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The map label for this gene is bepC [H]

Identifier: 114800241

GI number: 114800241

Start: 1723997

End: 1725277

Strand: Reverse

Name: bepC [H]

Synonym: HNE_1678

Alternate gene names: 114800241

Gene position: 1725277-1723997 (Counterclockwise)

Preceding gene: 114799434

Following gene: 114797380

Centisome position: 46.57

GC content: 65.81

Gene sequence:

>1281_bases
ATGCGCAAGCTTTCGCCCCGGCTGTTGCTCGGGACCAGCCTCCTCGCAATCTGCATCACATCTCCGGCGATGGCCGAAAC
GCTGCCCGAAGCGATTGAGTCAGCGTTTGCGACCAACCCGCAGCTCGAGATCGAGCGCTACAACACGGATATTGCGCGGC
AGAACCTCGAAGTGGCGCGCGGCGCCGGTCGCCCGACGGTGAATTTCTCGGCCACAGGCGGCTACGAATACATCGACACG
ACCAGCCCCTTTGCCTTCAGCGTGGGAGATCGCCCGATTGCCACGGCGCAGCTGCAGGCGATCCAGCCCATCTATACCGG
CGGCAAGATTTCGGCAGGCATCCGCCAGGCACAGGCAGGCATCAGCTCGGCCGATCTGGGATTCTCGGCGGCGCGCCAGG
ATCTGATCCTCCAGGTGGTGACCGCTTACATGGATGTGGTGCGCGACCGGGAAGCGGTGAACATCCGCCAGAACAATGTG
ACCGTGACCGGCGAACAGGTTCGCGCGGCAAGTGACCGTTTCGAAGTGGGCGTTGTAACGCGCACGGATGTTGCCCAGGC
ACAGGCGCGTCTGGAAGGCGCGCGTGCGGCGCTGGCGGGCGCAGAGGCGACCCTCCAGTCCAGTGAGGCCAACTATCAGT
TTCTCACCGGCCTTCAGGCGGGCGACCTTGCCCCGCCCCCGCCGGTTCCGCCCCTGCCCGCGACCCTTGAAGACGCGCTC
GCCGCGGCGACAATAAATAACCCATCCATTGCAGCTGCCCGCGAGGATTTGCGCGCGGCCGAAGCGGCTGTTGATTCGGC
CCGCGCCGATGGCCGGCCGCAGATCAGCCTTGTCGGCACGGCAAGCGCGCAGGAAACCTTCGGTGATGCCAACCAGCGGG
ACACCAGCGTTTCCGCACTTGCGCAGGCGCGCATTCCACTGCTTTCGGGCGGCGTCGTGAAGGCGCAGACTGAAAGCGCT
AAACTGCGCCGGGCACAGGCCCGCCGCTTCATCGACAATCTGGAAACGCAGGTACGCGCCCAGGTGACCCAGGCCTGGTA
CAGCTATGACGCCTCCCTGCGGTCGATTGAGGCCTCCCGCCGTCAGGTCGAGGCGTCCGAGATCGCCTATGAGGGCGCCA
TGGAGGAGCTGTCCGTCGGTGTCCGCTCGACGCTCGACACGCTCGATCAGGAACAGCAGCTGTTTGACGCGCGCCTGGCC
CTCGTGGCGGCAGAGCGCGACGCTTATGTGGCCGCCCACAACCTGCTGCGCGCGACCGGCGCTCTTGGCACGATTGGCTG
A

Upstream 100 bases:

>100_bases
TTCTGAAAATGCCTGCGTCTTTATTGTTTGGTGAACAGCGTTCACCTTATCCCAATAAAGGCATATATATCCTGCTGTAA
GGACCAACAGGGTATTCATC

Downstream 100 bases:

>100_bases
TACACCGGGGCCCTGAGCGTTAACGATGTCAAACGCTTGTTAACCCCACCACCCTATCGGTGGTATTCAGAGATTGTGAT
TCCACCAGCGAGGGGCTGAG

Product: TolC family type I secretion outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MRKLSPRLLLGTSLLAICITSPAMAETLPEAIESAFATNPQLEIERYNTDIARQNLEVARGAGRPTVNFSATGGYEYIDT
TSPFAFSVGDRPIATAQLQAIQPIYTGGKISAGIRQAQAGISSADLGFSAARQDLILQVVTAYMDVVRDREAVNIRQNNV
TVTGEQVRAASDRFEVGVVTRTDVAQAQARLEGARAALAGAEATLQSSEANYQFLTGLQAGDLAPPPPVPPLPATLEDAL
AAATINNPSIAAAREDLRAAEAAVDSARADGRPQISLVGTASAQETFGDANQRDTSVSALAQARIPLLSGGVVKAQTESA
KLRRAQARRFIDNLETQVRAQVTQAWYSYDASLRSIEASRRQVEASEIAYEGAMEELSVGVRSTLDTLDQEQQLFDARLA
LVAAERDAYVAAHNLLRATGALGTIG

Sequences:

>Translated_426_residues
MRKLSPRLLLGTSLLAICITSPAMAETLPEAIESAFATNPQLEIERYNTDIARQNLEVARGAGRPTVNFSATGGYEYIDT
TSPFAFSVGDRPIATAQLQAIQPIYTGGKISAGIRQAQAGISSADLGFSAARQDLILQVVTAYMDVVRDREAVNIRQNNV
TVTGEQVRAASDRFEVGVVTRTDVAQAQARLEGARAALAGAEATLQSSEANYQFLTGLQAGDLAPPPPVPPLPATLEDAL
AAATINNPSIAAAREDLRAAEAAVDSARADGRPQISLVGTASAQETFGDANQRDTSVSALAQARIPLLSGGVVKAQTESA
KLRRAQARRFIDNLETQVRAQVTQAWYSYDASLRSIEASRRQVEASEIAYEGAMEELSVGVRSTLDTLDQEQQLFDARLA
LVAAERDAYVAAHNLLRATGALGTIG
>Mature_426_residues
MRKLSPRLLLGTSLLAICITSPAMAETLPEAIESAFATNPQLEIERYNTDIARQNLEVARGAGRPTVNFSATGGYEYIDT
TSPFAFSVGDRPIATAQLQAIQPIYTGGKISAGIRQAQAGISSADLGFSAARQDLILQVVTAYMDVVRDREAVNIRQNNV
TVTGEQVRAASDRFEVGVVTRTDVAQAQARLEGARAALAGAEATLQSSEANYQFLTGLQAGDLAPPPPVPPLPATLEDAL
AAATINNPSIAAAREDLRAAEAAVDSARADGRPQISLVGTASAQETFGDANQRDTSVSALAQARIPLLSGGVVKAQTESA
KLRRAQARRFIDNLETQVRAQVTQAWYSYDASLRSIEASRRQVEASEIAYEGAMEELSVGVRSTLDTLDQEQQLFDARLA
LVAAERDAYVAAHNLLRATGALGTIG

Specific function: Involved in the efflux of toxic and relatively hydrophobic compounds. Influences survival inside the host [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=452, Percent_Identity=25.4424778761062, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 45197; Mature: 45197

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLSPRLLLGTSLLAICITSPAMAETLPEAIESAFATNPQLEIERYNTDIARQNLEVAR
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
GAGRPTVNFSATGGYEYIDTTSPFAFSVGDRPIATAQLQAIQPIYTGGKISAGIRQAQAG
CCCCCEEEEECCCCCEEECCCCCEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCC
ISSADLGFSAARQDLILQVVTAYMDVVRDREAVNIRQNNVTVTGEQVRAASDRFEVGVVT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEHHHHHHCCCCEEEEEEE
RTDVAQAQARLEGARAALAGAEATLQSSEANYQFLTGLQAGDLAPPPPVPPLPATLEDAL
CHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHH
AAATINNPSIAAAREDLRAAEAAVDSARADGRPQISLVGTASAQETFGDANQRDTSVSAL
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCCCCHHHHHHH
AQARIPLLSGGVVKAQTESAKLRRAQARRFIDNLETQVRAQVTQAWYSYDASLRSIEASR
HHHCCCEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQVEASEIAYEGAMEELSVGVRSTLDTLDQEQQLFDARLALVAAERDAYVAAHNLLRATG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
ALGTIG
CCCCCC
>Mature Secondary Structure
MRKLSPRLLLGTSLLAICITSPAMAETLPEAIESAFATNPQLEIERYNTDIARQNLEVAR
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
GAGRPTVNFSATGGYEYIDTTSPFAFSVGDRPIATAQLQAIQPIYTGGKISAGIRQAQAG
CCCCCEEEEECCCCCEEECCCCCEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCC
ISSADLGFSAARQDLILQVVTAYMDVVRDREAVNIRQNNVTVTGEQVRAASDRFEVGVVT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEHHHHHHCCCCEEEEEEE
RTDVAQAQARLEGARAALAGAEATLQSSEANYQFLTGLQAGDLAPPPPVPPLPATLEDAL
CHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHH
AAATINNPSIAAAREDLRAAEAAVDSARADGRPQISLVGTASAQETFGDANQRDTSVSAL
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCCCCHHHHHHH
AQARIPLLSGGVVKAQTESAKLRRAQARRFIDNLETQVRAQVTQAWYSYDASLRSIEASR
HHHCCCEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQVEASEIAYEGAMEELSVGVRSTLDTLDQEQQLFDARLALVAAERDAYVAAHNLLRATG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
ALGTIG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]