Click here to switch to the map view.

The map label for this gene is ybbJ [C]

Identifier: 114799456

GI number: 114799456

Start: 1063030

End: 1063494

Strand: Direct

Name: ybbJ [C]

Synonym: HNE_1054

Alternate gene names: 114799456

Gene position: 1063030-1063494 (Clockwise)

Preceding gene: 114799116

Following gene: 114799012

Centisome position: 28.69

GC content: 64.73

Gene sequence:

>465_bases
ATGGAAATTCTGCTGAGTGAACTGACTTGGTGGCACTGGGTTGCCCTGGGACTGGTGCTGTTCGGGATCGAGATGATGAC
AGGGACATTTGACCTGTTGATGATCTCGATTGCGGCGATACTGACGGCGCTGTTTGCCGGGCTGGCGCCTGACGGGCTGG
CCGGATGGCAGGGCCAGATGGCGGTGTTCGGCATTGCGGCAGTGGTGCTGGTGGCCGGTGGGCGGATGTTCCTTTCCCGG
CGGGGTCCGCCGCCGGAGCATCCGACGCTGAACAAGCGGATGGCCGGCCTTGTTGGCCAGCATGGGCAGGCGACGAAGGA
TTTCGTGGCCGGGTCCGGGCAGGTGCAGATCGGCGATACGGTCTGGGGCGCTGAAGCTGTGCCCGGCGAGCCGCCGATCC
TGGCGGGCGATACGGTCACGGTCAGCGCTACGGATGGCAATACGGCGATTGTGCGCAAGGGCTGA

Upstream 100 bases:

>100_bases
CGGACGCCGCGAAGAACACGACCGCCCCGCCGCGCCCGCAAGGCGCTGTGCCGCCGACCCGGCGTGAGGATTAGACCCGA
GCGCGCGAAGGAGGCTCCGG

Downstream 100 bases:

>100_bases
TCTGAAGCTATATGTGCAACGAAGAAACCCCTCCGGTGACGGAGGGGTTTTTGTTTGGGGCAACGCCCTTATCCTCCCCA
GCGGTGCGGGGGAGGTGGGG

Product: nodulation efficiency protein D family protein

Products: NA

Alternate protein names: Nodulation Protein Nfed C- Only

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MEILLSELTWWHWVALGLVLFGIEMMTGTFDLLMISIAAILTALFAGLAPDGLAGWQGQMAVFGIAAVVLVAGGRMFLSR
RGPPPEHPTLNKRMAGLVGQHGQATKDFVAGSGQVQIGDTVWGAEAVPGEPPILAGDTVTVSATDGNTAIVRKG

Sequences:

>Translated_154_residues
MEILLSELTWWHWVALGLVLFGIEMMTGTFDLLMISIAAILTALFAGLAPDGLAGWQGQMAVFGIAAVVLVAGGRMFLSR
RGPPPEHPTLNKRMAGLVGQHGQATKDFVAGSGQVQIGDTVWGAEAVPGEPPILAGDTVTVSATDGNTAIVRKG
>Mature_154_residues
MEILLSELTWWHWVALGLVLFGIEMMTGTFDLLMISIAAILTALFAGLAPDGLAGWQGQMAVFGIAAVVLVAGGRMFLSR
RGPPPEHPTLNKRMAGLVGQHGQATKDFVAGSGQVQIGDTVWGAEAVPGEPPILAGDTVTVSATDGNTAIVRKG

Specific function: Unknown

COG id: COG1585

COG function: function code OU; Membrane protein implicated in regulation of membrane protease activity

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16050; Mature: 16050

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILLSELTWWHWVALGLVLFGIEMMTGTFDLLMISIAAILTALFAGLAPDGLAGWQGQM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
AVFGIAAVVLVAGGRMFLSRRGPPPEHPTLNKRMAGLVGQHGQATKDFVAGSGQVQIGDT
HHHHHHHHHHHHCCHHEEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCEEECCC
VWGAEAVPGEPPILAGDTVTVSATDGNTAIVRKG
CCCCCCCCCCCCEEECCEEEEEECCCCEEEEECC
>Mature Secondary Structure
MEILLSELTWWHWVALGLVLFGIEMMTGTFDLLMISIAAILTALFAGLAPDGLAGWQGQM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
AVFGIAAVVLVAGGRMFLSRRGPPPEHPTLNKRMAGLVGQHGQATKDFVAGSGQVQIGDT
HHHHHHHHHHHHCCHHEEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCEEECCC
VWGAEAVPGEPPILAGDTVTVSATDGNTAIVRKG
CCCCCCCCCCCCEEECCEEEEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA