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The map label for this gene is 114799525

Identifier: 114799525

GI number: 114799525

Start: 97041

End: 97478

Strand: Direct

Name: 114799525

Synonym: HNE_0108

Alternate gene names: NA

Gene position: 97041-97478 (Clockwise)

Preceding gene: 114800455

Following gene: 114798099

Centisome position: 2.62

GC content: 57.53

Gene sequence:

>438_bases
ATGTCAGAAAGCAAACTGCCGAGCGATATCGACCGGGTCGTGGGGCAAAACATCCATCGCCAGCGGCGGAAGCTGAAGCT
CACCCAGGAGAAGCTGGGAGAGTTGCTAGGTTTGACGTTCCAGCAGGTCCAGAAGTACGAAAAAGGCGTGAACCGCGTCT
CCGCAGGCCGGCTTTACGAGATTGCCGGTGTCCTTGAGGTGCCGGTCGAGTTCTTCTTTGATGGCGCAGATACTGTTGTC
TCAAATGGAGTTGCCGAGCTAGCGGAAGATCTTGATGACACCCAGCTGGCGGTACTCTCCGACGAAGTTCTACAATTGAT
AGAGGCGTTTCAGAAAATTGAGGACGCTGCCCTGCGCGGCTCCCTGCTGGCGACTGTGCGTGCGGCGGCCTCAGCATTTG
ACACCCGCGCCAATTCCGACCGGAGCCGGGATGACTGA

Upstream 100 bases:

>100_bases
TTTTCTGGATATCGCTCTGTGTCTTCGCGGTGCTGGCCTTTCTGACGTGGAGGCGATAAGCCCTTCTCTTTAGGGAAACG
TCGGTACGTCCGGATTTGTC

Downstream 100 bases:

>100_bases
CACCAGAGATTCAGAGTTCCGGGATCGCCCATTGCGCAGCTTTGGCCGGACAGGCGGGCGCCCCCTGTCGCCGCGTCAGA
AAACCCTGATGGCGGAGAAG

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MSESKLPSDIDRVVGQNIHRQRRKLKLTQEKLGELLGLTFQQVQKYEKGVNRVSAGRLYEIAGVLEVPVEFFFDGADTVV
SNGVAELAEDLDDTQLAVLSDEVLQLIEAFQKIEDAALRGSLLATVRAAASAFDTRANSDRSRDD

Sequences:

>Translated_145_residues
MSESKLPSDIDRVVGQNIHRQRRKLKLTQEKLGELLGLTFQQVQKYEKGVNRVSAGRLYEIAGVLEVPVEFFFDGADTVV
SNGVAELAEDLDDTQLAVLSDEVLQLIEAFQKIEDAALRGSLLATVRAAASAFDTRANSDRSRDD
>Mature_144_residues
SESKLPSDIDRVVGQNIHRQRRKLKLTQEKLGELLGLTFQQVQKYEKGVNRVSAGRLYEIAGVLEVPVEFFFDGADTVVS
NGVAELAEDLDDTQLAVLSDEVLQLIEAFQKIEDAALRGSLLATVRAAASAFDTRANSDRSRDD

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 16008; Mature: 15877

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESKLPSDIDRVVGQNIHRQRRKLKLTQEKLGELLGLTFQQVQKYEKGVNRVSAGRLYE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAGVLEVPVEFFFDGADTVVSNGVAELAEDLDDTQLAVLSDEVLQLIEAFQKIEDAALRG
HHHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLATVRAAASAFDTRANSDRSRDD
HHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SESKLPSDIDRVVGQNIHRQRRKLKLTQEKLGELLGLTFQQVQKYEKGVNRVSAGRLYE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAGVLEVPVEFFFDGADTVVSNGVAELAEDLDDTQLAVLSDEVLQLIEAFQKIEDAALRG
HHHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLATVRAAASAFDTRANSDRSRDD
HHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868435 [H]