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The map label for this gene is cycM [H]

Identifier: 114797971

GI number: 114797971

Start: 659971

End: 660768

Strand: Reverse

Name: cycM [H]

Synonym: HNE_0658

Alternate gene names: 114797971

Gene position: 660768-659971 (Counterclockwise)

Preceding gene: 114800121

Following gene: 114797229

Centisome position: 17.83

GC content: 63.91

Gene sequence:

>798_bases
ATGGGAGAGCTCGGTCTCAACAAGATCATCGGAGCGGTGCTCGCAAGCGCGCTCGGCATCATGTTCCTCATGCAGCTTCC
GAACGTGGTGTTCGCCAGCGGCGCAGGCCATCACGGCGAGGAAGCCGAGGCCACAACGCTTTCGGAAAAGATGTGCCAGC
AGTTCCACTATTGCGTTGAAGTCGCTGAAGCGGCGGGCGCAGGCGCGGATGCAGCAGAAGAGGTGTTTGACCTTGGCGCT
GCCCTTGCCAGCGCGGACCTGACCCGCGGTGAACGCCTGTTCGCGAGCCAGTGCTCGACCTGCCACACCATCAATGCTGG
CGGCGCAAACGGCACCGGCCCGAACCTGCACAACACTGTGGGCGCCGACAAAGCCCATATCGCCGGATTTGCTTATTCCG
GCGCGCTTTCCAACGCAGAAGGCAGCTGGACCTACGAGAACCTGAATGAGTGGATCAACAATCCGAGCGCTTATGTTCGG
GGTACGTCGATGTCGTTTGCGGGTATTCGCCGCGATACGGACCGGGCGGCGGTGATCGCTTATCTGGCGGCCAATACCGA
GAACGCACCGGCATTCCCGGAGCCGCTGCCAGCTGCTGAAGAGGCCGGTGACGAGGCTGTTCCAGCTGAAGGTGAAGCGG
TTGAAGGCGAGGCGGCACCTGCTGACGGCGCTGCAGTTCCAGCCGAAGGCGAAGCGGCCCCGGCGGCGGCTGAAGAGGGC
GCTGCTCCGGCAGAGGAAGCCCCCGCCACCGAGGAGGCGCCTACCGAAGCGCCCGCTGAAGAAGCCCCTGCCGAGTAA

Upstream 100 bases:

>100_bases
GCGCCCTGGAGAGGCACCCTTTATATTGTGCGCACCCGGTTAGCGTGCCAAAAGGCGCCCGCCAAGACAGAATAACGCCA
TAGATTCGAAGGAATGCCCC

Downstream 100 bases:

>100_bases
GTCGGGGTTCAAAATTTCGATCAGAATTTAAACCCCGGCCCTGGCCGGGGTTTTTCTTTGGAAAAACAGGGTTCTGGAAT
TCAGGCGCTGAGCCAGTCCG

Product: cytochrome c family protein

Products: NA

Alternate protein names: Cytochrome c552 [H]

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MGELGLNKIIGAVLASALGIMFLMQLPNVVFASGAGHHGEEAEATTLSEKMCQQFHYCVEVAEAAGAGADAAEEVFDLGA
ALASADLTRGERLFASQCSTCHTINAGGANGTGPNLHNTVGADKAHIAGFAYSGALSNAEGSWTYENLNEWINNPSAYVR
GTSMSFAGIRRDTDRAAVIAYLAANTENAPAFPEPLPAAEEAGDEAVPAEGEAVEGEAAPADGAAVPAEGEAAPAAAEEG
AAPAEEAPATEEAPTEAPAEEAPAE

Sequences:

>Translated_265_residues
MGELGLNKIIGAVLASALGIMFLMQLPNVVFASGAGHHGEEAEATTLSEKMCQQFHYCVEVAEAAGAGADAAEEVFDLGA
ALASADLTRGERLFASQCSTCHTINAGGANGTGPNLHNTVGADKAHIAGFAYSGALSNAEGSWTYENLNEWINNPSAYVR
GTSMSFAGIRRDTDRAAVIAYLAANTENAPAFPEPLPAAEEAGDEAVPAEGEAVEGEAAPADGAAVPAEGEAAPAAAEEG
AAPAEEAPATEEAPTEAPAEEAPAE
>Mature_264_residues
GELGLNKIIGAVLASALGIMFLMQLPNVVFASGAGHHGEEAEATTLSEKMCQQFHYCVEVAEAAGAGADAAEEVFDLGAA
LASADLTRGERLFASQCSTCHTINAGGANGTGPNLHNTVGADKAHIAGFAYSGALSNAEGSWTYENLNEWINNPSAYVRG
TSMSFAGIRRDTDRAAVIAYLAANTENAPAFPEPLPAAEEAGDEAVPAEGEAVEGEAAPADGAAVPAEGEAAPAAAEEGA
APAEEAPATEEAPTEAPAEEAPAE

Specific function: Mediates the electron transport between the cytochrome bc1 complex and cytochrome-c oxidase [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI11128019, Length=101, Percent_Identity=39.6039603960396, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17539604, Length=97, Percent_Identity=37.1134020618557, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17566554, Length=113, Percent_Identity=30.9734513274336, Blast_Score=83, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6320796, Length=96, Percent_Identity=37.5, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322508, Length=99, Percent_Identity=35.3535353535354, Blast_Score=86, Evalue=8e-18,
Organism=Drosophila melanogaster, GI17137228, Length=103, Percent_Identity=41.747572815534, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI17137204, Length=104, Percent_Identity=37.5, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 26740; Mature: 26609

Theoretical pI: Translated: 3.82; Mature: 3.82

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGELGLNKIIGAVLASALGIMFLMQLPNVVFASGAGHHGEEAEATTLSEKMCQQFHYCVE
CCCCHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
VAEAAGAGADAAEEVFDLGAALASADLTRGERLFASQCSTCHTINAGGANGTGPNLHNTV
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHC
GADKAHIAGFAYSGALSNAEGSWTYENLNEWINNPSAYVRGTSMSFAGIRRDTDRAAVIA
CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCHHHCCCCCCHHHHHH
YLAANTENAPAFPEPLPAAEEAGDEAVPAEGEAVEGEAAPADGAAVPAEGEAAPAAAEEG
HHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
AAPAEEAPATEEAPTEAPAEEAPAE
CCCCHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GELGLNKIIGAVLASALGIMFLMQLPNVVFASGAGHHGEEAEATTLSEKMCQQFHYCVE
CCCHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
VAEAAGAGADAAEEVFDLGAALASADLTRGERLFASQCSTCHTINAGGANGTGPNLHNTV
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHC
GADKAHIAGFAYSGALSNAEGSWTYENLNEWINNPSAYVRGTSMSFAGIRRDTDRAAVIA
CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCHHHCCCCCCHHHHHH
YLAANTENAPAFPEPLPAAEEAGDEAVPAEGEAVEGEAAPADGAAVPAEGEAAPAAAEEG
HHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
AAPAEEAPATEEAPTEAPAEEAPAE
CCCCHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7628479 [H]