Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

Click here to switch to the map view.

The map label for this gene is 114799613

Identifier: 114799613

GI number: 114799613

Start: 1609335

End: 1611104

Strand: Direct

Name: 114799613

Synonym: HNE_1577

Alternate gene names: NA

Gene position: 1609335-1611104 (Clockwise)

Preceding gene: 114798428

Following gene: 114797912

Centisome position: 43.44

GC content: 58.14

Gene sequence:

>1770_bases
ATGAACAATCTGGAACTTGGGATCATTGGCAACGGAACGATTGCTGCCTTGATTGATGAAGCGGGTGAAATCGGCTGGCT
TTGCTTGCCGAGGCTCGATGGAGAACCTGTGTTCAACAGTCTCGTTGGCGGCGGGGGAAAGTTCGGCGTTGAATTGGCCG
GGCTGTCGGGCGCCCATCATATCTATCGGCGCAATACGGCGATTCTCGAAACAACCCTTGAGGCCGAAGACGGCTCAGCG
GTTTTGATCACCGACTTTGCCCCGAGGTTTACAGACAGGGGACGGATGTTCCGGCCGGCTTCTGTCGTCAGACGGATTAC
ACCCTTGCGCGGGATGCCGCGTATTCGGCTTAAGGTTTCGGGAGAAACTGGCCGTGGCAAAGGCCAGATGCTTTCACGCC
GCGGCGTATCGCATATCTCCTTCCTGGATGATGCATCGGGATTCCGCCTGACGACAGATGCGCCGGTGGCTTATGTTGCG
CAGGAAACCGAGTTTGTGCTCGACCGCGACACAACCTTTATTCTCGGACCTGATGAGCCCTTATCCGATACGCCAGCCAA
TCTCGCTTCAGATTGGCTCGCCCGAACGCAGGAACATTGGCAGGACTGGTCGCGGCGGCTTGCGACGCCGCCTGAATGGC
AGGCGGCGGTCATACGCGCGGCAATCACGCTGAAGCTATGCGTATATGAAGAAACCGGCGGTATCGTCGCGGCCCTGACC
ACCAGCATCCCTGAGCACGCAGGGTCGTCCAGAAACTGGGATTACCGCTTCTGCTGGCTGCGCGATGCTTACTTCACCGT
CACGGCGTTAAACAGGCTGTCCGCGATGGGAACACTGGAGCGCTACTTGGCGTTCCTGCGAAACATTGTGGCGCATACAA
AAGGCGGGCACATTCAGCCTGTCTACGGGATCGCTCTGGAAGAGCAGTTAACGGAAGATATTCCAGGTTATCTTCCGGGG
TATCGGGGCATGGGGCCGGTGAGGTTTGGGAACCAGGCTGCAGAGCATGTTCAGCATGATGTATACGGGCACGTCGTGCT
CGGCGCGGCGCAGGCCTTTCTGGACGAGCGTTTGCTTACCAAAGCTGGACCGATTGAATTTGAGCACTTTGAGGCCGTTG
GCCGGCGTGCCTACGAAGTCTATCAGATGCCCGATGCGGGGATTTGGGAGTATCGGGGCAGGGAGGCGGTGCATACATCG
TCGGCGATCATGTGTTGGGCCGCCTGTGACCGGCTGGCGCGTGTTGCATCCGCGCTTGGTTTGAACGACCGCGCCGTGCA
TTGGTCAGATTGCGCGACTGAAATGCGCAGCGTCATTCTGGAGAAAGCCTGGAATGCTGAGCGCGACGCCTTTACAGGAG
CCTTTGGCGGTGCCGCGCTTGATGCATCGGTTCTGCTTATGGCGGAAATTGGGTTCATAGATCCGATGGACCCGCGATTC
AGATCGACCGTCGATCGGATCGACGAAGAGTTGCGCGTAGGAAATCATGTTTTCCGATACCGAGCGCCCGATGACTTCGG
AACGCCTGAAACAGCCTTCACCGCCTGCACATTCTGGCATATCGATGCGTTGGCGCGAACCGGCCAGCTCGACAAGGCAC
GCGCGATGTTTGAGGCAGTGCTGGCGCAACGCACACGCCTTGGGCTTCTCTCCGAAGACGTTGATCCGCAGACAGGAGAG
CTCTGGGGAAATTTCCCGCAGACCTATTCGATGGTCGGTATCATCAATGCGGCCTCACGCCTGAGTTGCGATTGGGACGC
GATCGTGTGA

Upstream 100 bases:

>100_bases
TCGGAGGCACTGCCATCAAGGTAGGCGCTGGGGCGACGGCTGCGCCCTACCGGCTGGCCGACCCGGCAGCGGTTTGGGAC
TGGCTCAAGAGAGGACTGAC

Downstream 100 bases:

>100_bases
TGCGCACTCCCCCATTGGGAGATGCGTGCTACTTTCGCTTTTGACGCTTATGTTTCGTCAGGAACTGATGGATGATTTCA
GCTGCGCGCGCAGAAGGTGT

Product: glycosy hydrolase family protein

Products: NA

Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycoside Hydrolase Family; Glycosy Hydrolase Family Protein; Glucoamylase; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glycosyl Hydrolase Protein; Glucoamylase Or Related Glycosyl Hydrolase; Trehalose 6-Phosphatase; Trehalose-Phosphatase/Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Family Protein; Glucoamylase-Related Protein Trehalase

Number of amino acids: Translated: 589; Mature: 589

Protein sequence:

>589_residues
MNNLELGIIGNGTIAALIDEAGEIGWLCLPRLDGEPVFNSLVGGGGKFGVELAGLSGAHHIYRRNTAILETTLEAEDGSA
VLITDFAPRFTDRGRMFRPASVVRRITPLRGMPRIRLKVSGETGRGKGQMLSRRGVSHISFLDDASGFRLTTDAPVAYVA
QETEFVLDRDTTFILGPDEPLSDTPANLASDWLARTQEHWQDWSRRLATPPEWQAAVIRAAITLKLCVYEETGGIVAALT
TSIPEHAGSSRNWDYRFCWLRDAYFTVTALNRLSAMGTLERYLAFLRNIVAHTKGGHIQPVYGIALEEQLTEDIPGYLPG
YRGMGPVRFGNQAAEHVQHDVYGHVVLGAAQAFLDERLLTKAGPIEFEHFEAVGRRAYEVYQMPDAGIWEYRGREAVHTS
SAIMCWAACDRLARVASALGLNDRAVHWSDCATEMRSVILEKAWNAERDAFTGAFGGAALDASVLLMAEIGFIDPMDPRF
RSTVDRIDEELRVGNHVFRYRAPDDFGTPETAFTACTFWHIDALARTGQLDKARAMFEAVLAQRTRLGLLSEDVDPQTGE
LWGNFPQTYSMVGIINAASRLSCDWDAIV

Sequences:

>Translated_589_residues
MNNLELGIIGNGTIAALIDEAGEIGWLCLPRLDGEPVFNSLVGGGGKFGVELAGLSGAHHIYRRNTAILETTLEAEDGSA
VLITDFAPRFTDRGRMFRPASVVRRITPLRGMPRIRLKVSGETGRGKGQMLSRRGVSHISFLDDASGFRLTTDAPVAYVA
QETEFVLDRDTTFILGPDEPLSDTPANLASDWLARTQEHWQDWSRRLATPPEWQAAVIRAAITLKLCVYEETGGIVAALT
TSIPEHAGSSRNWDYRFCWLRDAYFTVTALNRLSAMGTLERYLAFLRNIVAHTKGGHIQPVYGIALEEQLTEDIPGYLPG
YRGMGPVRFGNQAAEHVQHDVYGHVVLGAAQAFLDERLLTKAGPIEFEHFEAVGRRAYEVYQMPDAGIWEYRGREAVHTS
SAIMCWAACDRLARVASALGLNDRAVHWSDCATEMRSVILEKAWNAERDAFTGAFGGAALDASVLLMAEIGFIDPMDPRF
RSTVDRIDEELRVGNHVFRYRAPDDFGTPETAFTACTFWHIDALARTGQLDKARAMFEAVLAQRTRLGLLSEDVDPQTGE
LWGNFPQTYSMVGIINAASRLSCDWDAIV
>Mature_589_residues
MNNLELGIIGNGTIAALIDEAGEIGWLCLPRLDGEPVFNSLVGGGGKFGVELAGLSGAHHIYRRNTAILETTLEAEDGSA
VLITDFAPRFTDRGRMFRPASVVRRITPLRGMPRIRLKVSGETGRGKGQMLSRRGVSHISFLDDASGFRLTTDAPVAYVA
QETEFVLDRDTTFILGPDEPLSDTPANLASDWLARTQEHWQDWSRRLATPPEWQAAVIRAAITLKLCVYEETGGIVAALT
TSIPEHAGSSRNWDYRFCWLRDAYFTVTALNRLSAMGTLERYLAFLRNIVAHTKGGHIQPVYGIALEEQLTEDIPGYLPG
YRGMGPVRFGNQAAEHVQHDVYGHVVLGAAQAFLDERLLTKAGPIEFEHFEAVGRRAYEVYQMPDAGIWEYRGREAVHTS
SAIMCWAACDRLARVASALGLNDRAVHWSDCATEMRSVILEKAWNAERDAFTGAFGGAALDASVLLMAEIGFIDPMDPRF
RSTVDRIDEELRVGNHVFRYRAPDDFGTPETAFTACTFWHIDALARTGQLDKARAMFEAVLAQRTRLGLLSEDVDPQTGE
LWGNFPQTYSMVGIINAASRLSCDWDAIV

Specific function: Unknown

COG id: COG3387

COG function: function code G; Glucoamylase and related glycosyl hydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65099; Mature: 65099

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLELGIIGNGTIAALIDEAGEIGWLCLPRLDGEPVFNSLVGGGGKFGVELAGLSGAHH
CCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEECCCCHHH
IYRRNTAILETTLEAEDGSAVLITDFAPRFTDRGRMFRPASVVRRITPLRGMPRIRLKVS
HHHCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC
GETGRGKGQMLSRRGVSHISFLDDASGFRLTTDAPVAYVAQETEFVLDRDTTFILGPDEP
CCCCCCCHHHHHHCCCCCEEECCCCCCCEEECCCCEEEEECCCEEEEECCCEEEECCCCC
LSDTPANLASDWLARTQEHWQDWSRRLATPPEWQAAVIRAAITLKLCVYEETGGIVAALT
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEEEEECCCCEEEEEE
TSIPEHAGSSRNWDYRFCWLRDAYFTVTALNRLSAMGTLERYLAFLRNIVAHTKGGHIQP
HHCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
VYGIALEEQLTEDIPGYLPGYRGMGPVRFGNQAAEHVQHDVYGHVVLGAAQAFLDERLLT
EHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAGPIEFEHFEAVGRRAYEVYQMPDAGIWEYRGREAVHTSSAIMCWAACDRLARVASALG
HCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
LNDRAVHWSDCATEMRSVILEKAWNAERDAFTGAFGGAALDASVLLMAEIGFIDPMDPRF
CCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
RSTVDRIDEELRVGNHVFRYRAPDDFGTPETAFTACTFWHIDALARTGQLDKARAMFEAV
HHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LAQRTRLGLLSEDVDPQTGELWGNFPQTYSMVGIINAASRLSCDWDAIV
HHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure
MNNLELGIIGNGTIAALIDEAGEIGWLCLPRLDGEPVFNSLVGGGGKFGVELAGLSGAHH
CCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEECCCCHHH
IYRRNTAILETTLEAEDGSAVLITDFAPRFTDRGRMFRPASVVRRITPLRGMPRIRLKVS
HHHCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC
GETGRGKGQMLSRRGVSHISFLDDASGFRLTTDAPVAYVAQETEFVLDRDTTFILGPDEP
CCCCCCCHHHHHHCCCCCEEECCCCCCCEEECCCCEEEEECCCEEEEECCCEEEECCCCC
LSDTPANLASDWLARTQEHWQDWSRRLATPPEWQAAVIRAAITLKLCVYEETGGIVAALT
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEEEEECCCCEEEEEE
TSIPEHAGSSRNWDYRFCWLRDAYFTVTALNRLSAMGTLERYLAFLRNIVAHTKGGHIQP
HHCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
VYGIALEEQLTEDIPGYLPGYRGMGPVRFGNQAAEHVQHDVYGHVVLGAAQAFLDERLLT
EHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAGPIEFEHFEAVGRRAYEVYQMPDAGIWEYRGREAVHTSSAIMCWAACDRLARVASALG
HCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
LNDRAVHWSDCATEMRSVILEKAWNAERDAFTGAFGGAALDASVLLMAEIGFIDPMDPRF
CCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
RSTVDRIDEELRVGNHVFRYRAPDDFGTPETAFTACTFWHIDALARTGQLDKARAMFEAV
HHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LAQRTRLGLLSEDVDPQTGELWGNFPQTYSMVGIINAASRLSCDWDAIV
HHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA