| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is 114799613
Identifier: 114799613
GI number: 114799613
Start: 1609335
End: 1611104
Strand: Direct
Name: 114799613
Synonym: HNE_1577
Alternate gene names: NA
Gene position: 1609335-1611104 (Clockwise)
Preceding gene: 114798428
Following gene: 114797912
Centisome position: 43.44
GC content: 58.14
Gene sequence:
>1770_bases ATGAACAATCTGGAACTTGGGATCATTGGCAACGGAACGATTGCTGCCTTGATTGATGAAGCGGGTGAAATCGGCTGGCT TTGCTTGCCGAGGCTCGATGGAGAACCTGTGTTCAACAGTCTCGTTGGCGGCGGGGGAAAGTTCGGCGTTGAATTGGCCG GGCTGTCGGGCGCCCATCATATCTATCGGCGCAATACGGCGATTCTCGAAACAACCCTTGAGGCCGAAGACGGCTCAGCG GTTTTGATCACCGACTTTGCCCCGAGGTTTACAGACAGGGGACGGATGTTCCGGCCGGCTTCTGTCGTCAGACGGATTAC ACCCTTGCGCGGGATGCCGCGTATTCGGCTTAAGGTTTCGGGAGAAACTGGCCGTGGCAAAGGCCAGATGCTTTCACGCC GCGGCGTATCGCATATCTCCTTCCTGGATGATGCATCGGGATTCCGCCTGACGACAGATGCGCCGGTGGCTTATGTTGCG CAGGAAACCGAGTTTGTGCTCGACCGCGACACAACCTTTATTCTCGGACCTGATGAGCCCTTATCCGATACGCCAGCCAA TCTCGCTTCAGATTGGCTCGCCCGAACGCAGGAACATTGGCAGGACTGGTCGCGGCGGCTTGCGACGCCGCCTGAATGGC AGGCGGCGGTCATACGCGCGGCAATCACGCTGAAGCTATGCGTATATGAAGAAACCGGCGGTATCGTCGCGGCCCTGACC ACCAGCATCCCTGAGCACGCAGGGTCGTCCAGAAACTGGGATTACCGCTTCTGCTGGCTGCGCGATGCTTACTTCACCGT CACGGCGTTAAACAGGCTGTCCGCGATGGGAACACTGGAGCGCTACTTGGCGTTCCTGCGAAACATTGTGGCGCATACAA AAGGCGGGCACATTCAGCCTGTCTACGGGATCGCTCTGGAAGAGCAGTTAACGGAAGATATTCCAGGTTATCTTCCGGGG TATCGGGGCATGGGGCCGGTGAGGTTTGGGAACCAGGCTGCAGAGCATGTTCAGCATGATGTATACGGGCACGTCGTGCT CGGCGCGGCGCAGGCCTTTCTGGACGAGCGTTTGCTTACCAAAGCTGGACCGATTGAATTTGAGCACTTTGAGGCCGTTG GCCGGCGTGCCTACGAAGTCTATCAGATGCCCGATGCGGGGATTTGGGAGTATCGGGGCAGGGAGGCGGTGCATACATCG TCGGCGATCATGTGTTGGGCCGCCTGTGACCGGCTGGCGCGTGTTGCATCCGCGCTTGGTTTGAACGACCGCGCCGTGCA TTGGTCAGATTGCGCGACTGAAATGCGCAGCGTCATTCTGGAGAAAGCCTGGAATGCTGAGCGCGACGCCTTTACAGGAG CCTTTGGCGGTGCCGCGCTTGATGCATCGGTTCTGCTTATGGCGGAAATTGGGTTCATAGATCCGATGGACCCGCGATTC AGATCGACCGTCGATCGGATCGACGAAGAGTTGCGCGTAGGAAATCATGTTTTCCGATACCGAGCGCCCGATGACTTCGG AACGCCTGAAACAGCCTTCACCGCCTGCACATTCTGGCATATCGATGCGTTGGCGCGAACCGGCCAGCTCGACAAGGCAC GCGCGATGTTTGAGGCAGTGCTGGCGCAACGCACACGCCTTGGGCTTCTCTCCGAAGACGTTGATCCGCAGACAGGAGAG CTCTGGGGAAATTTCCCGCAGACCTATTCGATGGTCGGTATCATCAATGCGGCCTCACGCCTGAGTTGCGATTGGGACGC GATCGTGTGA
Upstream 100 bases:
>100_bases TCGGAGGCACTGCCATCAAGGTAGGCGCTGGGGCGACGGCTGCGCCCTACCGGCTGGCCGACCCGGCAGCGGTTTGGGAC TGGCTCAAGAGAGGACTGAC
Downstream 100 bases:
>100_bases TGCGCACTCCCCCATTGGGAGATGCGTGCTACTTTCGCTTTTGACGCTTATGTTTCGTCAGGAACTGATGGATGATTTCA GCTGCGCGCGCAGAAGGTGT
Product: glycosy hydrolase family protein
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycoside Hydrolase Family; Glycosy Hydrolase Family Protein; Glucoamylase; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glycosyl Hydrolase Protein; Glucoamylase Or Related Glycosyl Hydrolase; Trehalose 6-Phosphatase; Trehalose-Phosphatase/Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Family Protein; Glucoamylase-Related Protein Trehalase
Number of amino acids: Translated: 589; Mature: 589
Protein sequence:
>589_residues MNNLELGIIGNGTIAALIDEAGEIGWLCLPRLDGEPVFNSLVGGGGKFGVELAGLSGAHHIYRRNTAILETTLEAEDGSA VLITDFAPRFTDRGRMFRPASVVRRITPLRGMPRIRLKVSGETGRGKGQMLSRRGVSHISFLDDASGFRLTTDAPVAYVA QETEFVLDRDTTFILGPDEPLSDTPANLASDWLARTQEHWQDWSRRLATPPEWQAAVIRAAITLKLCVYEETGGIVAALT TSIPEHAGSSRNWDYRFCWLRDAYFTVTALNRLSAMGTLERYLAFLRNIVAHTKGGHIQPVYGIALEEQLTEDIPGYLPG YRGMGPVRFGNQAAEHVQHDVYGHVVLGAAQAFLDERLLTKAGPIEFEHFEAVGRRAYEVYQMPDAGIWEYRGREAVHTS SAIMCWAACDRLARVASALGLNDRAVHWSDCATEMRSVILEKAWNAERDAFTGAFGGAALDASVLLMAEIGFIDPMDPRF RSTVDRIDEELRVGNHVFRYRAPDDFGTPETAFTACTFWHIDALARTGQLDKARAMFEAVLAQRTRLGLLSEDVDPQTGE LWGNFPQTYSMVGIINAASRLSCDWDAIV
Sequences:
>Translated_589_residues MNNLELGIIGNGTIAALIDEAGEIGWLCLPRLDGEPVFNSLVGGGGKFGVELAGLSGAHHIYRRNTAILETTLEAEDGSA VLITDFAPRFTDRGRMFRPASVVRRITPLRGMPRIRLKVSGETGRGKGQMLSRRGVSHISFLDDASGFRLTTDAPVAYVA QETEFVLDRDTTFILGPDEPLSDTPANLASDWLARTQEHWQDWSRRLATPPEWQAAVIRAAITLKLCVYEETGGIVAALT TSIPEHAGSSRNWDYRFCWLRDAYFTVTALNRLSAMGTLERYLAFLRNIVAHTKGGHIQPVYGIALEEQLTEDIPGYLPG YRGMGPVRFGNQAAEHVQHDVYGHVVLGAAQAFLDERLLTKAGPIEFEHFEAVGRRAYEVYQMPDAGIWEYRGREAVHTS SAIMCWAACDRLARVASALGLNDRAVHWSDCATEMRSVILEKAWNAERDAFTGAFGGAALDASVLLMAEIGFIDPMDPRF RSTVDRIDEELRVGNHVFRYRAPDDFGTPETAFTACTFWHIDALARTGQLDKARAMFEAVLAQRTRLGLLSEDVDPQTGE LWGNFPQTYSMVGIINAASRLSCDWDAIV >Mature_589_residues MNNLELGIIGNGTIAALIDEAGEIGWLCLPRLDGEPVFNSLVGGGGKFGVELAGLSGAHHIYRRNTAILETTLEAEDGSA VLITDFAPRFTDRGRMFRPASVVRRITPLRGMPRIRLKVSGETGRGKGQMLSRRGVSHISFLDDASGFRLTTDAPVAYVA QETEFVLDRDTTFILGPDEPLSDTPANLASDWLARTQEHWQDWSRRLATPPEWQAAVIRAAITLKLCVYEETGGIVAALT TSIPEHAGSSRNWDYRFCWLRDAYFTVTALNRLSAMGTLERYLAFLRNIVAHTKGGHIQPVYGIALEEQLTEDIPGYLPG YRGMGPVRFGNQAAEHVQHDVYGHVVLGAAQAFLDERLLTKAGPIEFEHFEAVGRRAYEVYQMPDAGIWEYRGREAVHTS SAIMCWAACDRLARVASALGLNDRAVHWSDCATEMRSVILEKAWNAERDAFTGAFGGAALDASVLLMAEIGFIDPMDPRF RSTVDRIDEELRVGNHVFRYRAPDDFGTPETAFTACTFWHIDALARTGQLDKARAMFEAVLAQRTRLGLLSEDVDPQTGE LWGNFPQTYSMVGIINAASRLSCDWDAIV
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65099; Mature: 65099
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNLELGIIGNGTIAALIDEAGEIGWLCLPRLDGEPVFNSLVGGGGKFGVELAGLSGAHH CCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEECCCCHHH IYRRNTAILETTLEAEDGSAVLITDFAPRFTDRGRMFRPASVVRRITPLRGMPRIRLKVS HHHCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC GETGRGKGQMLSRRGVSHISFLDDASGFRLTTDAPVAYVAQETEFVLDRDTTFILGPDEP CCCCCCCHHHHHHCCCCCEEECCCCCCCEEECCCCEEEEECCCEEEEECCCEEEECCCCC LSDTPANLASDWLARTQEHWQDWSRRLATPPEWQAAVIRAAITLKLCVYEETGGIVAALT CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEEEEECCCCEEEEEE TSIPEHAGSSRNWDYRFCWLRDAYFTVTALNRLSAMGTLERYLAFLRNIVAHTKGGHIQP HHCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE VYGIALEEQLTEDIPGYLPGYRGMGPVRFGNQAAEHVQHDVYGHVVLGAAQAFLDERLLT EHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAGPIEFEHFEAVGRRAYEVYQMPDAGIWEYRGREAVHTSSAIMCWAACDRLARVASALG HCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC LNDRAVHWSDCATEMRSVILEKAWNAERDAFTGAFGGAALDASVLLMAEIGFIDPMDPRF CCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHH RSTVDRIDEELRVGNHVFRYRAPDDFGTPETAFTACTFWHIDALARTGQLDKARAMFEAV HHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LAQRTRLGLLSEDVDPQTGELWGNFPQTYSMVGIINAASRLSCDWDAIV HHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCC >Mature Secondary Structure MNNLELGIIGNGTIAALIDEAGEIGWLCLPRLDGEPVFNSLVGGGGKFGVELAGLSGAHH CCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEECCCCHHH IYRRNTAILETTLEAEDGSAVLITDFAPRFTDRGRMFRPASVVRRITPLRGMPRIRLKVS HHHCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC GETGRGKGQMLSRRGVSHISFLDDASGFRLTTDAPVAYVAQETEFVLDRDTTFILGPDEP CCCCCCCHHHHHHCCCCCEEECCCCCCCEEECCCCEEEEECCCEEEEECCCEEEECCCCC LSDTPANLASDWLARTQEHWQDWSRRLATPPEWQAAVIRAAITLKLCVYEETGGIVAALT CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEEEEECCCCEEEEEE TSIPEHAGSSRNWDYRFCWLRDAYFTVTALNRLSAMGTLERYLAFLRNIVAHTKGGHIQP HHCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE VYGIALEEQLTEDIPGYLPGYRGMGPVRFGNQAAEHVQHDVYGHVVLGAAQAFLDERLLT EHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAGPIEFEHFEAVGRRAYEVYQMPDAGIWEYRGREAVHTSSAIMCWAACDRLARVASALG HCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC LNDRAVHWSDCATEMRSVILEKAWNAERDAFTGAFGGAALDASVLLMAEIGFIDPMDPRF CCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHH RSTVDRIDEELRVGNHVFRYRAPDDFGTPETAFTACTFWHIDALARTGQLDKARAMFEAV HHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LAQRTRLGLLSEDVDPQTGELWGNFPQTYSMVGIINAASRLSCDWDAIV HHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA