Click here to switch to the map view.

The map label for this gene is psd [H]

Identifier: 114799288

GI number: 114799288

Start: 1264876

End: 1265823

Strand: Direct

Name: psd [H]

Synonym: HNE_1243

Alternate gene names: 114799288

Gene position: 1264876-1265823 (Clockwise)

Preceding gene: 114797357

Following gene: 114797276

Centisome position: 34.14

GC content: 68.25

Gene sequence:

>948_bases
ATGAGCGAAGAAGCAGACCGCCAGTCGCTGCCCTGGATGATTGCGGGATTTGACTGGGAAGCCGTGGCCGCCGCAGCGGG
CGCCTTTCTGGCCGCGCTGCTGCTGGGCTGGATCTGGGCGCCGCTGTTCTGGATCGGCTTTGCCGCCATGGCGATTGCGC
TGGCCGCCGGGCGCTGGTCGCGGCGCACACCGCCGGATCTGGCTTACGGCGTCGTGGCGCCATGCGACGGGGTGGTGGTT
TCGGTCGGCTATGGCGACGCGCCGGCCGCGTTGCGCCTGAAGGGCGAGAGCCTCGTGCGTGTGCGTATCGCGTCGTCGCC
AGTCTCTACCAACAAGCTTTACGCGCCGATGGCCGGCGGGGTGGAGATCGTGTCGCTGCAACAGGGCGAGGCGCGCCAGC
CTTTCGCCCTGAAACCGGATGAAGACGGGCTGACGCGGGCATTCGTCACCTTCGAGAGCCAGGGCGAGCAGGCGGGTGTC
GTGCTGACCACGGGCGGGCTTGGTCCCCGCATTGAACTGGCCGTCGATCATGGCGACGTGGTGCGCCTGGGGCGCAGCTT
TGGCACGCGGCGGCTCGGCGGCTGGTGTGATGTCTATCTGCCCGCTGATATTCGCACGCATGTCTGGGCCGGGCAGACGC
TGACAGGCGGGGAGACGGTGATCGCGCATTTCCGTTCCTCCGTTGAGGAAGAGTTCGAGGAAGCCGATGTGGCATATTCC
GGCGCTGCCGCCCGCCCGGTGCGGGACGCGGCGGCCGCAGCAGCCGGGGCGGCCGCCGTGTCGGGCGTTGCAGAGAGCGC
CGCGCTGGAAGAGGTGGGTGACGATCCCGTTGATGAGCTGATCGACGATGATTATCCCGAGCCCGATGAAGTCTCCGCGC
CGGAAGACCCGGCAGCCATATTCGCCCGGCTGCGGGAAGCGGCCCGAAAGCATGGCGAAGGCGACTGA

Upstream 100 bases:

>100_bases
CAAAAGGCGGCAAATATGCTGATATGTGGCATCGTCAGGCGCATCGCGCCGAACCGGCTGAACTTCTCAGCTGAAACAGA
CCTTTAGAGGAGGCAAGCCG

Downstream 100 bases:

>100_bases
CCTGATGAGACCCCTCCGGAGACGGAGGGGTTTTTGTTTGGGGATGCGGGGTCGGCCGGAACGCGCGGGAGCGCGGCCGG
TGGTGTGTTTCGTTGAGAGG

Product: phosphatidylserine decarboxylase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSEEADRQSLPWMIAGFDWEAVAAAAGAFLAALLLGWIWAPLFWIGFAAMAIALAAGRWSRRTPPDLAYGVVAPCDGVVV
SVGYGDAPAALRLKGESLVRVRIASSPVSTNKLYAPMAGGVEIVSLQQGEARQPFALKPDEDGLTRAFVTFESQGEQAGV
VLTTGGLGPRIELAVDHGDVVRLGRSFGTRRLGGWCDVYLPADIRTHVWAGQTLTGGETVIAHFRSSVEEEFEEADVAYS
GAAARPVRDAAAAAAGAAAVSGVAESAALEEVGDDPVDELIDDDYPEPDEVSAPEDPAAIFARLREAARKHGEGD

Sequences:

>Translated_315_residues
MSEEADRQSLPWMIAGFDWEAVAAAAGAFLAALLLGWIWAPLFWIGFAAMAIALAAGRWSRRTPPDLAYGVVAPCDGVVV
SVGYGDAPAALRLKGESLVRVRIASSPVSTNKLYAPMAGGVEIVSLQQGEARQPFALKPDEDGLTRAFVTFESQGEQAGV
VLTTGGLGPRIELAVDHGDVVRLGRSFGTRRLGGWCDVYLPADIRTHVWAGQTLTGGETVIAHFRSSVEEEFEEADVAYS
GAAARPVRDAAAAAAGAAAVSGVAESAALEEVGDDPVDELIDDDYPEPDEVSAPEDPAAIFARLREAARKHGEGD
>Mature_314_residues
SEEADRQSLPWMIAGFDWEAVAAAAGAFLAALLLGWIWAPLFWIGFAAMAIALAAGRWSRRTPPDLAYGVVAPCDGVVVS
VGYGDAPAALRLKGESLVRVRIASSPVSTNKLYAPMAGGVEIVSLQQGEARQPFALKPDEDGLTRAFVTFESQGEQAGVV
LTTGGLGPRIELAVDHGDVVRLGRSFGTRRLGGWCDVYLPADIRTHVWAGQTLTGGETVIAHFRSSVEEEFEEADVAYSG
AAARPVRDAAAAAAGAAAVSGVAESAALEEVGDDPVDELIDDDYPEPDEVSAPEDPAAIFARLREAARKHGEGD

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 33101; Mature: 32970

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEADRQSLPWMIAGFDWEAVAAAAGAFLAALLLGWIWAPLFWIGFAAMAIALAAGRWS
CCCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RRTPPDLAYGVVAPCDGVVVSVGYGDAPAALRLKGESLVRVRIASSPVSTNKLYAPMAGG
CCCCCCHHCCEECCCCCEEEEECCCCCCCEEEECCCCEEEEEEECCCCCCCEEECCCCCC
VEIVSLQQGEARQPFALKPDEDGLTRAFVTFESQGEQAGVVLTTGGLGPRIELAVDHGDV
EEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCEEEEEECCCHH
VRLGRSFGTRRLGGWCDVYLPADIRTHVWAGQTLTGGETVIAHFRSSVEEEFEEADVAYS
HHHHHHCCCCCCCCEEEEEECCCCCEEEECCCEECCCHHHHHHHHHHHHHHHHHHCHHCC
GAAARPVRDAAAAAAGAAAVSGVAESAALEEVGDDPVDELIDDDYPEPDEVSAPEDPAAI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHH
FARLREAARKHGEGD
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
SEEADRQSLPWMIAGFDWEAVAAAAGAFLAALLLGWIWAPLFWIGFAAMAIALAAGRWS
CCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RRTPPDLAYGVVAPCDGVVVSVGYGDAPAALRLKGESLVRVRIASSPVSTNKLYAPMAGG
CCCCCCHHCCEECCCCCEEEEECCCCCCCEEEECCCCEEEEEEECCCCCCCEEECCCCCC
VEIVSLQQGEARQPFALKPDEDGLTRAFVTFESQGEQAGVVLTTGGLGPRIELAVDHGDV
EEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCEEEEEECCCHH
VRLGRSFGTRRLGGWCDVYLPADIRTHVWAGQTLTGGETVIAHFRSSVEEEFEEADVAYS
HHHHHHCCCCCCCCEEEEEECCCCCEEEECCCEECCCHHHHHHHHHHHHHHHHHHCHHCC
GAAARPVRDAAAAAAGAAAVSGVAESAALEEVGDDPVDELIDDDYPEPDEVSAPEDPAAI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHH
FARLREAARKHGEGD
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA