| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is uidR [C]
Identifier: 114800317
GI number: 114800317
Start: 2767979
End: 2768662
Strand: Direct
Name: uidR [C]
Synonym: HNE_2607
Alternate gene names: 114800317
Gene position: 2767979-2768662 (Clockwise)
Preceding gene: 114799324
Following gene: 114797415
Centisome position: 74.71
GC content: 62.57
Gene sequence:
>684_bases ATGGCCGCCAAATCCACCTCTACAAAAGCCAATGGCAAATCCGCAACCCCTTCCAAAGGTGGCGCAAAGAACGGCGAAAA GGCAACCGTCACAAAGCCTGAGGAGCCCATCCGCCGCCCCCGCGTGCGCGATGCCCGGCCGAAAATCGAGCGCGCGGCGC TGGAGCTGTTTGTGACGGTCGGGGTGGACGCTGCCACCACACGGGAGATTGCCGAAAGCGCGCAGGTCTCCGAAGGCGCG CTTTACCGCCACTACAAGGGCAAGGATGAACTCGCCCTTGCCCTGTTCATGGAAACGCACAATCGCCTCTCCGCGATGCT GGCCGAAGCCCTGGGTGGCCAGGGCGGCCTTGATGAAAAGGTCCATGCCGCCGTCGCTGCCTATTGTTCTCTGGCAGACG AGGATTTCCTTCTGTTCTCGTTCCACCTCGTCTCGCTGAACAAATACCTGCCCTATGACAAACGCCGCGCAGACGATCCG GTTTCCATCACGGAAGGGATCATCATGGACCTGATGGACGCTGCCGCCATCCCTAAGGGCGACCCCGCCCTGAAGGCCGC CATGGCGCTGGGCGTCGTCATGCAGGCGGGGCAAAACAAGATCTATAACCGCCTGCCCGGCCCACTCTCGCGCCACGCCC CGGCGCTGGCCCGCGCTGTTCTGGCCGTTCTCAAGTCCAACTGA
Upstream 100 bases:
>100_bases CTCAGACCAAAGATAAAAATTGATTAGTGAGCGATTGATCACTTGCTATTACTGCGCCCTCATGCTACATCCGGCCTGAA CACACGGGAGCCCCTGCCTC
Downstream 100 bases:
>100_bases TCGTTCCCTCTACGGAGCATATCCACATGCGCGGCACTCTCTTCCAGGTGGCCTATTGGGTCCTCTCGATCTTCTATGTC CTCGTTTCACTGCCCTTCCT
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MAAKSTSTKANGKSATPSKGGAKNGEKATVTKPEEPIRRPRVRDARPKIERAALELFVTVGVDAATTREIAESAQVSEGA LYRHYKGKDELALALFMETHNRLSAMLAEALGGQGGLDEKVHAAVAAYCSLADEDFLLFSFHLVSLNKYLPYDKRRADDP VSITEGIIMDLMDAAAIPKGDPALKAAMALGVVMQAGQNKIYNRLPGPLSRHAPALARAVLAVLKSN
Sequences:
>Translated_227_residues MAAKSTSTKANGKSATPSKGGAKNGEKATVTKPEEPIRRPRVRDARPKIERAALELFVTVGVDAATTREIAESAQVSEGA LYRHYKGKDELALALFMETHNRLSAMLAEALGGQGGLDEKVHAAVAAYCSLADEDFLLFSFHLVSLNKYLPYDKRRADDP VSITEGIIMDLMDAAAIPKGDPALKAAMALGVVMQAGQNKIYNRLPGPLSRHAPALARAVLAVLKSN >Mature_226_residues AAKSTSTKANGKSATPSKGGAKNGEKATVTKPEEPIRRPRVRDARPKIERAALELFVTVGVDAATTREIAESAQVSEGAL YRHYKGKDELALALFMETHNRLSAMLAEALGGQGGLDEKVHAAVAAYCSLADEDFLLFSFHLVSLNKYLPYDKRRADDPV SITEGIIMDLMDAAAIPKGDPALKAAMALGVVMQAGQNKIYNRLPGPLSRHAPALARAVLAVLKSN
Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24237; Mature: 24106
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAKSTSTKANGKSATPSKGGAKNGEKATVTKPEEPIRRPRVRDARPKIERAALELFVTV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHC GVDAATTREIAESAQVSEGALYRHYKGKDELALALFMETHNRLSAMLAEALGGQGGLDEK CCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH VHAAVAAYCSLADEDFLLFSFHLVSLNKYLPYDKRRADDPVSITEGIIMDLMDAAAIPKG HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCC DPALKAAMALGVVMQAGQNKIYNRLPGPLSRHAPALARAVLAVLKSN CHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AAKSTSTKANGKSATPSKGGAKNGEKATVTKPEEPIRRPRVRDARPKIERAALELFVTV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHC GVDAATTREIAESAQVSEGALYRHYKGKDELALALFMETHNRLSAMLAEALGGQGGLDEK CCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH VHAAVAAYCSLADEDFLLFSFHLVSLNKYLPYDKRRADDPVSITEGIIMDLMDAAAIPKG HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCC DPALKAAMALGVVMQAGQNKIYNRLPGPLSRHAPALARAVLAVLKSN CHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA