| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is pgk [H]
Identifier: 114799328
GI number: 114799328
Start: 3356687
End: 3357883
Strand: Direct
Name: pgk [H]
Synonym: HNE_3180
Alternate gene names: 114799328
Gene position: 3356687-3357883 (Clockwise)
Preceding gene: 114798520
Following gene: 114797979
Centisome position: 90.6
GC content: 63.24
Gene sequence:
>1197_bases ATGCCCTCGTTCAAACGCATCCCCGATGCAGGAAACCTCACCGGCAAGGTCGCGCTCGTCCGCGTTGACTTCAATGTGCC GATGGAAAACGGTCTGGTGACGGATGATACGCGCCTGCGCGCCGCCGTCGATACCGTCCAGTCGCTGCGCACGGCCGGCG CCAAGGTCGCCCTGCTGGCCCACTTTGGCCGCCCCAAGGGCGAGCGCGTCGCCGAGATGAGCCTCGCCCCGATTGCCGGC GCCTTTGCCAAAGTGCTCGGCGCAAATGTCAGCTTCGTTGCCGACTGCAAGGGCGATCATGTGAAATCGGCCATTGCGGA CCTTCTGCCCGCCGGCGTGATCCTTCTGGAAAACACGCGCTTCTACAAAGGCGAGGAAAAAGGCGACATGGAGCTGGCAA AGGAAATCGCCGCTCTGGGCGACCTCTATGTCAACGACGCCTTCTCCGCCGCCCACCGCCGCCATGTCTCGACCGCTGTT CTGGCGGATCTTCTGCCCGCCTATGCCGGCGTGACGATGGAAGCCGAACTCGATGCGCTCGACAAGGCGCTGGGCGCGCC GGAGCGTCCGGTCATGGCCATCGTCGGCGGGGCAAAGGTCTCCTCCAAGATCGACCTTCTGAAAAACCTCGTCTCCAAGG TCGACATGCTCGCGATTGGCGGGGGCATGGCCAACACGTTTCTCGCCGCAGACGGCGTGAATGTCGGCAAGTCGCTCTGC GAGCATGATCTTGCCCCGACCGTCCGGGAAATCCAGGCGGCGGCCAAGGCGGCGGGCTGCGAAATCCTTCTGCCGAAGGA CGTTGTCGTGGCGAAGGAATTCAAAGCCAATGCCGAAAACCGCACCTGCGGGCTGAATGAAATCGGCGCCGACGAAATGG TGCTCGACGCGGGCGCGGCGACCATAACCTACCTCTCCGAAGCGCTTGGCCGCGCCAAGACCGTGATCTGGAACGGCCCT CTCGGCGCCTTCGAGATGACGCCTTTTGACACCGCAACGGTGAAAGTCGCCGAAACAGCCGCCAAACTCGCCAAGTCCGG CGCGCTGGTTGCCGTGGCAGGCGGAGGCGATACGGTGGCCGCGCTTAACCATGCCGGCGTCGCCCAGGATTTCACCTTCA TCTCCACCGCAGGCGGAGCTTTCCTGGAATGGATGGAAGGCAAGGAACTGCCAGGCGTTGAAGCCTTGCTGAAATAG
Upstream 100 bases:
>100_bases CGCCGCTCGCTCCTGCGCGATGGCGGGGGCCCCAGCGGCGGCATTTCATCAGACCTCACGCGCCCTCCGCATTCGCGCCG GGGGACACCGGAGAATGACT
Downstream 100 bases:
>100_bases AGCGGCCCACGCGGCGCAGATTTTGCATTGAGCCGCCACAAAGCGGACAAAAATCCGAGCCAGTAGCCAACACACGAACG AACGTACCGGGACACAAAAC
Product: phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MPSFKRIPDAGNLTGKVALVRVDFNVPMENGLVTDDTRLRAAVDTVQSLRTAGAKVALLAHFGRPKGERVAEMSLAPIAG AFAKVLGANVSFVADCKGDHVKSAIADLLPAGVILLENTRFYKGEEKGDMELAKEIAALGDLYVNDAFSAAHRRHVSTAV LADLLPAYAGVTMEAELDALDKALGAPERPVMAIVGGAKVSSKIDLLKNLVSKVDMLAIGGGMANTFLAADGVNVGKSLC EHDLAPTVREIQAAAKAAGCEILLPKDVVVAKEFKANAENRTCGLNEIGADEMVLDAGAATITYLSEALGRAKTVIWNGP LGAFEMTPFDTATVKVAETAAKLAKSGALVAVAGGGDTVAALNHAGVAQDFTFISTAGGAFLEWMEGKELPGVEALLK
Sequences:
>Translated_398_residues MPSFKRIPDAGNLTGKVALVRVDFNVPMENGLVTDDTRLRAAVDTVQSLRTAGAKVALLAHFGRPKGERVAEMSLAPIAG AFAKVLGANVSFVADCKGDHVKSAIADLLPAGVILLENTRFYKGEEKGDMELAKEIAALGDLYVNDAFSAAHRRHVSTAV LADLLPAYAGVTMEAELDALDKALGAPERPVMAIVGGAKVSSKIDLLKNLVSKVDMLAIGGGMANTFLAADGVNVGKSLC EHDLAPTVREIQAAAKAAGCEILLPKDVVVAKEFKANAENRTCGLNEIGADEMVLDAGAATITYLSEALGRAKTVIWNGP LGAFEMTPFDTATVKVAETAAKLAKSGALVAVAGGGDTVAALNHAGVAQDFTFISTAGGAFLEWMEGKELPGVEALLK >Mature_397_residues PSFKRIPDAGNLTGKVALVRVDFNVPMENGLVTDDTRLRAAVDTVQSLRTAGAKVALLAHFGRPKGERVAEMSLAPIAGA FAKVLGANVSFVADCKGDHVKSAIADLLPAGVILLENTRFYKGEEKGDMELAKEIAALGDLYVNDAFSAAHRRHVSTAVL ADLLPAYAGVTMEAELDALDKALGAPERPVMAIVGGAKVSSKIDLLKNLVSKVDMLAIGGGMANTFLAADGVNVGKSLCE HDLAPTVREIQAAAKAAGCEILLPKDVVVAKEFKANAENRTCGLNEIGADEMVLDAGAATITYLSEALGRAKTVIWNGPL GAFEMTPFDTATVKVAETAAKLAKSGALVAVAGGGDTVAALNHAGVAQDFTFISTAGGAFLEWMEGKELPGVEALLK
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family [H]
Homologues:
Organism=Homo sapiens, GI4505763, Length=407, Percent_Identity=40.2948402948403, Blast_Score=263, Evalue=2e-70, Organism=Homo sapiens, GI31543397, Length=407, Percent_Identity=40.04914004914, Blast_Score=262, Evalue=4e-70, Organism=Escherichia coli, GI1789294, Length=389, Percent_Identity=44.987146529563, Blast_Score=283, Evalue=1e-77, Organism=Caenorhabditis elegans, GI17508823, Length=415, Percent_Identity=42.6506024096386, Blast_Score=292, Evalue=2e-79, Organism=Saccharomyces cerevisiae, GI6319857, Length=402, Percent_Identity=39.5522388059701, Blast_Score=262, Evalue=9e-71, Organism=Drosophila melanogaster, GI17136394, Length=404, Percent_Identity=38.6138613861386, Blast_Score=253, Evalue=2e-67, Organism=Drosophila melanogaster, GI24581203, Length=408, Percent_Identity=37.7450980392157, Blast_Score=239, Evalue=3e-63,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 [H]
Pfam domain/function: PF00162 PGK [H]
EC number: =2.7.2.3 [H]
Molecular weight: Translated: 41265; Mature: 41134
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSFKRIPDAGNLTGKVALVRVDFNVPMENGLVTDDTRLRAAVDTVQSLRTAGAKVALLA CCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCCEEEEE HFGRPKGERVAEMSLAPIAGAFAKVLGANVSFVADCKGDHVKSAIADLLPAGVILLENTR CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCE FYKGEEKGDMELAKEIAALGDLYVNDAFSAAHRRHVSTAVLADLLPAYAGVTMEAELDAL EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHH DKALGAPERPVMAIVGGAKVSSKIDLLKNLVSKVDMLAIGGGMANTFLAADGVNVGKSLC HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEECCCHHHHEEECCCCHHHHHHH EHDLAPTVREIQAAAKAAGCEILLPKDVVVAKEFKANAENRTCGLNEIGADEMVLDAGAA HHCCCHHHHHHHHHHHHCCCEEECCCCEEEHHHHHCCCCCCCCCCCCCCCCCEEEECCHH TITYLSEALGRAKTVIWNGPLGAFEMTPFDTATVKVAETAAKLAKSGALVAVAGGGDTVA HHHHHHHHHCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEE ALNHAGVAQDFTFISTAGGAFLEWMEGKELPGVEALLK HHHCCCCHHCCCEEECCCCHHHHHHCCCCCCCHHHHCC >Mature Secondary Structure PSFKRIPDAGNLTGKVALVRVDFNVPMENGLVTDDTRLRAAVDTVQSLRTAGAKVALLA CCCCCCCCCCCCCEEEEEEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCCEEEEE HFGRPKGERVAEMSLAPIAGAFAKVLGANVSFVADCKGDHVKSAIADLLPAGVILLENTR CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCE FYKGEEKGDMELAKEIAALGDLYVNDAFSAAHRRHVSTAVLADLLPAYAGVTMEAELDAL EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHH DKALGAPERPVMAIVGGAKVSSKIDLLKNLVSKVDMLAIGGGMANTFLAADGVNVGKSLC HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEECCCHHHHEEECCCCHHHHHHH EHDLAPTVREIQAAAKAAGCEILLPKDVVVAKEFKANAENRTCGLNEIGADEMVLDAGAA HHCCCHHHHHHHHHHHHCCCEEECCCCEEEHHHHHCCCCCCCCCCCCCCCCCEEEECCHH TITYLSEALGRAKTVIWNGPLGAFEMTPFDTATVKVAETAAKLAKSGALVAVAGGGDTVA HHHHHHHHHCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEE ALNHAGVAQDFTFISTAGGAFLEWMEGKELPGVEALLK HHHCCCCHHCCCEEECCCCHHHHHHCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2832389; 3680173 [H]