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The map label for this gene is phyR [H]

Identifier: 114799495

GI number: 114799495

Start: 3260814

End: 3261560

Strand: Direct

Name: phyR [H]

Synonym: HNE_3085

Alternate gene names: 114799495

Gene position: 3260814-3261560 (Clockwise)

Preceding gene: 114797586

Following gene: 114797416

Centisome position: 88.01

GC content: 56.89

Gene sequence:

>747_bases
ATGAAAATTTCCGAGGCGATTGAGCAGCAACTGCCCTATCTGCGCCGATATGGTCGCGGTGTGCTGGGCAGCGCCGCTCT
GGGCGACAGAGCTGTGGAAGCGATGCTGGAAGATCTGCTTGGCAACTTGCCCGACGCGATAGACAGGCCCAGCCTGTTCA
AACTTCTTGATCGCACCTTCGAACGCCTGCCGCGGCTGATCGATGCTCAGAATACGGGGGTGCAAGGCATATCCCCTCAA
CCGAGACGCGCCCTGCTGCTCACCGCAATGGAAGGTTTCAACACAGCCGAAGCGGGCATGGTCCTCGGCGTCAGCGCGGC
AAGGGTCGATGAACTGCTTGACTCCGCTGAGGTCGAACTTTCCGACATGCTCAAAAGCCGCATTTTCATCATTGAAGACG
AACCCCTGATCGCGGCAAGCCTATCCCAGCTGGTGAAATCCCTCGGACACAGCATTGCCGGCATTGCCGTTACACGCGAT
CAAGCCGTGCAGGCCGTATTGGAAACCAGGCCCGATCTGATACTTGCCGATATTCAGCTGGCGGACGGGTCGCAGGGTAC
CGAAGCCGTCAAGGAAATCTGGTCGGAATTTTCTGTCCCTGTCGTCTTCATCACAGCTTTTCCAGAACGGATGCTGACGG
GTTCGCCGGGAGAACCCGCCTTCCTCATTCCAAAACCGTTCAAGCCTGCGCAGGTAAAGGCGGTTGTGACGCAAGCTCTG
TTCATTCAATCAATGCGACAGAATTGA

Upstream 100 bases:

>100_bases
TTGGCGTGCATTGTGCCATTTCCTCACTCTTTCCAATCGCAACGCTTGCAGTAAGTTAGGGTCAAGGCGGCGCTCGACCA
GCCGCTGGGGGCAATATCAA

Downstream 100 bases:

>100_bases
ACCACTTATCCCGTTATCGCGCCATGTCGAGCCTGGATTGGTCCGGCTCATCCTGAAGGAAGGTGGCGGGAGACTCCGTG
CGCAGATAAAATCCCTTAGG

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKISEAIEQQLPYLRRYGRGVLGSAALGDRAVEAMLEDLLGNLPDAIDRPSLFKLLDRTFERLPRLIDAQNTGVQGISPQ
PRRALLLTAMEGFNTAEAGMVLGVSAARVDELLDSAEVELSDMLKSRIFIIEDEPLIAASLSQLVKSLGHSIAGIAVTRD
QAVQAVLETRPDLILADIQLADGSQGTEAVKEIWSEFSVPVVFITAFPERMLTGSPGEPAFLIPKPFKPAQVKAVVTQAL
FIQSMRQN

Sequences:

>Translated_248_residues
MKISEAIEQQLPYLRRYGRGVLGSAALGDRAVEAMLEDLLGNLPDAIDRPSLFKLLDRTFERLPRLIDAQNTGVQGISPQ
PRRALLLTAMEGFNTAEAGMVLGVSAARVDELLDSAEVELSDMLKSRIFIIEDEPLIAASLSQLVKSLGHSIAGIAVTRD
QAVQAVLETRPDLILADIQLADGSQGTEAVKEIWSEFSVPVVFITAFPERMLTGSPGEPAFLIPKPFKPAQVKAVVTQAL
FIQSMRQN
>Mature_248_residues
MKISEAIEQQLPYLRRYGRGVLGSAALGDRAVEAMLEDLLGNLPDAIDRPSLFKLLDRTFERLPRLIDAQNTGVQGISPQ
PRRALLLTAMEGFNTAEAGMVLGVSAARVDELLDSAEVELSDMLKSRIFIIEDEPLIAASLSQLVKSLGHSIAGIAVTRD
QAVQAVLETRPDLILADIQLADGSQGTEAVKEIWSEFSVPVVFITAFPERMLTGSPGEPAFLIPKPFKPAQVKAVVTQAL
FIQSMRQN

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 26949; Mature: 26949

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISEAIEQQLPYLRRYGRGVLGSAALGDRAVEAMLEDLLGNLPDAIDRPSLFKLLDRTF
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
ERLPRLIDAQNTGVQGISPQPRRALLLTAMEGFNTAEAGMVLGVSAARVDELLDSAEVEL
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCEECHHHHHHHHHHHHHHHHH
SDMLKSRIFIIEDEPLIAASLSQLVKSLGHSIAGIAVTRDQAVQAVLETRPDLILADIQL
HHHHHHCEEEECCCCHHHHHHHHHHHHHCCHHHHEEEHHHHHHHHHHHCCCCEEEEEEEE
ADGSQGTEAVKEIWSEFSVPVVFITAFPERMLTGSPGEPAFLIPKPFKPAQVKAVVTQAL
CCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHH
FIQSMRQN
HHHHHHCC
>Mature Secondary Structure
MKISEAIEQQLPYLRRYGRGVLGSAALGDRAVEAMLEDLLGNLPDAIDRPSLFKLLDRTF
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
ERLPRLIDAQNTGVQGISPQPRRALLLTAMEGFNTAEAGMVLGVSAARVDELLDSAEVEL
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCEECHHHHHHHHHHHHHHHHH
SDMLKSRIFIIEDEPLIAASLSQLVKSLGHSIAGIAVTRDQAVQAVLETRPDLILADIQL
HHHHHHCEEEECCCCHHHHHHHHHHHHHCCHHHHEEEHHHHHHHHHHHCCCCEEEEEEEE
ADGSQGTEAVKEIWSEFSVPVVFITAFPERMLTGSPGEPAFLIPKPFKPAQVKAVVTQAL
CCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHH
FIQSMRQN
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA