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The map label for this gene is rplU [H]

Identifier: 114797145

GI number: 114797145

Start: 1879403

End: 1881148

Strand: Direct

Name: rplU [H]

Synonym: HNE_1822

Alternate gene names: 114797145

Gene position: 1879403-1881148 (Clockwise)

Preceding gene: 114799688

Following gene: 114798240

Centisome position: 50.73

GC content: 62.26

Gene sequence:

>1746_bases
ATGTGGTTCCTGCTTATTCAGATATTCTTCTTCATGTGCGTCTCTGCGGCGCTCGGCGCAGCGCTCGCCTGGTGGTGGCT
GCGCCGCCGCTTCATCGATGTAACGGAAACGCATGCCGACCTTACGCGCCAGGTCGAAACCGCAATCGCCGATGGCCGCG
CCCTCAAGAAGGAAGATATTGATGCCAGCCTGACAACGGCGTTCGCCGCCTATCAGCCTCCCCAGCCGGATTTCCTGCCC
TTGCTGGAGCGCCTGGAGCTGCTTGAAAAACAACTTGCAATGCCTGATCCGGATATGGGCTCTTTGAAGGATCGCATTGG
CGCAATCGAGCAGGCCGTCTCGACAACGTCTGCATCCATCGCCTCCCTGCGCAGCATCCACCTGGCCGCCATTTCAAGTA
ATATCAAAGACGTAGCCGACCGTGTGGACGGCATCAAAATGCCCGACGTGGAGAGCATCCATCAACGCGTCGCGTCGCTC
GCAGACACCGTCGCGTCCAACCGGCCAGACCTGACGCCGCTGCAAGACAGGCTCGCCGCGCTGGAAACCCAAATCTCCAA
CTTCAAAATTCCCGAAGTCGATCTCGGCCCGGTTCACAGCGGCCTCGCCCGGCTGGACCTCAGCCTCTCAGAGCTGCAAC
CCCCTGAAATCGACCTCCGCCCGATCGAAACCCGCCTTTCCAAACTCGAGGAGCTTCTCGACGCTCTGGATCACAAGGAC
TCCTTCGCTCTGCTGGCAGGAGACGTTGCCACAGTCTCGGCAGAACTCGCCGCGATTTCTGGCGAAGTGGCCAACGTCTC
CACCGGTCTCACCACCGTATCTACGGGCCTCACGCGAGTGTCCGAGGAAGTAGGCTCGGTCGGTGAAGCGGTCTCCCGCA
TAGAAATTCCGGAAAGCGCTGATCTGGACCCGATCCACAACCGGCTTGCCGAAATCGACGCCTCCCTGATGGACCGCTTT
GCCCTGGTCCAGGAGCGCATTTCCGCGACTACGCCGCTGAACGATGCCCTCATCGCTACCTTGGCAGCCGTGGAAGCAGA
TCTCGATGTCGTTGCCTCGCGGCGCGGCCCTGATCTGGAACCCCTGTTCGCACAGCTGGCATCGCTGGACTCCTCCGTCG
GAACCATCCGGAATGAGCTGCGCAGCCAGACCCGGCTCGAAACCATCGAACGCCGCCTGCTCACCATCCAGGAAGCGGTC
AACAACCCGCCCTCCAACGAAGTCTCCCGCGAAGACCTGAGCGCGCTGGAAGACCGCCTGACATCCATCGAGTACGGCGT
CACCGCTCTGCATCACATGCTCCGCGGCCGCGGCGACAACGGCCGCGCAGAGAGCGAAGCCCCACGCCCGCGCGCCGAAG
CTGCCGGATATGAAGCCCGGACAAGCACCCGCACCACGCGCTCGCTCCCCACCGCCGAAATGCAGGCCGTCGCGAGCCGC
CGCGCAGAAGCCATCGCCGAAGCCCGCAAGCCGGATGATGAGGCTAACCTGCTGACACACGCCGCATTCGGCGAAGGGGA
TGACCTCGCCCAGATTGTCGGTGTCGGGCCGATCCTGACAGAGCTGCTGCACGATGTCGGCGTGTTCTACTTCTGGCAAA
TCGCCGAATGGAGCGATGAAGACGTTGCCTATGTCGACGAAAAACTGCTGCATTTCAAAGGCCGCATCGAGCGTGACGAT
TGGGTCGGCCAATCCAGAGTCCTCGCAGACATGCCCGGCGCAGCGCCCCGGCCAGAGCTGGCCTGA

Upstream 100 bases:

>100_bases
GACGGGCGTGCCCGAAACCGCCGGATCGAAATCCGAATTATCAGGCCAGGCGAATGAGCCCCCTGATCACCCCTAGCGCG
CCTGCCGGCGGAGATTGACC

Downstream 100 bases:

>100_bases
ACTGCCCTTGCGGAATGGGTTGGCGAGGCATGTCGCAACCGCCTAGTCTGCCGCAAAACTGGGTGCCCCATGGCCACCCG
CCACCGGGAGATACCTGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 581; Mature: 581

Protein sequence:

>581_residues
MWFLLIQIFFFMCVSAALGAALAWWWLRRRFIDVTETHADLTRQVETAIADGRALKKEDIDASLTTAFAAYQPPQPDFLP
LLERLELLEKQLAMPDPDMGSLKDRIGAIEQAVSTTSASIASLRSIHLAAISSNIKDVADRVDGIKMPDVESIHQRVASL
ADTVASNRPDLTPLQDRLAALETQISNFKIPEVDLGPVHSGLARLDLSLSELQPPEIDLRPIETRLSKLEELLDALDHKD
SFALLAGDVATVSAELAAISGEVANVSTGLTTVSTGLTRVSEEVGSVGEAVSRIEIPESADLDPIHNRLAEIDASLMDRF
ALVQERISATTPLNDALIATLAAVEADLDVVASRRGPDLEPLFAQLASLDSSVGTIRNELRSQTRLETIERRLLTIQEAV
NNPPSNEVSREDLSALEDRLTSIEYGVTALHHMLRGRGDNGRAESEAPRPRAEAAGYEARTSTRTTRSLPTAEMQAVASR
RAEAIAEARKPDDEANLLTHAAFGEGDDLAQIVGVGPILTELLHDVGVFYFWQIAEWSDEDVAYVDEKLLHFKGRIERDD
WVGQSRVLADMPGAAPRPELA

Sequences:

>Translated_581_residues
MWFLLIQIFFFMCVSAALGAALAWWWLRRRFIDVTETHADLTRQVETAIADGRALKKEDIDASLTTAFAAYQPPQPDFLP
LLERLELLEKQLAMPDPDMGSLKDRIGAIEQAVSTTSASIASLRSIHLAAISSNIKDVADRVDGIKMPDVESIHQRVASL
ADTVASNRPDLTPLQDRLAALETQISNFKIPEVDLGPVHSGLARLDLSLSELQPPEIDLRPIETRLSKLEELLDALDHKD
SFALLAGDVATVSAELAAISGEVANVSTGLTTVSTGLTRVSEEVGSVGEAVSRIEIPESADLDPIHNRLAEIDASLMDRF
ALVQERISATTPLNDALIATLAAVEADLDVVASRRGPDLEPLFAQLASLDSSVGTIRNELRSQTRLETIERRLLTIQEAV
NNPPSNEVSREDLSALEDRLTSIEYGVTALHHMLRGRGDNGRAESEAPRPRAEAAGYEARTSTRTTRSLPTAEMQAVASR
RAEAIAEARKPDDEANLLTHAAFGEGDDLAQIVGVGPILTELLHDVGVFYFWQIAEWSDEDVAYVDEKLLHFKGRIERDD
WVGQSRVLADMPGAAPRPELA
>Mature_581_residues
MWFLLIQIFFFMCVSAALGAALAWWWLRRRFIDVTETHADLTRQVETAIADGRALKKEDIDASLTTAFAAYQPPQPDFLP
LLERLELLEKQLAMPDPDMGSLKDRIGAIEQAVSTTSASIASLRSIHLAAISSNIKDVADRVDGIKMPDVESIHQRVASL
ADTVASNRPDLTPLQDRLAALETQISNFKIPEVDLGPVHSGLARLDLSLSELQPPEIDLRPIETRLSKLEELLDALDHKD
SFALLAGDVATVSAELAAISGEVANVSTGLTTVSTGLTRVSEEVGSVGEAVSRIEIPESADLDPIHNRLAEIDASLMDRF
ALVQERISATTPLNDALIATLAAVEADLDVVASRRGPDLEPLFAQLASLDSSVGTIRNELRSQTRLETIERRLLTIQEAV
NNPPSNEVSREDLSALEDRLTSIEYGVTALHHMLRGRGDNGRAESEAPRPRAEAAGYEARTSTRTTRSLPTAEMQAVASR
RAEAIAEARKPDDEANLLTHAAFGEGDDLAQIVGVGPILTELLHDVGVFYFWQIAEWSDEDVAYVDEKLLHFKGRIERDD
WVGQSRVLADMPGAAPRPELA

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: NA

Molecular weight: Translated: 63408; Mature: 63408

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFLLIQIFFFMCVSAALGAALAWWWLRRRFIDVTETHADLTRQVETAIADGRALKKEDI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
DASLTTAFAAYQPPQPDFLPLLERLELLEKQLAMPDPDMGSLKDRIGAIEQAVSTTSASI
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ASLRSIHLAAISSNIKDVADRVDGIKMPDVESIHQRVASLADTVASNRPDLTPLQDRLAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LETQISNFKIPEVDLGPVHSGLARLDLSLSELQPPEIDLRPIETRLSKLEELLDALDHKD
HHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
SFALLAGDVATVSAELAAISGEVANVSTGLTTVSTGLTRVSEEVGSVGEAVSRIEIPESA
CCEEHCCHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DLDPIHNRLAEIDASLMDRFALVQERISATTPLNDALIATLAAVEADLDVVASRRGPDLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
PLFAQLASLDSSVGTIRNELRSQTRLETIERRLLTIQEAVNNPPSNEVSREDLSALEDRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
TSIEYGVTALHHMLRGRGDNGRAESEAPRPRAEAAGYEARTSTRTTRSLPTAEMQAVASR
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHCCCCHHHCCCHHHHHHHHHH
RAEAIAEARKPDDEANLLTHAAFGEGDDLAQIVGVGPILTELLHDVGVFYFWQIAEWSDE
HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC
DVAYVDEKLLHFKGRIERDDWVGQSRVLADMPGAAPRPELA
HHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MWFLLIQIFFFMCVSAALGAALAWWWLRRRFIDVTETHADLTRQVETAIADGRALKKEDI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
DASLTTAFAAYQPPQPDFLPLLERLELLEKQLAMPDPDMGSLKDRIGAIEQAVSTTSASI
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ASLRSIHLAAISSNIKDVADRVDGIKMPDVESIHQRVASLADTVASNRPDLTPLQDRLAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LETQISNFKIPEVDLGPVHSGLARLDLSLSELQPPEIDLRPIETRLSKLEELLDALDHKD
HHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
SFALLAGDVATVSAELAAISGEVANVSTGLTTVSTGLTRVSEEVGSVGEAVSRIEIPESA
CCEEHCCHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DLDPIHNRLAEIDASLMDRFALVQERISATTPLNDALIATLAAVEADLDVVASRRGPDLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
PLFAQLASLDSSVGTIRNELRSQTRLETIERRLLTIQEAVNNPPSNEVSREDLSALEDRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
TSIEYGVTALHHMLRGRGDNGRAESEAPRPRAEAAGYEARTSTRTTRSLPTAEMQAVASR
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHCCCCHHHCCCHHHHHHHHHH
RAEAIAEARKPDDEANLLTHAAFGEGDDLAQIVGVGPILTELLHDVGVFYFWQIAEWSDE
HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC
DVAYVDEKLLHFKGRIERDDWVGQSRVLADMPGAAPRPELA
HHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA