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The map label for this gene is ygiP [C]

Identifier: 114800121

GI number: 114800121

Start: 661751

End: 662671

Strand: Reverse

Name: ygiP [C]

Synonym: HNE_0660

Alternate gene names: 114800121

Gene position: 662671-661751 (Counterclockwise)

Preceding gene: 114800259

Following gene: 114797971

Centisome position: 17.89

GC content: 63.41

Gene sequence:

>921_bases
TTGGATAGAATTGAAGCCATGCAGTTGTTCGTGCGCGTCGCCGATGCGGGCAGCTTTTCGCGCGCTGCGGCCGATCTTGA
ACTTGGCCAACCCACCGTGTCGCGCCGGATACAGGATCTGGAAGCAAGCCTTGGCACAACCCTCTTCCAGCGGACGACCC
GCGCGCTGAGCCTGACCGAAGCGGGCGAGCGCTTCTATCGCCGCGCAGTCGACATTCTTACCGAGTTTGATGAAGCCGAA
GCCGAAGCGCGCGGCCTGGAACACTCCCCTGTCGGGCTGTTGCGGATTTCCTGCTCGCATTCCTTTGCCCGGCGCGTCGT
GGCACCGGCTGTACCTGGCTTTCTTGCCGCCTATTCCAGCATCCGGTTTGACCTGGTGTCCGACGATTCGCTTACGGACC
TTGTTTCGGAAGGCATTGATATTGCTTTCCGGCTCGGCGAACTGCGCGACTCTCGGCTCATGGCCAAGAAGCTCGGCGAA
GCACCTCAGGTGCTCTGGGCGTCCCCGGAATATATCGCGCGCCACGGCGCGCCGCAGACCGTCGAGGAGGTCGGCAACCA
CAATGCCGTGGTCTTCCGGCACAACCGCCAGACCGTCTGGGACCTCAGCCGCGGGAATGAACATTTCGAAGCGCGGGTTG
ATGGGCCGTTCCGCGCTTCATCAGGTGAAACGCTGCTCGAGGCAGCAGCTGGCGGGCTCGGCATCCTGCTGGCCCCGGCC
TGGCTGGCATCGGAATGCTTCGGCGATCAGCGCCTGGTCCGTGTGCTGCCCGAATGGCAAGGCCCTTCCCTGTCGATCCA
TGCGGTCTGGACCTCAGGCAAGCTGCGCGGCAAGGCACGGCTGTTTGTCGAACATATCGAGCCAGCCATTGCCCACGCCT
GTTCAATGGCCCGGCTGGAGGCCGCTACAGCCGCGCGTTGA

Upstream 100 bases:

>100_bases
AGGCTTACTGCCACCGCTTGGGTTTTGCCGGCAAAGCAAGTAGTCGTGAGCAACCTACACGCCCGCGTGATCGCGGCCCA
TCAGTTTCCGGAGGACGGGC

Downstream 100 bases:

>100_bases
TCGCTTTGGGAAAGACGCCAAGGATTTTCAGCGACTGCGAGAAGAAGCCCAACTCCTCAAGCGCAAGCTGGACCGGGCGC
TCATCAGGGTGGCCTTCGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MDRIEAMQLFVRVADAGSFSRAAADLELGQPTVSRRIQDLEASLGTTLFQRTTRALSLTEAGERFYRRAVDILTEFDEAE
AEARGLEHSPVGLLRISCSHSFARRVVAPAVPGFLAAYSSIRFDLVSDDSLTDLVSEGIDIAFRLGELRDSRLMAKKLGE
APQVLWASPEYIARHGAPQTVEEVGNHNAVVFRHNRQTVWDLSRGNEHFEARVDGPFRASSGETLLEAAAGGLGILLAPA
WLASECFGDQRLVRVLPEWQGPSLSIHAVWTSGKLRGKARLFVEHIEPAIAHACSMARLEAATAAR

Sequences:

>Translated_306_residues
MDRIEAMQLFVRVADAGSFSRAAADLELGQPTVSRRIQDLEASLGTTLFQRTTRALSLTEAGERFYRRAVDILTEFDEAE
AEARGLEHSPVGLLRISCSHSFARRVVAPAVPGFLAAYSSIRFDLVSDDSLTDLVSEGIDIAFRLGELRDSRLMAKKLGE
APQVLWASPEYIARHGAPQTVEEVGNHNAVVFRHNRQTVWDLSRGNEHFEARVDGPFRASSGETLLEAAAGGLGILLAPA
WLASECFGDQRLVRVLPEWQGPSLSIHAVWTSGKLRGKARLFVEHIEPAIAHACSMARLEAATAAR
>Mature_306_residues
MDRIEAMQLFVRVADAGSFSRAAADLELGQPTVSRRIQDLEASLGTTLFQRTTRALSLTEAGERFYRRAVDILTEFDEAE
AEARGLEHSPVGLLRISCSHSFARRVVAPAVPGFLAAYSSIRFDLVSDDSLTDLVSEGIDIAFRLGELRDSRLMAKKLGE
APQVLWASPEYIARHGAPQTVEEVGNHNAVVFRHNRQTVWDLSRGNEHFEARVDGPFRASSGETLLEAAAGGLGILLAPA
WLASECFGDQRLVRVLPEWQGPSLSIHAVWTSGKLRGKARLFVEHIEPAIAHACSMARLEAATAAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=283, Percent_Identity=33.5689045936396, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=32.8767123287671, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=35.0515463917526, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=33.7748344370861, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=28.2758620689655, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=29.8969072164948, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787128, Length=263, Percent_Identity=31.5589353612167, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI145693105, Length=165, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789173, Length=252, Percent_Identity=28.968253968254, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI157672245, Length=142, Percent_Identity=33.8028169014084, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788706, Length=209, Percent_Identity=28.2296650717703, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787601, Length=146, Percent_Identity=30.1369863013699, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787879, Length=102, Percent_Identity=41.1764705882353, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787806, Length=154, Percent_Identity=32.4675324675325, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33498; Mature: 33498

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIEAMQLFVRVADAGSFSRAAADLELGQPTVSRRIQDLEASLGTTLFQRTTRALSLTE
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGERFYRRAVDILTEFDEAEAEARGLEHSPVGLLRISCSHSFARRVVAPAVPGFLAAYSS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHH
IRFDLVSDDSLTDLVSEGIDIAFRLGELRDSRLMAKKLGEAPQVLWASPEYIARHGAPQT
HEEEEECCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHCCCCHH
VEEVGNHNAVVFRHNRQTVWDLSRGNEHFEARVDGPFRASSGETLLEAAAGGLGILLAPA
HHHHCCCCEEEEECCCCEEEECCCCCCEEEEEECCCEECCCCCHHHHHHCCCCEEEHHHH
WLASECFGDQRLVRVLPEWQGPSLSIHAVWTSGKLRGKARLFVEHIEPAIAHACSMARLE
HHHHHHCCCHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AATAAR
HHHCCC
>Mature Secondary Structure
MDRIEAMQLFVRVADAGSFSRAAADLELGQPTVSRRIQDLEASLGTTLFQRTTRALSLTE
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGERFYRRAVDILTEFDEAEAEARGLEHSPVGLLRISCSHSFARRVVAPAVPGFLAAYSS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHH
IRFDLVSDDSLTDLVSEGIDIAFRLGELRDSRLMAKKLGEAPQVLWASPEYIARHGAPQT
HEEEEECCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHCCCCHH
VEEVGNHNAVVFRHNRQTVWDLSRGNEHFEARVDGPFRASSGETLLEAAAGGLGILLAPA
HHHHCCCCEEEEECCCCEEEECCCCCCEEEEEECCCEECCCCCHHHHHHCCCCEEEHHHH
WLASECFGDQRLVRVLPEWQGPSLSIHAVWTSGKLRGKARLFVEHIEPAIAHACSMARLE
HHHHHHCCCHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AATAAR
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]