| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is aceE [H]
Identifier: 114799863
GI number: 114799863
Start: 3154082
End: 3156466
Strand: Direct
Name: aceE [H]
Synonym: HNE_2995
Alternate gene names: 114799863
Gene position: 3154082-3156466 (Clockwise)
Preceding gene: 114798774
Following gene: 114797530
Centisome position: 85.13
GC content: 63.14
Gene sequence:
>2385_bases ATGCCTCTTTCTTTCAAACAGCTGAAAACCATTGAGCAGCGCCTCCTCTGGCTGGCCGCCTGGACGGTTCACAATGCCAA CCATCTTCGCGAGAAGGCGGACGATGATGTGAAGGTGGGCGGGCATCAGGCGAGCTGCGCATCGATTGTGTCGATCATGA CGGCGCTCTATTTCCATGTGCTGCGGCCCGAAGACCGGGTGGCGGTTAAGCCCCATGCCGCGCCGGTGTTCCATGCGATG CATTACCTGATGGGCAGCCAGACGCGCGAGAAGCTGGAAAATTTCCGGGGCTATGGCGGGGCGCAGTCCTATCCCTCGCG CACCAAGGATATTGATGACGTGGATTTCTCCACCGGATCGGTTGGCCTGGGTGTAGCGGAGACAGCTTTTGCCTCGATCA TTCAGGACTACCTGATTGCCCGTCCGTGGACGGATTTTGGCTCGGGCAAACGCCCCGCCGGCCGGATGGTGGCGCTGGTG GGTGACGCTGAGCTGGACGAGGGCAATGTGTATGAATGCCTTCAGGAAGGCTGGAAGCATGGCCTGCGCAATACCTGGTG GATCATCGACTATAACCGGCAGAGCCTCGACGGCGTGGTACATGAAGGGCTCTGGACGAAGATCGAGGCGATCTTCAAGG CGTTTGGCTGGCGCGTAGAGGTGTTGCGCTTTGGCGCGTTGCAGCGGGCCGCCTTTGCAGAACCGGGCGGCGAGCGCCTG AAACAGTGGATCGAGGACTGCCCCAATCCGCTCTATTCGGCCCTCACCTATATGGGCGGCGCGGCATGGCGCAAGCGTCT GCTGGACGACATTGGCGATCAGGGCGACGTGGCCGCCTTGCTCGAGAAGCGCTCGGATACGCAGCTCAGTGAACTGATGA ACAATCTGGGCGGGCAATGCCTGGAGACGTTGCTGGAGGCCTTCTCCCGCGCCGATGACGAGCGGCCAACGGTGTTCCTC GCCTATACGATCAAGGGATGGAGCACGCCGCTTGCGGGGCATAAGGACAACCATGCCGGCCTGATGACCAAGGCACAGAT GGCCGATTTCCAGAAGGTGATGGGCGTCGCCGAGGGAGAGGAATGGGAGCCGTTTGCGACGGTGAAACAGCCCGGCGATC TGCAAGCGGCGCTGGAGGATGTTGCGTTCTTCGCCAAGGGTGCCCGCCGTTACAGTGCGCCGCGGGTGCCCTCCCCCGGA CCGGTGTTTCTGGAAGACGAGACGCTTTCCACGCAGGCCGGGCTTGGCAAGATCCTCGACAGCCTGGCGCGCGGCGATAC GGAGCTGGCGCAGCGTATACTGACGACATCGCCGGATGTGACGGTGTCGACCAATCTGGGCGGCTGGGTGAACCGGCGCG GCCTGTTTGCGCGGGAGGCTGTGGCCGACACGTTCCGGGACCAGAAAATCCCCTCGGCGCAAAAATGGGCATTCTCTCCT GAGGGGCAGCATATCGAGCTGGGCATTGCGGAGATGAACCTGTTCCTGCTGCTGGGCGCAGCGGGGCTTTCCCATTCTCT CTTTGGCGAGCGGCTGATCCCGGTCGGGACGGTGTATGATCCGTTTGTGGCGCGGGGCCTCGATGCGCTGAATTATGCCT GTTATCAGGATGCGCGCTTCATTATTGCGGGCACGCCTTCGGGCGTGACGCTGGCCCCGGAGGGCGGCGCACACCAGTCC ATCGGCGCGCAGCTGATCGGGATGAGCCAGGACGGCATCGTTTCCTTCGAACCGGCATTTCTGGACGAGCTGTCGATCAT CATGGACTGGTCGTTCGACTATCTGCAGCGCGACGGCGAGGGCGACCCGGACGAGCGCACCTGGCTGCGTGACGAGACGG GTGGATCGGTTTACCTGCGGCTTTCAACCCGGCCTGTTGAGCAGGTGCGCGCCTGGTCACGCGAAGACGCTGCGTTCCGG CAGGGCGTGATTGATGGCGGCTACTGGCTACGCAAGCCGGGCCCGAACGCCGAAGTCATCATTGCCTATCAGGGCGTGAT AGCGCCCGAAGCGATCAAGGCAGCCGCGCGGATCGGCGAAGGGCGGCGCGACATTGGCGTTCTGGCGGTCACATCAGCCG ACCGGTTGAATTCCGGCTGGACGGCGGCGCGCCGAGCACGGGCGCGCGGGCAGAAGACCGCCATCAGCCAGATTGAGCGG TTGATGGACGGTGTGCCCCGGCACGCGCAGCTGATCACGGTGACGGATGGGCATCCGGCAACACTCGCCTGGATCGGCGG CGTAAAGGGCCATCCGGTGACCCCGCTGGGCGTCGAGCATTTTGGACAGACCGGCACGATCCGGGACCTCTACCGGCACT TCATGATTGACGCTGATGCTATCGTCTCCGCGGCCAGCCACCTGTCTCCGGGTAAAAGCCTCTAG
Upstream 100 bases:
>100_bases TCCAAGGGGCTGGTTTTGTTGCCGGGTTGGCCATGGACTTGCCCGAGCGTCTGATCTAGGCGGTAGGAATTGCCCTTCCC TAGCGATATGGCCGAATTCC
Downstream 100 bases:
>100_bases CCCGGGCCGTTTGCCGGATCTGTAGTAGGTGGTGCAGCTGCGCTGAGTATAAGTGCCGATAAGGCGGAGAATTCCCGCAT TAAAACAACGTGATCTTTAC
Product: pyruvate dehydrogenase E1 component-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 794; Mature: 793
Protein sequence:
>794_residues MPLSFKQLKTIEQRLLWLAAWTVHNANHLREKADDDVKVGGHQASCASIVSIMTALYFHVLRPEDRVAVKPHAAPVFHAM HYLMGSQTREKLENFRGYGGAQSYPSRTKDIDDVDFSTGSVGLGVAETAFASIIQDYLIARPWTDFGSGKRPAGRMVALV GDAELDEGNVYECLQEGWKHGLRNTWWIIDYNRQSLDGVVHEGLWTKIEAIFKAFGWRVEVLRFGALQRAAFAEPGGERL KQWIEDCPNPLYSALTYMGGAAWRKRLLDDIGDQGDVAALLEKRSDTQLSELMNNLGGQCLETLLEAFSRADDERPTVFL AYTIKGWSTPLAGHKDNHAGLMTKAQMADFQKVMGVAEGEEWEPFATVKQPGDLQAALEDVAFFAKGARRYSAPRVPSPG PVFLEDETLSTQAGLGKILDSLARGDTELAQRILTTSPDVTVSTNLGGWVNRRGLFAREAVADTFRDQKIPSAQKWAFSP EGQHIELGIAEMNLFLLLGAAGLSHSLFGERLIPVGTVYDPFVARGLDALNYACYQDARFIIAGTPSGVTLAPEGGAHQS IGAQLIGMSQDGIVSFEPAFLDELSIIMDWSFDYLQRDGEGDPDERTWLRDETGGSVYLRLSTRPVEQVRAWSREDAAFR QGVIDGGYWLRKPGPNAEVIIAYQGVIAPEAIKAAARIGEGRRDIGVLAVTSADRLNSGWTAARRARARGQKTAISQIER LMDGVPRHAQLITVTDGHPATLAWIGGVKGHPVTPLGVEHFGQTGTIRDLYRHFMIDADAIVSAASHLSPGKSL
Sequences:
>Translated_794_residues MPLSFKQLKTIEQRLLWLAAWTVHNANHLREKADDDVKVGGHQASCASIVSIMTALYFHVLRPEDRVAVKPHAAPVFHAM HYLMGSQTREKLENFRGYGGAQSYPSRTKDIDDVDFSTGSVGLGVAETAFASIIQDYLIARPWTDFGSGKRPAGRMVALV GDAELDEGNVYECLQEGWKHGLRNTWWIIDYNRQSLDGVVHEGLWTKIEAIFKAFGWRVEVLRFGALQRAAFAEPGGERL KQWIEDCPNPLYSALTYMGGAAWRKRLLDDIGDQGDVAALLEKRSDTQLSELMNNLGGQCLETLLEAFSRADDERPTVFL AYTIKGWSTPLAGHKDNHAGLMTKAQMADFQKVMGVAEGEEWEPFATVKQPGDLQAALEDVAFFAKGARRYSAPRVPSPG PVFLEDETLSTQAGLGKILDSLARGDTELAQRILTTSPDVTVSTNLGGWVNRRGLFAREAVADTFRDQKIPSAQKWAFSP EGQHIELGIAEMNLFLLLGAAGLSHSLFGERLIPVGTVYDPFVARGLDALNYACYQDARFIIAGTPSGVTLAPEGGAHQS IGAQLIGMSQDGIVSFEPAFLDELSIIMDWSFDYLQRDGEGDPDERTWLRDETGGSVYLRLSTRPVEQVRAWSREDAAFR QGVIDGGYWLRKPGPNAEVIIAYQGVIAPEAIKAAARIGEGRRDIGVLAVTSADRLNSGWTAARRARARGQKTAISQIER LMDGVPRHAQLITVTDGHPATLAWIGGVKGHPVTPLGVEHFGQTGTIRDLYRHFMIDADAIVSAASHLSPGKSL >Mature_793_residues PLSFKQLKTIEQRLLWLAAWTVHNANHLREKADDDVKVGGHQASCASIVSIMTALYFHVLRPEDRVAVKPHAAPVFHAMH YLMGSQTREKLENFRGYGGAQSYPSRTKDIDDVDFSTGSVGLGVAETAFASIIQDYLIARPWTDFGSGKRPAGRMVALVG DAELDEGNVYECLQEGWKHGLRNTWWIIDYNRQSLDGVVHEGLWTKIEAIFKAFGWRVEVLRFGALQRAAFAEPGGERLK QWIEDCPNPLYSALTYMGGAAWRKRLLDDIGDQGDVAALLEKRSDTQLSELMNNLGGQCLETLLEAFSRADDERPTVFLA YTIKGWSTPLAGHKDNHAGLMTKAQMADFQKVMGVAEGEEWEPFATVKQPGDLQAALEDVAFFAKGARRYSAPRVPSPGP VFLEDETLSTQAGLGKILDSLARGDTELAQRILTTSPDVTVSTNLGGWVNRRGLFAREAVADTFRDQKIPSAQKWAFSPE GQHIELGIAEMNLFLLLGAAGLSHSLFGERLIPVGTVYDPFVARGLDALNYACYQDARFIIAGTPSGVTLAPEGGAHQSI GAQLIGMSQDGIVSFEPAFLDELSIIMDWSFDYLQRDGEGDPDERTWLRDETGGSVYLRLSTRPVEQVRAWSREDAAFRQ GVIDGGYWLRKPGPNAEVIIAYQGVIAPEAIKAAARIGEGRRDIGVLAVTSADRLNSGWTAARRARARGQKTAISQIERL MDGVPRHAQLITVTDGHPATLAWIGGVKGHPVTPLGVEHFGQTGTIRDLYRHFMIDADAIVSAASHLSPGKSL
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=829, Percent_Identity=23.8841978287093, Blast_Score=129, Evalue=5e-31,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 87093; Mature: 86962
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: PS00422 GRANINS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLSFKQLKTIEQRLLWLAAWTVHNANHLREKADDDVKVGGHQASCASIVSIMTALYFHV CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHH LRPEDRVAVKPHAAPVFHAMHYLMGSQTREKLENFRGYGGAQSYPSRTKDIDDVDFSTGS CCCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC VGLGVAETAFASIIQDYLIARPWTDFGSGKRPAGRMVALVGDAELDEGNVYECLQEGWKH CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH GLRNTWWIIDYNRQSLDGVVHEGLWTKIEAIFKAFGWRVEVLRFGALQRAAFAEPGGERL CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH KQWIEDCPNPLYSALTYMGGAAWRKRLLDDIGDQGDVAALLEKRSDTQLSELMNNLGGQC HHHHHHCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHCHHH LETLLEAFSRADDERPTVFLAYTIKGWSTPLAGHKDNHAGLMTKAQMADFQKVMGVAEGE HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC EWEPFATVKQPGDLQAALEDVAFFAKGARRYSAPRVPSPGPVFLEDETLSTQAGLGKILD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHH SLARGDTELAQRILTTSPDVTVSTNLGGWVNRRGLFAREAVADTFRDQKIPSAQKWAFSP HHHCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC EGQHIELGIAEMNLFLLLGAAGLSHSLFGERLIPVGTVYDPFVARGLDALNYACYQDARF CCCEEEEEHHHHEEEHHEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEE IIAGTPSGVTLAPEGGAHQSIGAQLIGMSQDGIVSFEPAFLDELSIIMDWSFDYLQRDGE EEEECCCCCEECCCCCCCCCCCCEEECCCCCCCEEECHHHHHHHHHHHCCCHHHHHCCCC GDPDERTWLRDETGGSVYLRLSTRPVEQVRAWSREDAAFRQGVIDGGYWLRKPGPNAEVI CCCCHHCEEECCCCCEEEEEECCCCHHHHHHCCHHHHHHHHCCCCCCEEECCCCCCCEEE IAYQGVIAPEAIKAAARIGEGRRDIGVLAVTSADRLNSGWTAARRARARGQKTAISQIER EEECCCCCHHHHHHHHHHCCCCCCEEEEEEECHHHCCCCHHHHHHHHHCCHHHHHHHHHH LMDGVPRHAQLITVTDGHPATLAWIGGVKGHPVTPLGVEHFGQTGTIRDLYRHFMIDADA HHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCHHH IVSAASHLSPGKSL HHHHHHHCCCCCCC >Mature Secondary Structure PLSFKQLKTIEQRLLWLAAWTVHNANHLREKADDDVKVGGHQASCASIVSIMTALYFHV CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHH LRPEDRVAVKPHAAPVFHAMHYLMGSQTREKLENFRGYGGAQSYPSRTKDIDDVDFSTGS CCCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC VGLGVAETAFASIIQDYLIARPWTDFGSGKRPAGRMVALVGDAELDEGNVYECLQEGWKH CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH GLRNTWWIIDYNRQSLDGVVHEGLWTKIEAIFKAFGWRVEVLRFGALQRAAFAEPGGERL CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH KQWIEDCPNPLYSALTYMGGAAWRKRLLDDIGDQGDVAALLEKRSDTQLSELMNNLGGQC HHHHHHCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHCHHH LETLLEAFSRADDERPTVFLAYTIKGWSTPLAGHKDNHAGLMTKAQMADFQKVMGVAEGE HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC EWEPFATVKQPGDLQAALEDVAFFAKGARRYSAPRVPSPGPVFLEDETLSTQAGLGKILD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHH SLARGDTELAQRILTTSPDVTVSTNLGGWVNRRGLFAREAVADTFRDQKIPSAQKWAFSP HHHCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC EGQHIELGIAEMNLFLLLGAAGLSHSLFGERLIPVGTVYDPFVARGLDALNYACYQDARF CCCEEEEEHHHHEEEHHEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEE IIAGTPSGVTLAPEGGAHQSIGAQLIGMSQDGIVSFEPAFLDELSIIMDWSFDYLQRDGE EEEECCCCCEECCCCCCCCCCCCEEECCCCCCCEEECHHHHHHHHHHHCCCHHHHHCCCC GDPDERTWLRDETGGSVYLRLSTRPVEQVRAWSREDAAFRQGVIDGGYWLRKPGPNAEVI CCCCHHCEEECCCCCEEEEEECCCCHHHHHHCCHHHHHHHHCCCCCCEEECCCCCCCEEE IAYQGVIAPEAIKAAARIGEGRRDIGVLAVTSADRLNSGWTAARRARARGQKTAISQIER EEECCCCCHHHHHHHHHHCCCCCCEEEEEEECHHHCCCCHHHHHHHHHCCHHHHHHHHHH LMDGVPRHAQLITVTDGHPATLAWIGGVKGHPVTPLGVEHFGQTGTIRDLYRHFMIDADA HHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCHHH IVSAASHLSPGKSL HHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9171401; 10984043 [H]