| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is rhlG [H]
Identifier: 114799303
GI number: 114799303
Start: 207039
End: 207809
Strand: Reverse
Name: rhlG [H]
Synonym: HNE_0217
Alternate gene names: 114799303
Gene position: 207809-207039 (Counterclockwise)
Preceding gene: 114799501
Following gene: 114799824
Centisome position: 5.61
GC content: 64.07
Gene sequence:
>771_bases ATGGACCTGGGTCTCAAGGGAAAGAACGCCATCATCCTCGGCGGCACACGCGGTATCGGGCGCGCGATCGCCGACACGCT CGCGAAAGAAGGTACAAATGTCGCCGTCTGCGCGCGCAATACCGATCAGGTTGCCGCCGCCGTGGCAGACCTCAAAGCAC TCGGCGTAAATGCCACCGGCGCATCCGTGGATGTCACCGATGGCCCGGCCCTCAAGAAATGGATCGCCGATGCAGCCGGC ACGCTGGGCGGCCTGGACATCCTAATCTCCAATGCCGGCGCCATGGCGCAGGGCAATGACGTCGCCGCCTGGGAGCAGAA CTTCCAGCTCGACGTGCTCGCCGCCGTCAACGCATTTGAGGCAGCCCAGCCCCTCCTCGGCAAGGCCGCCGCGACCAACG GCGACGCCGCTTTCGTCATTATTTCATCGATCTCCGCAGCGCAGGCAGACCGGGGCGACTCCTATGGCCCCATAAAGGCA GCGCTGATCCATATGGCCAAGGGTCTCGCCCGTCAGCACGCCAAAGCCGGCATTCGCGTCAACGTCGTCTCTCCTGGCAT GGTGTTCTTCGAGGGCGGCGTCTGGCACACGGTCAAGACGAATGCGCCGGACTTCTTTGAGCAGGCCAATGCGCGCAATC CCACGGGCCGCTGCGCCACACCGCAGGAGATTGCCAATGCCGCCGTCTTCCTCGCCAGCCCGGCCTCAAGCTACACGACC GGGGCAAATCTCATCGTTGACGGCGCTGTCTCCAACCGCGTGAACTTCTGA
Upstream 100 bases:
>100_bases ATTCCCGCTCAAGCGTGCGGGGGCAAATCGCCTTGCGGGCCATTGGCCCCACCACCTTTCCCTCTTAGGATCGCACCAGA TAAACCGGGAAGGAAACATC
Downstream 100 bases:
>100_bases CCGGAAGAAAAGGCGCCTGAACCGCGCGCCCCGGAACTCGTTTCCAGCACGCGCGGCTCAGGCGGCCATTCAGTTGCCCG CCAAATGCGACCGGCGTTTG
Product: NAD-dependent epimerase/dehydratase family protein
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MDLGLKGKNAIILGGTRGIGRAIADTLAKEGTNVAVCARNTDQVAAAVADLKALGVNATGASVDVTDGPALKKWIADAAG TLGGLDILISNAGAMAQGNDVAAWEQNFQLDVLAAVNAFEAAQPLLGKAAATNGDAAFVIISSISAAQADRGDSYGPIKA ALIHMAKGLARQHAKAGIRVNVVSPGMVFFEGGVWHTVKTNAPDFFEQANARNPTGRCATPQEIANAAVFLASPASSYTT GANLIVDGAVSNRVNF
Sequences:
>Translated_256_residues MDLGLKGKNAIILGGTRGIGRAIADTLAKEGTNVAVCARNTDQVAAAVADLKALGVNATGASVDVTDGPALKKWIADAAG TLGGLDILISNAGAMAQGNDVAAWEQNFQLDVLAAVNAFEAAQPLLGKAAATNGDAAFVIISSISAAQADRGDSYGPIKA ALIHMAKGLARQHAKAGIRVNVVSPGMVFFEGGVWHTVKTNAPDFFEQANARNPTGRCATPQEIANAAVFLASPASSYTT GANLIVDGAVSNRVNF >Mature_256_residues MDLGLKGKNAIILGGTRGIGRAIADTLAKEGTNVAVCARNTDQVAAAVADLKALGVNATGASVDVTDGPALKKWIADAAG TLGGLDILISNAGAMAQGNDVAAWEQNFQLDVLAAVNAFEAAQPLLGKAAATNGDAAFVIISSISAAQADRGDSYGPIKA ALIHMAKGLARQHAKAGIRVNVVSPGMVFFEGGVWHTVKTNAPDFFEQANARNPTGRCATPQEIANAAVFLASPASSYTT GANLIVDGAVSNRVNF
Specific function: Required for the synthesis of the beta-hydroxy acid moiety of rhamnolipids [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=259, Percent_Identity=32.046332046332, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=31.3008130081301, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=26.171875, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI5031737, Length=259, Percent_Identity=27.4131274131274, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI126723750, Length=262, Percent_Identity=28.6259541984733, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=29.2490118577075, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=32.7956989247312, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI7705925, Length=259, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI59889578, Length=196, Percent_Identity=29.0816326530612, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI66933014, Length=207, Percent_Identity=30.9178743961353, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1787335, Length=253, Percent_Identity=33.201581027668, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=32.6771653543307, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=33.2, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787905, Length=258, Percent_Identity=31.7829457364341, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI87082160, Length=260, Percent_Identity=30.3846153846154, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=28.2868525896414, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI2367365, Length=251, Percent_Identity=31.0756972111554, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=30.2325581395349, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=26.7716535433071, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=29.6, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI2367175, Length=240, Percent_Identity=29.1666666666667, Blast_Score=66, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=34.2307692307692, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=32.3076923076923, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=33.8403041825095, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=30.7116104868914, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17538480, Length=274, Percent_Identity=31.3868613138686, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=29.1828793774319, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=28.6259541984733, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17561402, Length=264, Percent_Identity=30.3030303030303, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=31.5589353612167, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=29.0566037735849, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=30.188679245283, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=30.5343511450382, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI193204405, Length=269, Percent_Identity=29.7397769516729, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=30.2681992337165, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=31.2977099236641, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=28.6792452830189, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562904, Length=273, Percent_Identity=31.5018315018315, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=31.7829457364341, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=32.0610687022901, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=28.968253968254, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=30.7984790874525, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17536651, Length=264, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=27.5092936802974, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=28.7937743190661, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=29.4820717131474, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=31.1023622047244, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=30.46875, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=26.3565891472868, Blast_Score=70, Evalue=3e-13, Organism=Drosophila melanogaster, GI21355319, Length=259, Percent_Identity=30.5019305019305, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI23397609, Length=260, Percent_Identity=32.6923076923077, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI24639444, Length=259, Percent_Identity=31.6602316602317, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=28.2868525896414, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=27.5590551181102, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=27.2373540856031, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=28.968253968254, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 25983; Mature: 25983
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLGLKGKNAIILGGTRGIGRAIADTLAKEGTNVAVCARNTDQVAAAVADLKALGVNATG CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC ASVDVTDGPALKKWIADAAGTLGGLDILISNAGAMAQGNDVAAWEQNFQLDVLAAVNAFE CEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEHHCCCCEEEHHHHHHHH AAQPLLGKAAATNGDAAFVIISSISAAQADRGDSYGPIKAALIHMAKGLARQHAKAGIRV HHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEE NVVSPGMVFFEGGVWHTVKTNAPDFFEQANARNPTGRCATPQEIANAAVFLASPASSYTT EEECCCEEEEECCEEEEEECCCCHHHHHCCCCCCCCCCCCHHHHHCEEEEEECCCCCCCC GANLIVDGAVSNRVNF CCEEEEECCCCCCCCC >Mature Secondary Structure MDLGLKGKNAIILGGTRGIGRAIADTLAKEGTNVAVCARNTDQVAAAVADLKALGVNATG CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC ASVDVTDGPALKKWIADAAGTLGGLDILISNAGAMAQGNDVAAWEQNFQLDVLAAVNAFE CEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEHHCCCCEEEHHHHHHHH AAQPLLGKAAATNGDAAFVIISSISAAQADRGDSYGPIKAALIHMAKGLARQHAKAGIRV HHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEE NVVSPGMVFFEGGVWHTVKTNAPDFFEQANARNPTGRCATPQEIANAAVFLASPASSYTT EEECCCEEEEECCEEEEEECCCCHHHHHCCCCCCCCCCCCHHHHHCEEEEEECCCCCCCC GANLIVDGAVSNRVNF CCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9721281; 10984043 [H]