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The map label for this gene is chbR [C]

Identifier: 114800193

GI number: 114800193

Start: 404087

End: 405220

Strand: Reverse

Name: chbR [C]

Synonym: HNE_0405

Alternate gene names: 114800193

Gene position: 405220-404087 (Counterclockwise)

Preceding gene: 114797970

Following gene: 114799368

Centisome position: 10.94

GC content: 56.79

Gene sequence:

>1134_bases
ATGTCTACATTACAGGAATACATATCGGTTATCGGCTGTTTTCAGGGCTGCCTGCTCGCCGGACTTTTGATCGCCGATGG
GCGGATGAATACGGCCAGCCGAATTCTGGGCGTCATCTGTTTCCTGGTGGCGCTCGTTTTCCTGATGCCATTCCTGTTGA
CCCATGCCGGCAACGATGCCGTTGCCAGGACGCTCGGGCTTGTGTTCTTTTTCCCGGTGGCATTGGGGCCGCTTGGGTAT
CTTTACTGCCGGACCGCCATTCTCGAAACGCCGTTGGTTCGGCGTGACCTTCTCCATCTGATCCCGTGGTTGTTCTGTTA
CGTTCTGATCGCTGACGTTCTGCTGTCCGATCCACAGGAAATGGCGCATTGGATTGCCGGGGCTGAGCCAGGCAGTCTTC
GCCTGCAAATCACGGAATATGTGCCCGTTGCTCTGGCCTATGCCTATGCGGGCTGGACCGGCCTGATTATCTGGCGTTAC
CGGCGACAGGCGGGCGACAATCTGGCAAACTTCGACCCATCGGTCTTCAACTGGCTGCTTACATTACAGGCGCTGAGCCT
CATCGTCTGGTCTCTCAAGGCGCTGCCCGGACCTGCATCTGCGCCGAGAGTTTTCACCGATAGCGCGAACTTGTTTTTGA
TCGTGCTCGTCTACGCCATCGCGATCATGCAGTGGCGCAACCCCCAGTTCTTCTCAATCCCAAACCTCTCTGAAGAACGG
TCCAGGCCTGTCCCCGAAAACTCCGGCGAAGACATCTCCTCCCCGGAGGGTGAGCTCGATCCGGCCACTCGCGCGGCGCT
GTTCGAGACAGTCAAACGGCAAGTCGAGGGCGGCAGGCTTTACCTTGATAGCGGGCTGACATTGACCCGTCTTTCAGCCG
CAACCGGCTTGAGCAAGCATCATGTGTCAGAGGTTCTCAACCGGCATGCGGGCAAGAACTTCTACGAGTTCATTAACGGG
TATCGCGTCGAATTTGTGCGCGAACGCCTTGAGGAAAAAACGGAACAGACCGTTCTCGATATTGCTCTGGAGGCCGGGTT
TTCTTCCAAGAGCACCTTCAACGCGATTTTCAAACAGTTCACCGGCCAGACCCCGACCCAATACCGAAAGGCATTGGCGC
CGCAAAACCGCTGA

Upstream 100 bases:

>100_bases
CTTTCATACGTCCGGCAAACGGCGCGCAGAGCATATTTTGAAAGGATGTGTGGCGCGAAAAGCTTTCGCATTCAAAGAGT
TTGGGTAGAACATCGTCCCG

Downstream 100 bases:

>100_bases
AACCTCCTTCCAAACGTCCAATTCGATCAATCTGGACGCTGATCCTGATGAGACGCGCTTGAAAGGCGCATCAGAGCAAT
CAGACAGAGGGTGACCCCAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSTLQEYISVIGCFQGCLLAGLLIADGRMNTASRILGVICFLVALVFLMPFLLTHAGNDAVARTLGLVFFFPVALGPLGY
LYCRTAILETPLVRRDLLHLIPWLFCYVLIADVLLSDPQEMAHWIAGAEPGSLRLQITEYVPVALAYAYAGWTGLIIWRY
RRQAGDNLANFDPSVFNWLLTLQALSLIVWSLKALPGPASAPRVFTDSANLFLIVLVYAIAIMQWRNPQFFSIPNLSEER
SRPVPENSGEDISSPEGELDPATRAALFETVKRQVEGGRLYLDSGLTLTRLSAATGLSKHHVSEVLNRHAGKNFYEFING
YRVEFVRERLEEKTEQTVLDIALEAGFSSKSTFNAIFKQFTGQTPTQYRKALAPQNR

Sequences:

>Translated_377_residues
MSTLQEYISVIGCFQGCLLAGLLIADGRMNTASRILGVICFLVALVFLMPFLLTHAGNDAVARTLGLVFFFPVALGPLGY
LYCRTAILETPLVRRDLLHLIPWLFCYVLIADVLLSDPQEMAHWIAGAEPGSLRLQITEYVPVALAYAYAGWTGLIIWRY
RRQAGDNLANFDPSVFNWLLTLQALSLIVWSLKALPGPASAPRVFTDSANLFLIVLVYAIAIMQWRNPQFFSIPNLSEER
SRPVPENSGEDISSPEGELDPATRAALFETVKRQVEGGRLYLDSGLTLTRLSAATGLSKHHVSEVLNRHAGKNFYEFING
YRVEFVRERLEEKTEQTVLDIALEAGFSSKSTFNAIFKQFTGQTPTQYRKALAPQNR
>Mature_376_residues
STLQEYISVIGCFQGCLLAGLLIADGRMNTASRILGVICFLVALVFLMPFLLTHAGNDAVARTLGLVFFFPVALGPLGYL
YCRTAILETPLVRRDLLHLIPWLFCYVLIADVLLSDPQEMAHWIAGAEPGSLRLQITEYVPVALAYAYAGWTGLIIWRYR
RQAGDNLANFDPSVFNWLLTLQALSLIVWSLKALPGPASAPRVFTDSANLFLIVLVYAIAIMQWRNPQFFSIPNLSEERS
RPVPENSGEDISSPEGELDPATRAALFETVKRQVEGGRLYLDSGLTLTRLSAATGLSKHHVSEVLNRHAGKNFYEFINGY
RVEFVRERLEEKTEQTVLDIALEAGFSSKSTFNAIFKQFTGQTPTQYRKALAPQNR

Specific function: Repressor For The Chbbcarfg Operon (Probable). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 42023; Mature: 41892

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLQEYISVIGCFQGCLLAGLLIADGRMNTASRILGVICFLVALVFLMPFLLTHAGNDA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
VARTLGLVFFFPVALGPLGYLYCRTAILETPLVRRDLLHLIPWLFCYVLIADVLLSDPQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
MAHWIAGAEPGSLRLQITEYVPVALAYAYAGWTGLIIWRYRRQAGDNLANFDPSVFNWLL
HHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TLQALSLIVWSLKALPGPASAPRVFTDSANLFLIVLVYAIAIMQWRNPQFFSIPNLSEER
HHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEECCCCCHHH
SRPVPENSGEDISSPEGELDPATRAALFETVKRQVEGGRLYLDSGLTLTRLSAATGLSKH
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCHHHH
HVSEVLNRHAGKNFYEFINGYRVEFVRERLEEKTEQTVLDIALEAGFSSKSTFNAIFKQF
HHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TGQTPTQYRKALAPQNR
CCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
STLQEYISVIGCFQGCLLAGLLIADGRMNTASRILGVICFLVALVFLMPFLLTHAGNDA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
VARTLGLVFFFPVALGPLGYLYCRTAILETPLVRRDLLHLIPWLFCYVLIADVLLSDPQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
MAHWIAGAEPGSLRLQITEYVPVALAYAYAGWTGLIIWRYRRQAGDNLANFDPSVFNWLL
HHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TLQALSLIVWSLKALPGPASAPRVFTDSANLFLIVLVYAIAIMQWRNPQFFSIPNLSEER
HHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEECCCCCHHH
SRPVPENSGEDISSPEGELDPATRAALFETVKRQVEGGRLYLDSGLTLTRLSAATGLSKH
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCHHHH
HVSEVLNRHAGKNFYEFINGYRVEFVRERLEEKTEQTVLDIALEAGFSSKSTFNAIFKQF
HHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TGQTPTQYRKALAPQNR
CCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]