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The map label for this gene is rpoZ

Identifier: 114799587

GI number: 114799587

Start: 893387

End: 893737

Strand: Direct

Name: rpoZ

Synonym: HNE_0872

Alternate gene names: 114799587

Gene position: 893387-893737 (Clockwise)

Preceding gene: 114797589

Following gene: 114798559

Centisome position: 24.11

GC content: 60.4

Gene sequence:

>351_bases
ATGGCCCGCGTTACCGTAGAAGACTGCATCCAGAAGGTTCCCAACCGCTTCGAGCTCGTACTGCTCGCAGCCCATCGTGC
ACGCATGATCCGTGAAGGATCGCCGCTGACGATTGACCGGGACAATGACAAGGACCCAGTCGTTTCCCTGCGTGAAATCG
CCGAGACCTCGATCGACCTGAAAGTCGTCAAGGAAGCCCTCATCTCCAACCTGCAGGACATCCGGCCCGGCGAAGAGAAT
GAGCGTGAAGCTGACCGTGTCGCCCTTCAGGCTGCGCCTGCAGCGACGGAAGACGATGTTCTGCGCGCCTATCAGGCAGA
ACTCGAATCCGGGCGCGACGACCGGCTCTAG

Upstream 100 bases:

>100_bases
ACCGTCCGGAATACCGATCCCTTGCAGACTCTGCAAGGACGGGTTGCCGTGGCGTGCTGCAGCGCATATAAAGGGCGGTT
CTTCAGGAGAATAACCCCGT

Downstream 100 bases:

>100_bases
GAGACTCAATGGACGGCAGCGCCCTTTCCGGACCGGAAAAAGGGGCTGGCACAGGGGCTGGCAAACCAGCTCCTGCCAGC
GACGCTGCGCCTGAACTTCC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MARVTVEDCIQKVPNRFELVLLAAHRARMIREGSPLTIDRDNDKDPVVSLREIAETSIDLKVVKEALISNLQDIRPGEEN
EREADRVALQAAPAATEDDVLRAYQAELESGRDDRL

Sequences:

>Translated_116_residues
MARVTVEDCIQKVPNRFELVLLAAHRARMIREGSPLTIDRDNDKDPVVSLREIAETSIDLKVVKEALISNLQDIRPGEEN
EREADRVALQAAPAATEDDVLRAYQAELESGRDDRL
>Mature_115_residues
ARVTVEDCIQKVPNRFELVLLAAHRARMIREGSPLTIDRDNDKDPVVSLREIAETSIDLKVVKEALISNLQDIRPGEENE
READRVALQAAPAATEDDVLRAYQAELESGRDDRL

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=65, Percent_Identity=49.2307692307692, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_HYPNA (Q0C3U4)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_759599.1
- STRING:   Q0C3U4
- GeneID:   4289083
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_0872
- NMPDR:   fig|228405.5.peg.852
- TIGR:   HNE_0872
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   HRARMIR
- ProtClustDB:   PRK00392
- BioCyc:   HNEP81032:HNE_0872-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 13036; Mature: 12905

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIQKVPNRFELVLLAAHRARMIREGSPLTIDRDNDKDPVVSLREIAETSIDL
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH
KVVKEALISNLQDIRPGEENEREADRVALQAAPAATEDDVLRAYQAELESGRDDRL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIQKVPNRFELVLLAAHRARMIREGSPLTIDRDNDKDPVVSLREIAETSIDL
CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH
KVVKEALISNLQDIRPGEENEREADRVALQAAPAATEDDVLRAYQAELESGRDDRL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA