Click here to switch to the map view.

The map label for this gene is oprF [H]

Identifier: 114799688

GI number: 114799688

Start: 1878223

End: 1879359

Strand: Direct

Name: oprF [H]

Synonym: HNE_1821

Alternate gene names: 114799688

Gene position: 1878223-1879359 (Clockwise)

Preceding gene: 114799051

Following gene: 114797145

Centisome position: 50.69

GC content: 63.32

Gene sequence:

>1137_bases
ATGGTGTCGGTACGGCGTTTTCGCCGCGCCGATGGCGCGGTCATGCCCTTCCTGCCCTACGGCCTCATCCCGGTTGCCGG
CCTGGCCGCCCTGCTTCTGTTTGGCTGGTTTGTGCTCGCGTTCACCACCATTCAGGGCTCCGCCCGCGCCGCGTCCGAGC
GTGCCTTGGCTGAAGCCGGTGAAAGCTGGGCCAGGGTCCGCGCGTCCGGCCAGTGGATCACGATTGAGGGCACGCCGCCC
ACACCAGAGGCAGGAGAACGCGCCCTCGCCGTTGTAAAGACGGCCGCAACGTCCACCTGGCTCGGCAAGGCCAGGCCTGT
CACGCGCGTCAGGGCCGGTTTCGCCACAACAGCACCCGCGCAGGCCAACTCCATCAAGGCCAGCACCACCTCGCCCCCCG
ATCCGGAATTCCTGTTCCGTCTGACGGCTGGAACCCTGTCGCTCAATGGCAATATCCCCACACAATCCCTGAAAACAGAT
CTCGAGGATCTGGCCGAAAGCCGGAAATCTCCTGACCACCTGATTGATGTGATCAACGCACTCAACGTTACGGGCGGCGC
ATTGCCCAACGGGTTCGAAGCTGTCGCTCAGCGCGGCATAGACACGCTGTCAGAGTGCGTATCTGGCACTGCCAGCTTCA
GCGATCTTACCTTCAATCTGCGCTGCCAGGCAGATGATACAAAGGTTGAAAGCATTCGCGCTTCCGCCAATGCAGGGTTG
CCGCTCGGCGTGTTCGGCACCATAGAAATCCTGCCGATTCAAGCGGTAGCGAGTTGTGAAGAAGAACTCTCGCGCCTGCT
CGAGGCGGCACGCATCGAATTCGCGCCCGGCAGCGTCATCCTCAACGTCGCCAGCGGCCCGGTCCTCGATCTCGCCGCGC
GGGCCGCAAGTGATTGCCCCGGAACCCTTCGTGTTGAGGGGCACACGGACGACACCGGAAACCCCGGCTACAACGACCAG
CTTAGCCTGCGCCGGGCCGAAGCCGTCCGCGCCGCGATGATTGAGCGCGGCGTTCCGCCCGACCGTCTCGTCGCTGCCGG
ATATGGCCAGAACAATCCGGTTAGCAGCAATGAAACCGAAGACGGGCGTGCCCGAAACCGCCGGATCGAAATCCGAATTA
TCAGGCCAGGCGAATGA

Upstream 100 bases:

>100_bases
GTAGTGTCAGGGCGGGGTGAGGTGTCTTCCCCTCGCCCCGATCAGGGCCACCAGAGGCGGAAGCATGTCGCTCGACTCCA
GTCAGTCGGATCAACAAAAA

Downstream 100 bases:

>100_bases
GCCCCCTGATCACCCCTAGCGCGCCTGCCGGCGGAGATTGACCATGTGGTTCCTGCTTATTCAGATATTCTTCTTCATGT
GCGTCTCTGCGGCGCTCGGC

Product: OmpA family protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MVSVRRFRRADGAVMPFLPYGLIPVAGLAALLLFGWFVLAFTTIQGSARAASERALAEAGESWARVRASGQWITIEGTPP
TPEAGERALAVVKTAATSTWLGKARPVTRVRAGFATTAPAQANSIKASTTSPPDPEFLFRLTAGTLSLNGNIPTQSLKTD
LEDLAESRKSPDHLIDVINALNVTGGALPNGFEAVAQRGIDTLSECVSGTASFSDLTFNLRCQADDTKVESIRASANAGL
PLGVFGTIEILPIQAVASCEEELSRLLEAARIEFAPGSVILNVASGPVLDLAARAASDCPGTLRVEGHTDDTGNPGYNDQ
LSLRRAEAVRAAMIERGVPPDRLVAAGYGQNNPVSSNETEDGRARNRRIEIRIIRPGE

Sequences:

>Translated_378_residues
MVSVRRFRRADGAVMPFLPYGLIPVAGLAALLLFGWFVLAFTTIQGSARAASERALAEAGESWARVRASGQWITIEGTPP
TPEAGERALAVVKTAATSTWLGKARPVTRVRAGFATTAPAQANSIKASTTSPPDPEFLFRLTAGTLSLNGNIPTQSLKTD
LEDLAESRKSPDHLIDVINALNVTGGALPNGFEAVAQRGIDTLSECVSGTASFSDLTFNLRCQADDTKVESIRASANAGL
PLGVFGTIEILPIQAVASCEEELSRLLEAARIEFAPGSVILNVASGPVLDLAARAASDCPGTLRVEGHTDDTGNPGYNDQ
LSLRRAEAVRAAMIERGVPPDRLVAAGYGQNNPVSSNETEDGRARNRRIEIRIIRPGE
>Mature_378_residues
MVSVRRFRRADGAVMPFLPYGLIPVAGLAALLLFGWFVLAFTTIQGSARAASERALAEAGESWARVRASGQWITIEGTPP
TPEAGERALAVVKTAATSTWLGKARPVTRVRAGFATTAPAQANSIKASTTSPPDPEFLFRLTAGTLSLNGNIPTQSLKTD
LEDLAESRKSPDHLIDVINALNVTGGALPNGFEAVAQRGIDTLSECVSGTASFSDLTFNLRCQADDTKVESIRASANAGL
PLGVFGTIEILPIQAVASCEEELSRLLEAARIEFAPGSVILNVASGPVLDLAARAASDCPGTLRVEGHTDDTGNPGYNDQ
LSLRRAEAVRAAMIERGVPPDRLVAAGYGQNNPVSSNETEDGRARNRRIEIRIIRPGE

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=87, Percent_Identity=41.3793103448276, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI48994946, Length=103, Percent_Identity=37.8640776699029, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 39954; Mature: 39954

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSVRRFRRADGAVMPFLPYGLIPVAGLAALLLFGWFVLAFTTIQGSARAASERALAEAG
CCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
ESWARVRASGQWITIEGTPPTPEAGERALAVVKTAATSTWLGKARPVTRVRAGFATTAPA
HHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCC
QANSIKASTTSPPDPEFLFRLTAGTLSLNGNIPTQSLKTDLEDLAESRKSPDHLIDVINA
CCCCEECCCCCCCCHHHEEEEEECEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
LNVTGGALPNGFEAVAQRGIDTLSECVSGTASFSDLTFNLRCQADDTKVESIRASANAGL
HCCCCCCCCCHHHHHHHHCHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCC
PLGVFGTIEILPIQAVASCEEELSRLLEAARIEFAPGSVILNVASGPVLDLAARAASDCP
CEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCHHHHHHHHHCCCC
GTLRVEGHTDDTGNPGYNDQLSLRRAEAVRAAMIERGVPPDRLVAAGYGQNNPVSSNETE
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCC
DGRARNRRIEIRIIRPGE
CCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MVSVRRFRRADGAVMPFLPYGLIPVAGLAALLLFGWFVLAFTTIQGSARAASERALAEAG
CCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
ESWARVRASGQWITIEGTPPTPEAGERALAVVKTAATSTWLGKARPVTRVRAGFATTAPA
HHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCC
QANSIKASTTSPPDPEFLFRLTAGTLSLNGNIPTQSLKTDLEDLAESRKSPDHLIDVINA
CCCCEECCCCCCCCHHHEEEEEECEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
LNVTGGALPNGFEAVAQRGIDTLSECVSGTASFSDLTFNLRCQADDTKVESIRASANAGL
HCCCCCCCCCHHHHHHHHCHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCC
PLGVFGTIEILPIQAVASCEEELSRLLEAARIEFAPGSVILNVASGPVLDLAARAASDCP
CEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCHHHHHHHHHCCCC
GTLRVEGHTDDTGNPGYNDQLSLRRAEAVRAAMIERGVPPDRLVAAGYGQNNPVSSNETE
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCC
DGRARNRRIEIRIIRPGE
CCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]