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The map label for this gene is cph2 [H]

Identifier: 114799344

GI number: 114799344

Start: 778903

End: 779886

Strand: Reverse

Name: cph2 [H]

Synonym: HNE_0769

Alternate gene names: 114799344

Gene position: 779886-778903 (Counterclockwise)

Preceding gene: 114797309

Following gene: 114799964

Centisome position: 21.05

GC content: 61.79

Gene sequence:

>984_bases
GTGTTCCAGCTCAGCGAGAAGTACAAGACCGCGCCCTTCCCCAATGCCTATGCCGTGTGGTTTGCCTATTCCACCAATGC
CGATCCGGCGCTGGTGGCGGAGATTGATGAGCTGCTGCTGGGGCAGGACGCGATTTCGGCCTATGACATTGAGCTGCTGT
TCCAGGCCTATCTGGCCGAAGAACAGAGCGTGTTTGCCACCCATGACATCAGCCAGGCGATTGGCGACGAGATTGACGAA
GTGCTCTCGGTGCTCGGCACGAGCCTGCAACAGAACACCGCCTTTTCAGAAACACTGTCGACGCTGGAGCAGGACCTGCC
TCAAGCCTCTTCGCCGGAGCAGTTCAACACGCTGGTTTCCGGACTGATCGAGGAAAACCGGCGCATGAATGCGATGACGC
AGGAGCTGAACCAGGGCCTGGCCCGGTCGCAGAGCCTGATCTCCACTTTAAGCGAACAGCTGGACGAAGTGCGCACGCAG
AGCCTGCGCGATCCGCTGACCGCCATTCCCAACCGCCGCGCCTTTGACAAGACGCTGGAAGAGGCGATGGACCATGCCGC
GCGCACGCATGAACCGCTATGCGTGGCGATGGCGGACCTCGACCATTTCAAGGCGCTCAACGATACCTTTGGCCACCCTG
CCGGCGATGTTGTGTTGCAGAATTTTGCGCGGCTGATTTCCGGCAGCGCCAACGAGCCCAGGCTTGTGGCGCGGTATGGC
GGCGAGGAGTTTGCGATCATCTTCCCCGGCAGCGACCTGATGGCGGCCTATAACCGGCTGGTGAACATCAAGCATACGCT
CAGCAAGACCGTGCATGAAGCCGAAGGCAGCGTCGGGCCCCTGCCCGCCGTGACCGCCTCGTTCGGTGTGGCGAAATATC
AGCCGGGCATGACCGCGCGCGAGCTGATCCAGAAGGCCGACGCCAGCCTCTATGATGCCAAGGCCAAGGGCCGCAACCGC
GTCTGCGCGCCGGGGATTGGCTGA

Upstream 100 bases:

>100_bases
CAAAATGGGCGCGCAACTGATCGACCGAGCACCTCTGGCTACGCCGTCCGGGCAACGGGCAAACCTGGATTTCCGGGAGG
CCTGCAAGGCGGCCGTTCGC

Downstream 100 bases:

>100_bases
GCCGCGGGAGCAGTCATTCCGTTTACGGAATACATCTTCAAATACAAGAACTGACTTCGAAGGCCGGCCCGAAATGGCCC
GCCCCTATTCTGTTCTTTGG

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MFQLSEKYKTAPFPNAYAVWFAYSTNADPALVAEIDELLLGQDAISAYDIELLFQAYLAEEQSVFATHDISQAIGDEIDE
VLSVLGTSLQQNTAFSETLSTLEQDLPQASSPEQFNTLVSGLIEENRRMNAMTQELNQGLARSQSLISTLSEQLDEVRTQ
SLRDPLTAIPNRRAFDKTLEEAMDHAARTHEPLCVAMADLDHFKALNDTFGHPAGDVVLQNFARLISGSANEPRLVARYG
GEEFAIIFPGSDLMAAYNRLVNIKHTLSKTVHEAEGSVGPLPAVTASFGVAKYQPGMTARELIQKADASLYDAKAKGRNR
VCAPGIG

Sequences:

>Translated_327_residues
MFQLSEKYKTAPFPNAYAVWFAYSTNADPALVAEIDELLLGQDAISAYDIELLFQAYLAEEQSVFATHDISQAIGDEIDE
VLSVLGTSLQQNTAFSETLSTLEQDLPQASSPEQFNTLVSGLIEENRRMNAMTQELNQGLARSQSLISTLSEQLDEVRTQ
SLRDPLTAIPNRRAFDKTLEEAMDHAARTHEPLCVAMADLDHFKALNDTFGHPAGDVVLQNFARLISGSANEPRLVARYG
GEEFAIIFPGSDLMAAYNRLVNIKHTLSKTVHEAEGSVGPLPAVTASFGVAKYQPGMTARELIQKADASLYDAKAKGRNR
VCAPGIG
>Mature_327_residues
MFQLSEKYKTAPFPNAYAVWFAYSTNADPALVAEIDELLLGQDAISAYDIELLFQAYLAEEQSVFATHDISQAIGDEIDE
VLSVLGTSLQQNTAFSETLSTLEQDLPQASSPEQFNTLVSGLIEENRRMNAMTQELNQGLARSQSLISTLSEQLDEVRTQ
SLRDPLTAIPNRRAFDKTLEEAMDHAARTHEPLCVAMADLDHFKALNDTFGHPAGDVVLQNFARLISGSANEPRLVARYG
GEEFAIIFPGSDLMAAYNRLVNIKHTLSKTVHEAEGSVGPLPAVTASFGVAKYQPGMTARELIQKADASLYDAKAKGRNR
VCAPGIG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=36, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI145693134, Length=177, Percent_Identity=34.4632768361582, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=31.4606741573034, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=36.875, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787816, Length=202, Percent_Identity=32.1782178217822, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87082007, Length=184, Percent_Identity=37.5, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788381, Length=159, Percent_Identity=32.7044025157233, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787056, Length=203, Percent_Identity=30.0492610837438, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787802, Length=188, Percent_Identity=31.3829787234043, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787541, Length=165, Percent_Identity=29.6969696969697, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=206, Percent_Identity=28.6407766990291, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=29.6296296296296, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 35697; Mature: 35697

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQLSEKYKTAPFPNAYAVWFAYSTNADPALVAEIDELLLGQDAISAYDIELLFQAYLAE
CCCCCCHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
EQSVFATHDISQAIGDEIDEVLSVLGTSLQQNTAFSETLSTLEQDLPQASSPEQFNTLVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
GLIEENRRMNAMTQELNQGLARSQSLISTLSEQLDEVRTQSLRDPLTAIPNRRAFDKTLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHH
EAMDHAARTHEPLCVAMADLDHFKALNDTFGHPAGDVVLQNFARLISGSANEPRLVARYG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEC
GEEFAIIFPGSDLMAAYNRLVNIKHTLSKTVHEAEGSVGPLPAVTASFGVAKYQPGMTAR
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHCCCCCHHH
ELIQKADASLYDAKAKGRNRVCAPGIG
HHHHHHCCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MFQLSEKYKTAPFPNAYAVWFAYSTNADPALVAEIDELLLGQDAISAYDIELLFQAYLAE
CCCCCCHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
EQSVFATHDISQAIGDEIDEVLSVLGTSLQQNTAFSETLSTLEQDLPQASSPEQFNTLVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
GLIEENRRMNAMTQELNQGLARSQSLISTLSEQLDEVRTQSLRDPLTAIPNRRAFDKTLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHH
EAMDHAARTHEPLCVAMADLDHFKALNDTFGHPAGDVVLQNFARLISGSANEPRLVARYG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEC
GEEFAIIFPGSDLMAAYNRLVNIKHTLSKTVHEAEGSVGPLPAVTASFGVAKYQPGMTAR
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHCCCCCHHH
ELIQKADASLYDAKAKGRNRVCAPGIG
HHHHHHCCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]