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The map label for this gene is rarA [H]

Identifier: 114800296

GI number: 114800296

Start: 2801740

End: 2803050

Strand: Reverse

Name: rarA [H]

Synonym: HNE_2642

Alternate gene names: 114800296

Gene position: 2803050-2801740 (Counterclockwise)

Preceding gene: 114797410

Following gene: 114799267

Centisome position: 75.66

GC content: 65.45

Gene sequence:

>1311_bases
ATGAGCGATCTTTTTTCCGCCGCCGGCCTTGAGGATGACGCGCCCCGCCCGCTGGCGGACCGGTTGCGCCCCAAGAAATT
GTCCGATGTTGTCGGGCAGGGGCATCTGATCGGGCCCGATGGCCCCATCGGCGCCATGCTGCGCAATGGGCGGCTCGTCT
CGATGATCCTCTGGGGCCCGCCGGGCGTGGGCAAGACGACGATTGCCCGGCTGCTGGCGCAGGAAACCGACCTTGAGTTC
GAGGCCCTCTCGGCCATCTTCTCCGGCGTCAAGGATCTGCGCGCCGCCTTCGAGAAGGCCGAGGCCCGCCGCCGCGTCGG
CAAGGGCACGCTCCTCTTCGTGGACGAGATCCACCGCTTCAACCGCTCCCAGCAGGATGGCTTCCTCCCCTTCGTGGAGA
GCGGCACGGTCACGCTGGTGGGCGCCACGACCGAGAACCCCAGCTTCGAACTCAACGGCGCTTTGCTTTCGCGCTGTCAG
GTGATGGTCCTCCGCCGTCTCGAGGATGATGATCTGCGCGAGTTGATGGCGCGCGCCGAACGGGCCATGGGCCGCCGCCT
GCCCGCCATGCCCGATGCGCGCGAAGCCCTCATTCGCATGGCCGATGGCGACGGGCGTTACCTGCTGAACCTCGTCGAGC
AGGCCTACGCCATGCGCGGCGAGCCGGGCCTCCTCAGCCTGGAGGAAATCGCCACCGGCCTCCAGAAACGCGCCGCCGCT
TACGACAAGGACCGTGAGGAACATTACAACCTCATCTCCGCTCTGCACAAATCCGTGCGCGGATCAGATCCCGACGCGGC
GCTCTACTGGTTCGCGCGGATGCTGGAAGGCGGCGAAGATCCCCTCTTCATCGCCCGCCGCCTCATCCGCATGGCGAGTG
AAGACATTGGCCTGGCTGATCCCACCGCCTTGATGATCTGCGGGGAAGCGGCCCGGTCCTATGAGCGTCTCGGCTCGCCC
GAAGGCGAGCTGATGCTCGCCCACGCGGTTATTCATCTGGCGACCGCGCCCAAATCCAATGCCGCCTACGTCGCCTACAA
GGCCGCCCGCCGCGCCGCATCTGAAACCGGTAGCCTGATGCCCCCCAAACACATCCTCAACGCGCCGACCTCGATGATGA
AAGATCAGGGCTATGGCTCCGGCTATGTCTATGATCACGATACGGAAGAAGGTGTCTCCGGCCAGAACTACTTCCCCGAC
GCCATGGGCCGCCAACAGTACTACACGCCCAAGGGCGCAGGCCGCGAACGCCCCATCGCTGACTGGCTGAAAGAAATCGC
CGCCCTTCGCAAATCCCGCCTCGATGAGTGA

Upstream 100 bases:

>100_bases
CGCCGCAGGCCATATCAGAGGGTGTAACAGTCAGGGTCATTTTATATTTCCTCCCAATCCCCACCTTACCACGCCGCCAC
CAAAGTCCTAGAAGACACCC

Downstream 100 bases:

>100_bases
ACCCGCGCCCCTGATTCCGCCGGACCCGCAATCTGCCAGGCAGTTGATCGCCAGCCAGTTCCCCGGCCTCGCAGGCAGAC
ACATCTGCCCTGAGGTTTCC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSDLFSAAGLEDDAPRPLADRLRPKKLSDVVGQGHLIGPDGPIGAMLRNGRLVSMILWGPPGVGKTTIARLLAQETDLEF
EALSAIFSGVKDLRAAFEKAEARRRVGKGTLLFVDEIHRFNRSQQDGFLPFVESGTVTLVGATTENPSFELNGALLSRCQ
VMVLRRLEDDDLRELMARAERAMGRRLPAMPDAREALIRMADGDGRYLLNLVEQAYAMRGEPGLLSLEEIATGLQKRAAA
YDKDREEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPLFIARRLIRMASEDIGLADPTALMICGEAARSYERLGSP
EGELMLAHAVIHLATAPKSNAAYVAYKAARRAASETGSLMPPKHILNAPTSMMKDQGYGSGYVYDHDTEEGVSGQNYFPD
AMGRQQYYTPKGAGRERPIADWLKEIAALRKSRLDE

Sequences:

>Translated_436_residues
MSDLFSAAGLEDDAPRPLADRLRPKKLSDVVGQGHLIGPDGPIGAMLRNGRLVSMILWGPPGVGKTTIARLLAQETDLEF
EALSAIFSGVKDLRAAFEKAEARRRVGKGTLLFVDEIHRFNRSQQDGFLPFVESGTVTLVGATTENPSFELNGALLSRCQ
VMVLRRLEDDDLRELMARAERAMGRRLPAMPDAREALIRMADGDGRYLLNLVEQAYAMRGEPGLLSLEEIATGLQKRAAA
YDKDREEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPLFIARRLIRMASEDIGLADPTALMICGEAARSYERLGSP
EGELMLAHAVIHLATAPKSNAAYVAYKAARRAASETGSLMPPKHILNAPTSMMKDQGYGSGYVYDHDTEEGVSGQNYFPD
AMGRQQYYTPKGAGRERPIADWLKEIAALRKSRLDE
>Mature_435_residues
SDLFSAAGLEDDAPRPLADRLRPKKLSDVVGQGHLIGPDGPIGAMLRNGRLVSMILWGPPGVGKTTIARLLAQETDLEFE
ALSAIFSGVKDLRAAFEKAEARRRVGKGTLLFVDEIHRFNRSQQDGFLPFVESGTVTLVGATTENPSFELNGALLSRCQV
MVLRRLEDDDLRELMARAERAMGRRLPAMPDAREALIRMADGDGRYLLNLVEQAYAMRGEPGLLSLEEIATGLQKRAAAY
DKDREEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPLFIARRLIRMASEDIGLADPTALMICGEAARSYERLGSPE
GELMLAHAVIHLATAPKSNAAYVAYKAARRAASETGSLMPPKHILNAPTSMMKDQGYGSGYVYDHDTEEGVSGQNYFPDA
MGRQQYYTPKGAGRERPIADWLKEIAALRKSRLDE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=431, Percent_Identity=43.6194895591647, Blast_Score=332, Evalue=3e-91,
Organism=Homo sapiens, GI18426904, Length=431, Percent_Identity=39.2111368909513, Blast_Score=275, Evalue=6e-74,
Organism=Escherichia coli, GI1787119, Length=443, Percent_Identity=45.1467268623025, Blast_Score=368, Evalue=1e-103,
Organism=Saccharomyces cerevisiae, GI6324111, Length=419, Percent_Identity=40.8114558472554, Blast_Score=302, Evalue=5e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=214, Percent_Identity=26.1682242990654, Blast_Score=74, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47948; Mature: 47817

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFSAAGLEDDAPRPLADRLRPKKLSDVVGQGHLIGPDGPIGAMLRNGRLVSMILWGP
CCCHHHHCCCCCCCCCCHHHHCCHHHHHHHHCCCEEECCCCCHHHHHCCCCEEEEEEECC
PGVGKTTIARLLAQETDLEFEALSAIFSGVKDLRAAFEKAEARRRVGKGTLLFVDEIHRF
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
NRSQQDGFLPFVESGTVTLVGATTENPSFELNGALLSRCQVMVLRRLEDDDLRELMARAE
CCCCCCCCCCEECCCCEEEEEECCCCCCEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RAMGRRLPAMPDAREALIRMADGDGRYLLNLVEQAYAMRGEPGLLSLEEIATGLQKRAAA
HHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH
YDKDREEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPLFIARRLIRMASEDIGLAD
HCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
PTALMICGEAARSYERLGSPEGELMLAHAVIHLATAPKSNAAYVAYKAARRAASETGSLM
CHHHEEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
PPKHILNAPTSMMKDQGYGSGYVYDHDTEEGVSGQNYFPDAMGRQQYYTPKGAGRERPIA
CCHHHHCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHH
DWLKEIAALRKSRLDE
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SDLFSAAGLEDDAPRPLADRLRPKKLSDVVGQGHLIGPDGPIGAMLRNGRLVSMILWGP
CCHHHHCCCCCCCCCCHHHHCCHHHHHHHHCCCEEECCCCCHHHHHCCCCEEEEEEECC
PGVGKTTIARLLAQETDLEFEALSAIFSGVKDLRAAFEKAEARRRVGKGTLLFVDEIHRF
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
NRSQQDGFLPFVESGTVTLVGATTENPSFELNGALLSRCQVMVLRRLEDDDLRELMARAE
CCCCCCCCCCEECCCCEEEEEECCCCCCEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RAMGRRLPAMPDAREALIRMADGDGRYLLNLVEQAYAMRGEPGLLSLEEIATGLQKRAAA
HHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH
YDKDREEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPLFIARRLIRMASEDIGLAD
HCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
PTALMICGEAARSYERLGSPEGELMLAHAVIHLATAPKSNAAYVAYKAARRAASETGSLM
CHHHEEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
PPKHILNAPTSMMKDQGYGSGYVYDHDTEEGVSGQNYFPDAMGRQQYYTPKGAGRERPIA
CCHHHHCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHH
DWLKEIAALRKSRLDE
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]