMRQFGKVEIPQEAFVAALRMDGD
Sequences:
>Translated_604_residues MRPMTPRDKIRNFSIIAHIDHGKSTLADRLIQACGGLTDREMSEQVLDSMDIEKERGITIKAQTVRLSYTASDGETYTLN LMDTPGHVDFAYEVSRCLAACEGSLLVVDASQGVEAQTLANVYQAIDQNHEIVPVLNKIDLPAADVDRVKEQIEEIIGLD ASDAVQISAKTGLGIPDVLEAIVNRLPPPRGGDHTAPLKAALVDAYYDPYLGVVVIVRVHEGILKKKQTIRMMRTGGVYE IDKVGTFNPKLTEADALGPGEVGYFVASIKEVGDCSIGDTITEDKRPTDKALPGYKDVQPVVFCGLFPMDAGDFDDLRAA MGKLRLNDASFTWEMETSAALGMGFRCGFLGLLHLEIIQERLSREFDLDLIATAPSVVYEMSMTDGTEIELHNPADMPDV VRITEIREPWIAATIYTPDEYLGSILKLCQDRRGIQIELSYVGGRACVKYELPLNEVVFDFYDRLKSISRGYASFDYTLI GHRAENLVKLQILVNEEPVDALAMLVHRDRAESRGRQMCERLKELIPRQMFKIPIQAAIGGRVVARETISAMRKDVTAKC YGGDATRKRKLLDKQAAGKKRMRQFGKVEIPQEAFVAALRMDGD >Mature_604_residues MRPMTPRDKIRNFSIIAHIDHGKSTLADRLIQACGGLTDREMSEQVLDSMDIEKERGITIKAQTVRLSYTASDGETYTLN LMDTPGHVDFAYEVSRCLAACEGSLLVVDASQGVEAQTLANVYQAIDQNHEIVPVLNKIDLPAADVDRVKEQIEEIIGLD ASDAVQISAKTGLGIPDVLEAIVNRLPPPRGGDHTAPLKAALVDAYYDPYLGVVVIVRVHEGILKKKQTIRMMRTGGVYE IDKVGTFNPKLTEADALGPGEVGYFVASIKEVGDCSIGDTITEDKRPTDKALPGYKDVQPVVFCGLFPMDAGDFDDLRAA MGKLRLNDASFTWEMETSAALGMGFRCGFLGLLHLEIIQERLSREFDLDLIATAPSVVYEMSMTDGTEIELHNPADMPDV VRITEIREPWIAATIYTPDEYLGSILKLCQDRRGIQIELSYVGGRACVKYELPLNEVVFDFYDRLKSISRGYASFDYTLI GHRAENLVKLQILVNEEPVDALAMLVHRDRAESRGRQMCERLKELIPRQMFKIPIQAAIGGRVVARETISAMRKDVTAKC YGGDATRKRKLLDKQAAGKKRMRQFGKVEIPQEAFVAALRMDGD
Specific function: Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- transloc
COG id: COG0481
COG function: function code M; Membrane GTPase LepA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. LepA subfamily
Homologues:
Organism=Homo sapiens, GI157426893, Length=604, Percent_Identity=47.3509933774834, Blast_Score=604, Evalue=1e-173, Organism=Homo sapiens, GI94966754, Length=133, Percent_Identity=46.6165413533835, Blast_Score=115, Evalue=2e-25, Organism=Homo sapiens, GI25306283, Length=153, Percent_Identity=44.4444444444444, Blast_Score=105, Evalue=9e-23, Organism=Homo sapiens, GI19923640, Length=153, Percent_Identity=44.4444444444444, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI25306287, Length=153, Percent_Identity=44.4444444444444, Blast_Score=105, Evalue=2e-22, Organism=Homo sapiens, GI4503483, Length=149, Percent_Identity=40.2684563758389, Blast_Score=102, Evalue=7e-22, Organism=Homo sapiens, GI18390331, Length=165, Percent_Identity=35.1515151515151, Blast_Score=97, Evalue=5e-20, Organism=Homo sapiens, GI310132016, Length=110, Percent_Identity=42.7272727272727, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI310110807, Length=110, Percent_Identity=42.7272727272727, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI310123363, Length=110, Percent_Identity=42.7272727272727, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI217272894, Length=161, Percent_Identity=33.5403726708075, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI217272892, Length=161, Percent_Identity=33.5403726708075, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI94966752, Length=97, Percent_Identity=41.2371134020619, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI53729339, Length=230, Percent_Identity=27.3913043478261, Blast_Score=68, Evalue=3e-11, Organism=Homo sapiens, GI53729337, Length=230, Percent_Identity=27.3913043478261, Blast_Score=68, Evalue=3e-11, Organism=Escherichia coli, GI1788922, Length=596, Percent_Identity=57.8859060402685, Blast_Score=701, Evalue=0.0, Organism=Escherichia coli, GI48994988, Length=507, Percent_Identity=29.3885601577909, Blast_Score=166, Evalue=4e-42, Organism=Escherichia coli, GI1789738, Length=167, Percent_Identity=34.7305389221557, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1790835, Length=153, Percent_Identity=32.0261437908497, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1789559, Length=232, Percent_Identity=31.0344827586207, Blast_Score=76, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17557151, Length=617, Percent_Identity=39.708265802269, Blast_Score=465, Evalue=1e-131, Organism=Caenorhabditis elegans, GI17556745, Length=531, Percent_Identity=25.4237288135593, Blast_Score=112, Evalue=4e-25, Organism=Caenorhabditis elegans, GI71988811, Length=136, Percent_Identity=37.5, Blast_Score=96, Evalue=5e-20, Organism=Caenorhabditis elegans, GI71988819, Length=136, Percent_Identity=37.5, Blast_Score=96, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17506493, Length=161, Percent_Identity=36.0248447204969, Blast_Score=92, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17533571, Length=147, Percent_Identity=34.6938775510204, Blast_Score=89, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17552882, Length=171, Percent_Identity=30.9941520467836, Blast_Score=83, Evalue=5e-16, Organism=Caenorhabditis elegans, GI32566303, Length=305, Percent_Identity=24.9180327868852, Blast_Score=74, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323320, Length=604, Percent_Identity=44.3708609271523, Blast_Score=523, Evalue=1e-149, Organism=Saccharomyces cerevisiae, GI6323098, Length=202, Percent_Identity=36.1386138613861, Blast_Score=110, Evalue=9e-25, Organism=Saccharomyces cerevisiae, GI6324707, Length=157, Percent_Identity=38.8535031847134, Blast_Score=108, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6320593, Length=157, Percent_Identity=38.8535031847134, Blast_Score=108, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6322359, Length=117, Percent_Identity=38.4615384615385, Blast_Score=94, Evalue=9e-20, Organism=Saccharomyces cerevisiae, GI6324166, Length=170, Percent_Identity=32.9411764705882, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI78706572, Length=604, Percent_Identity=43.3774834437086, Blast_Score=514, Evalue=1e-146, Organism=Drosophila melanogaster, GI28574573, Length=139, Percent_Identity=41.726618705036, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24582462, Length=165, Percent_Identity=35.1515151515151, Blast_Score=96, Evalue=7e-20, Organism=Drosophila melanogaster, GI24585711, Length=153, Percent_Identity=35.2941176470588, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24585713, Length=153, Percent_Identity=35.2941176470588, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24585709, Length=153, Percent_Identity=35.2941176470588, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI21357743, Length=160, Percent_Identity=34.375, Blast_Score=89, Evalue=6e-18, Organism=Drosophila melanogaster, GI221458488, Length=143, Percent_Identity=39.1608391608392, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI281363316, Length=286, Percent_Identity=29.3706293706294, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI17864358, Length=286, Percent_Identity=29.3706293706294, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI19921738, Length=235, Percent_Identity=28.0851063829787, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI28572034, Length=236, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): LEPA_HYPNA (Q0C5X0)
Other databases:
- EMBL: CP000158 - RefSeq: YP_758873.1 - ProteinModelPortal: Q0C5X0 - SMR: Q0C5X0 - STRING: Q0C5X0 - GeneID: 4288718 - GenomeReviews: CP000158_GR - KEGG: hne:HNE_0139 - NMPDR: fig|228405.5.peg.137 - TIGR: HNE_0139 - eggNOG: COG0481 - HOGENOM: HBG286375 - OMA: YDSYRGV - PhylomeDB: Q0C5X0 - ProtClustDB: PRK05433 - BioCyc: HNEP81032:HNE_0139-MONOMER - GO: GO:0006412 - HAMAP: MF_00071 - InterPro: IPR009022 - InterPro: IPR006297 - InterPro: IPR013842 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 - Gene3D: G3DSA:3.30.70.240 - PRINTS: PR00315 - SMART: SM00838 - TIGRFAMs: TIGR01393 - TIGRFAMs: TIGR00231
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF06421 LepA_C; SSF54980 EFG_III_V; SSF50447 Translat_factor
EC number: NA
Molecular weight: Translated: 66963; Mature: 66963
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPMTPRDKIRNFSIIAHIDHGKSTLADRLIQACGGLTDREMSEQVLDSMDIEKERGITI CCCCCCHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCEE KAQTVRLSYTASDGETYTLNLMDTPGHVDFAYEVSRCLAACEGSLLVVDASQGVEAQTLA EEEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH NVYQAIDQNHEIVPVLNKIDLPAADVDRVKEQIEEIIGLDASDAVQISAKTGLGIPDVLE HHHHHHCCCCCEEEEHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH AIVNRLPPPRGGDHTAPLKAALVDAYYDPYLGVVVIVRVHEGILKKKQTIRMMRTGGVYE HHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE IDKVGTFNPKLTEADALGPGEVGYFVASIKEVGDCSIGDTITEDKRPTDKALPGYKDVQP ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC VVFCGLFPMDAGDFDDLRAAMGKLRLNDASFTWEMETSAALGMGFRCGFLGLLHLEIIQE EEEEEECCCCCCCHHHHHHHHHHEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHH RLSREFDLDLIATAPSVVYEMSMTDGTEIELHNPADMPDVVRITEIREPWIAATIYTPDE HHCCCCCCEEEECCCCCEEEEECCCCCEEEECCCCCCCCCEEHHHCCCCEEEEEEECCHH YLGSILKLCQDRRGIQIELSYVGGRACVKYELPLNEVVFDFYDRLKSISRGYASFDYTLI HHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEE GHRAENLVKLQILVNEEPVDALAMLVHRDRAESRGRQMCERLKELIPRQMFKIPIQAAIG CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC GRVVARETISAMRKDVTAKCYGGDATRKRKLLDKQAAGKKRMRQFGKVEIPQEAFVAALR CCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC MDGD CCCC >Mature Secondary Structure MRPMTPRDKIRNFSIIAHIDHGKSTLADRLIQACGGLTDREMSEQVLDSMDIEKERGITI CCCCCCHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCEE KAQTVRLSYTASDGETYTLNLMDTPGHVDFAYEVSRCLAACEGSLLVVDASQGVEAQTLA EEEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH NVYQAIDQNHEIVPVLNKIDLPAADVDRVKEQIEEIIGLDASDAVQISAKTGLGIPDVLE HHHHHHCCCCCEEEEHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH AIVNRLPPPRGGDHTAPLKAALVDAYYDPYLGVVVIVRVHEGILKKKQTIRMMRTGGVYE HHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE IDKVGTFNPKLTEADALGPGEVGYFVASIKEVGDCSIGDTITEDKRPTDKALPGYKDVQP ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC VVFCGLFPMDAGDFDDLRAAMGKLRLNDASFTWEMETSAALGMGFRCGFLGLLHLEIIQE EEEEEECCCCCCCHHHHHHHHHHEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHH RLSREFDLDLIATAPSVVYEMSMTDGTEIELHNPADMPDVVRITEIREPWIAATIYTPDE HHCCCCCCEEEECCCCCEEEEECCCCCEEEECCCCCCCCCEEHHHCCCCEEEEEEECCHH YLGSILKLCQDRRGIQIELSYVGGRACVKYELPLNEVVFDFYDRLKSISRGYASFDYTLI HHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEE GHRAENLVKLQILVNEEPVDALAMLVHRDRAESRGRQMCERLKELIPRQMFKIPIQAAIG CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC GRVVARETISAMRKDVTAKCYGGDATRKRKLLDKQAAGKKRMRQFGKVEIPQEAFVAALR CCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC MDGD CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA