Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

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The map label for this gene is fyuA [H]

Identifier: 114799262

GI number: 114799262

Start: 2269081

End: 2271357

Strand: Reverse

Name: fyuA [H]

Synonym: HNE_2180

Alternate gene names: 114799262

Gene position: 2271357-2269081 (Counterclockwise)

Preceding gene: 114797722

Following gene: 114800451

Centisome position: 61.3

GC content: 56.13

Gene sequence:

>2277_bases
ATGAAATTTTTGCACGCTAGAAGTGTTTCTTGTCTCGCGCTTATCAGCGCGATTGGCGTAACGGGCATTGCGCCTGCGGC
CTTTGCGCAGGCGGACTCCGAGAAGAAAATGGAGACTGTGACGGTCACAGCCACCCGGCGCGAACAGACACTTCAGGAAG
TTCCCGTCGCTGTTTCGGTCGTTTCTGGCGACCTACTGGAATCGACCGGCACGGGGTCGATGGATGCTCTTTCGGACCTC
ACGCCAAGCCTGACACTTCTTAAAGGCAACAACGAATCAAACAGCTCCGTCAGCATCCGGGGCCTGGGCACGTCGGTCTT
TTCTCAAGCTGTCGAACCCTCAGTCTCAATCGTGATTGATGATGTCTTGATGGCACGGTCGGGCCAAGGGTTTCAGGACC
TGATAGATGTACAGCGCGTTGAGGTGCTGCGTGGGCCGCAAAGTACATTGTTTGGCAAGAATGCCTCGGCAGGTGTCGTG
TCGGTCACGACCAGAGGCCCCTCCGAAACGCTGACCGGTGGCTTCGATGTGGAACTTGCAGAGGAAGACAGCTCCTATGC
TGTGCGCGGGACTCTGTCGGGACCCATTTCCGATACGGTCGGCTTTCGCGTCAGCGCTTTTACCAACGACTATGCCGGGC
ATCTCCGGAACGTTGCCACGGGTGAGCGCGCCAACGGCAGCGATAGCTGGGGTCTGCGGGGCAAATTGCAGTTCGACATT
ACCGATCGTCTGGCGCTGACGCTCATCGGCGACTACCGGGAATCTGACTCCGAACCTGTGGTCACGGTGCGCACGGCCAA
CAATCCAGCCTACTTGGCGCAATTGGCTCCCGTGGTGCCGGGGCAGGAAAATACCGCCTTGCGCGCGAATGCCGACAGCT
ATGCAACGACCGAGCAGGCGGGCCTTTCAGCCAAGGCGGAATATACTTTCGACAACGACTTCACGCTGACCTCGATTTCG
GCTTGGCGGTCTTGGGATTTTGCCAACAACCTGGACGTTGATGGCCTGTCCAATGAAAACCCGCTCCCAGGTGGCCTCCT
GACTTTCGACCTCAACAGCGGCACGATCAATCTGAACCAATACACTCAGGAAGTTCGCCTCGCATCGCCCGATCTTGGAA
ATTTCGATTTCCTTATCGGGGCCTTTGCCTACCATCTCGATCTGGAGCGCCACTTTGAGCGGCGTTTGGAACTTATGACG
CCTGGCGGCATGATCGCCCAGTCCGGGCAGTTCGATGGAAGCGTCGAGAACAACTACTATGCGGCGTTTGCCAGCGCGAA
CTACTATTTCAATGATCAGACCTCCCTGTTTGGGGGCGCGCGTCTTCTGACAGAAGAGGTCAACTGGGTGGCATTCCGTG
ATCCGACGAATGTGCTTGTTCCTGGCGATCTGCCGCTCACAGGTGTGCAAGGAATTCTCGCTGATTTCACGGGGGGCGTT
AGCGACACAGCAGTCGTCGGAAACATCGGTATACGGCATTCTTTCAATGACTATGCCAATGCCTATGCGAGCTATTCTCG
CGGTTACAAGGGTAAGTCGACGACGATTGATTTTGCGTCAATTCAAGGCGAAGAGCCAGTTGATGCAGAAGAATCCGACG
CCTATGAAATTGGCCTGAAGCTTACCTCTCCGGGTGGGAGATGGGCCGCAAACTTTGCTGCTTTCCATACCCAGTTCAAC
AATTTCCAATCTCAGGCTCAGCTGCCGGGTGAGATCGCCACTGTACTGATCAACGCTGGTGACGTCTCGACCCAGGGCGT
GGAGGCCGAGTTGATGGCACGGCCGACCGATCTCACCGATATCAGCCTGGGTCTGGCTTACATTGATGCCACGATTGATA
CATTCCCCTCCGGACCGTGCTATGCGGGCCAGACGGTGGCTGATGGTTGCGTCAATGGTGTCCAAGACCTTGCAGGTAAG
GATCTGCCCTATTCGCCCGATTTGCGCCTGACTTTCTTTGGTCGCCAGACGGTACCTCTGGCGGCGATGCCGTTTGACGG
ATTTATTCAGGCCAGCGGTTACTGGCAGGATGATATTCTGTTTTCGTTGGATCAGTCCCCGATTGCCACGGGTGAAGCAC
GGACCATGGTCAATGCGGCGATCGGCGTTGAAGACAAGAATGGGCGCTACAATGCCTCAATCTTTGTCAACAACGTGTTC
GACGAGCACTATGTGACATCGATCTCGCAACTCGGATTGTTCGGCGGCTTCACCTTCCAGTATGTGCCGCGCGATCATCA
GCGTTACGTCGGTATCCGGTTCGGTGCCAACTTCTAG

Upstream 100 bases:

>100_bases
TTCTAAAAAACGAAAAATTGCTTGACTTCCTCCGTGTCCCGAAAGAGGAACGTCTTCAGCAGGTGTTGCAGGAAACAGGC
TTCACCATGGGAGGAAAATC

Downstream 100 bases:

>100_bases
GGCCGATCTGGTGCGTTTCCTCCCAGCGTCCGGCGAGACTGGGTGCCGCCTCTAAGGCGGCACCCTTTTTTTGCATTCGA
TGGCTGTGAGTGGAGGGGTG

Product: outer membrane receptor (OMR) family protein

Products: NA

Alternate protein names: IPR65; IRPC [H]

Number of amino acids: Translated: 758; Mature: 758

Protein sequence:

>758_residues
MKFLHARSVSCLALISAIGVTGIAPAAFAQADSEKKMETVTVTATRREQTLQEVPVAVSVVSGDLLESTGTGSMDALSDL
TPSLTLLKGNNESNSSVSIRGLGTSVFSQAVEPSVSIVIDDVLMARSGQGFQDLIDVQRVEVLRGPQSTLFGKNASAGVV
SVTTRGPSETLTGGFDVELAEEDSSYAVRGTLSGPISDTVGFRVSAFTNDYAGHLRNVATGERANGSDSWGLRGKLQFDI
TDRLALTLIGDYRESDSEPVVTVRTANNPAYLAQLAPVVPGQENTALRANADSYATTEQAGLSAKAEYTFDNDFTLTSIS
AWRSWDFANNLDVDGLSNENPLPGGLLTFDLNSGTINLNQYTQEVRLASPDLGNFDFLIGAFAYHLDLERHFERRLELMT
PGGMIAQSGQFDGSVENNYYAAFASANYYFNDQTSLFGGARLLTEEVNWVAFRDPTNVLVPGDLPLTGVQGILADFTGGV
SDTAVVGNIGIRHSFNDYANAYASYSRGYKGKSTTIDFASIQGEEPVDAEESDAYEIGLKLTSPGGRWAANFAAFHTQFN
NFQSQAQLPGEIATVLINAGDVSTQGVEAELMARPTDLTDISLGLAYIDATIDTFPSGPCYAGQTVADGCVNGVQDLAGK
DLPYSPDLRLTFFGRQTVPLAAMPFDGFIQASGYWQDDILFSLDQSPIATGEARTMVNAAIGVEDKNGRYNASIFVNNVF
DEHYVTSISQLGLFGGFTFQYVPRDHQRYVGIRFGANF

Sequences:

>Translated_758_residues
MKFLHARSVSCLALISAIGVTGIAPAAFAQADSEKKMETVTVTATRREQTLQEVPVAVSVVSGDLLESTGTGSMDALSDL
TPSLTLLKGNNESNSSVSIRGLGTSVFSQAVEPSVSIVIDDVLMARSGQGFQDLIDVQRVEVLRGPQSTLFGKNASAGVV
SVTTRGPSETLTGGFDVELAEEDSSYAVRGTLSGPISDTVGFRVSAFTNDYAGHLRNVATGERANGSDSWGLRGKLQFDI
TDRLALTLIGDYRESDSEPVVTVRTANNPAYLAQLAPVVPGQENTALRANADSYATTEQAGLSAKAEYTFDNDFTLTSIS
AWRSWDFANNLDVDGLSNENPLPGGLLTFDLNSGTINLNQYTQEVRLASPDLGNFDFLIGAFAYHLDLERHFERRLELMT
PGGMIAQSGQFDGSVENNYYAAFASANYYFNDQTSLFGGARLLTEEVNWVAFRDPTNVLVPGDLPLTGVQGILADFTGGV
SDTAVVGNIGIRHSFNDYANAYASYSRGYKGKSTTIDFASIQGEEPVDAEESDAYEIGLKLTSPGGRWAANFAAFHTQFN
NFQSQAQLPGEIATVLINAGDVSTQGVEAELMARPTDLTDISLGLAYIDATIDTFPSGPCYAGQTVADGCVNGVQDLAGK
DLPYSPDLRLTFFGRQTVPLAAMPFDGFIQASGYWQDDILFSLDQSPIATGEARTMVNAAIGVEDKNGRYNASIFVNNVF
DEHYVTSISQLGLFGGFTFQYVPRDHQRYVGIRFGANF
>Mature_758_residues
MKFLHARSVSCLALISAIGVTGIAPAAFAQADSEKKMETVTVTATRREQTLQEVPVAVSVVSGDLLESTGTGSMDALSDL
TPSLTLLKGNNESNSSVSIRGLGTSVFSQAVEPSVSIVIDDVLMARSGQGFQDLIDVQRVEVLRGPQSTLFGKNASAGVV
SVTTRGPSETLTGGFDVELAEEDSSYAVRGTLSGPISDTVGFRVSAFTNDYAGHLRNVATGERANGSDSWGLRGKLQFDI
TDRLALTLIGDYRESDSEPVVTVRTANNPAYLAQLAPVVPGQENTALRANADSYATTEQAGLSAKAEYTFDNDFTLTSIS
AWRSWDFANNLDVDGLSNENPLPGGLLTFDLNSGTINLNQYTQEVRLASPDLGNFDFLIGAFAYHLDLERHFERRLELMT
PGGMIAQSGQFDGSVENNYYAAFASANYYFNDQTSLFGGARLLTEEVNWVAFRDPTNVLVPGDLPLTGVQGILADFTGGV
SDTAVVGNIGIRHSFNDYANAYASYSRGYKGKSTTIDFASIQGEEPVDAEESDAYEIGLKLTSPGGRWAANFAAFHTQFN
NFQSQAQLPGEIATVLINAGDVSTQGVEAELMARPTDLTDISLGLAYIDATIDTFPSGPCYAGQTVADGCVNGVQDLAGK
DLPYSPDLRLTFFGRQTVPLAAMPFDGFIQASGYWQDDILFSLDQSPIATGEARTMVNAAIGVEDKNGRYNASIFVNNVF
DEHYVTSISQLGLFGGFTFQYVPRDHQRYVGIRFGANF

Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 81297; Mature: 81297

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLHARSVSCLALISAIGVTGIAPAAFAQADSEKKMETVTVTATRREQTLQEVPVAVSV
CCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEEEEECHHHHHHHHCCEEEEE
VSGDLLESTGTGSMDALSDLTPSLTLLKGNNESNSSVSIRGLGTSVFSQAVEPSVSIVID
ECCHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCCEEEEEECCHHHHHHHCCCCEEEEEE
DVLMARSGQGFQDLIDVQRVEVLRGPQSTLFGKNASAGVVSVTTRGPSETLTGGFDVELA
HHHHHCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEC
EEDSSYAVRGTLSGPISDTVGFRVSAFTNDYAGHLRNVATGERANGSDSWGLRGKLQFDI
CCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE
TDRLALTLIGDYRESDSEPVVTVRTANNPAYLAQLAPVVPGQENTALRANADSYATTEQA
CCCEEEEEEECCCCCCCCCEEEEEECCCCEEEHEECCCCCCCCCCEEEECCCCCCCHHHC
GLSAKAEYTFDNDFTLTSISAWRSWDFANNLDVDGLSNENPLPGGLLTFDLNSGTINLNQ
CCCEEEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHH
YTQEVRLASPDLGNFDFLIGAFAYHLDLERHFERRLELMTPGGMIAQSGQFDGSVENNYY
HHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCCCCCCEE
AAFASANYYFNDQTSLFGGARLLTEEVNWVAFRDPTNVLVPGDLPLTGVQGILADFTGGV
EEEEECEEEECCCCCCCCCHHEEEECCCEEEEECCCCEEECCCCCCHHHHHHHHHHCCCC
SDTAVVGNIGIRHSFNDYANAYASYSRGYKGKSTTIDFASIQGEEPVDAEESDAYEIGLK
CCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEE
LTSPGGRWAANFAAFHTQFNNFQSQAQLPGEIATVLINAGDVSTQGVEAELMARPTDLTD
EECCCCCEEHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCC
ISLGLAYIDATIDTFPSGPCYAGQTVADGCVNGVQDLAGKDLPYSPDLRLTFFGRQTVPL
CEEEEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCE
AAMPFDGFIQASGYWQDDILFSLDQSPIATGEARTMVNAAIGVEDKNGRYNASIFVNNVF
EECCCCCEEEECCCCCCCEEEEECCCCCCCCCHHEEEEEEEEEECCCCEEEEEEEEECCC
DEHYVTSISQLGLFGGFTFQYVPRDHQRYVGIRFGANF
CHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCC
>Mature Secondary Structure
MKFLHARSVSCLALISAIGVTGIAPAAFAQADSEKKMETVTVTATRREQTLQEVPVAVSV
CCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEEEEECHHHHHHHHCCEEEEE
VSGDLLESTGTGSMDALSDLTPSLTLLKGNNESNSSVSIRGLGTSVFSQAVEPSVSIVID
ECCHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCCEEEEEECCHHHHHHHCCCCEEEEEE
DVLMARSGQGFQDLIDVQRVEVLRGPQSTLFGKNASAGVVSVTTRGPSETLTGGFDVELA
HHHHHCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEC
EEDSSYAVRGTLSGPISDTVGFRVSAFTNDYAGHLRNVATGERANGSDSWGLRGKLQFDI
CCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE
TDRLALTLIGDYRESDSEPVVTVRTANNPAYLAQLAPVVPGQENTALRANADSYATTEQA
CCCEEEEEEECCCCCCCCCEEEEEECCCCEEEHEECCCCCCCCCCEEEECCCCCCCHHHC
GLSAKAEYTFDNDFTLTSISAWRSWDFANNLDVDGLSNENPLPGGLLTFDLNSGTINLNQ
CCCEEEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHH
YTQEVRLASPDLGNFDFLIGAFAYHLDLERHFERRLELMTPGGMIAQSGQFDGSVENNYY
HHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCCCCCCEE
AAFASANYYFNDQTSLFGGARLLTEEVNWVAFRDPTNVLVPGDLPLTGVQGILADFTGGV
EEEEECEEEECCCCCCCCCHHEEEECCCEEEEECCCCEEECCCCCCHHHHHHHHHHCCCC
SDTAVVGNIGIRHSFNDYANAYASYSRGYKGKSTTIDFASIQGEEPVDAEESDAYEIGLK
CCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEE
LTSPGGRWAANFAAFHTQFNNFQSQAQLPGEIATVLINAGDVSTQGVEAELMARPTDLTD
EECCCCCEEHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCC
ISLGLAYIDATIDTFPSGPCYAGQTVADGCVNGVQDLAGKDLPYSPDLRLTFFGRQTVPL
CEEEEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCE
AAMPFDGFIQASGYWQDDILFSLDQSPIATGEARTMVNAAIGVEDKNGRYNASIFVNNVF
EECCCCCEEEECCCCCCCEEEEECCCCCCCCCHHEEEEEEEEEECCCCEEEEEEEEECCC
DEHYVTSISQLGLFGGFTFQYVPRDHQRYVGIRFGANF
CHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA