Click here to switch to the map view.

The map label for this gene is recO

Identifier: 114799258

GI number: 114799258

Start: 899440

End: 900171

Strand: Direct

Name: recO

Synonym: HNE_0879

Alternate gene names: 114799258

Gene position: 899440-900171 (Clockwise)

Preceding gene: 114799800

Following gene: 114797721

Centisome position: 24.28

GC content: 67.62

Gene sequence:

>732_bases
ATGAACTGGTCCGATGACGGAATAGTACTGGGAGGGCGCCGCTTCGGGGAAGGCGGCCTGATCCTCGATGTGCTGACCCG
TGAGAAGGGCCGCCGTTCCGGCCTCGTCTATGGCGGCGCCTCCCGCCGCAAGCGGGCCCAGTTTGAAGCGGGCAATACCA
TCGCGCTCAGCTGGACCGGCCGCCTTGATGACCAGCTCGGCCGCTTCGATGTTGCCGAAGCCAGGAAAGACCGCGCCTCC
CGCCTGCTGGATGATCCCGCCGCGCTCGCCGCGCTCTCGGCCATCACATCGCTCCTGCGCGGCGGCCTCAATGAAGGCGA
TGCTGCCGGCTCCAGCCTCTACGAGGCCACCACCCTGCTGCTCGATCAGCTGACCGAGCCGAACGTCTGGCCCGCGCTTT
ATGTGCGCTGGGAACTCGGCCTCCTCTCGGCGCTGGGCTTCGGGCTGGATCTCGACGAATGCGCTGTCAGCGGCGCCAAT
GACGGCCTCACCCATGTGTCCCCGCGCACGGGCCGCGCGGTGCGCGGTTCCGAAGCCGAGCCCTATGTCGACCGGCTGTT
CGCCCTGCCAAGCTTCCTGATCGATCCGCGCGCAGACGTTCTGCCAGGTGACATTGCCGCGGGCCTGCGTCTGACGGGGT
ATTTCATCGAAGGTCGCCTCTTTGGCTCCGTCCATCGCGGCCTGCCGCCGGAGCGGGAACGTCTGCTGAAGCGGATCACC
CCGCCTGCCTGA

Upstream 100 bases:

>100_bases
CCCGGTACATCTGTTCCTGTTCGTGAAGGTGGATGAGCGCTGGCAGGAAAAGCGGGAGCGCTATCAGGGCATCGGCCTGG
AGTTTGATGTCTGAGGGTGC

Downstream 100 bases:

>100_bases
ACGGCCTCACCGGCAGATCATCCCCTGGCCCATATCCATGTGAAAATGGTCCGCATGCGCCGCGTTGTATTCGGGGCCCA
GTGTCACCGAGAACAGCCCG

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNWSDDGIVLGGRRFGEGGLILDVLTREKGRRSGLVYGGASRRKRAQFEAGNTIALSWTGRLDDQLGRFDVAEARKDRAS
RLLDDPAALAALSAITSLLRGGLNEGDAAGSSLYEATTLLLDQLTEPNVWPALYVRWELGLLSALGFGLDLDECAVSGAN
DGLTHVSPRTGRAVRGSEAEPYVDRLFALPSFLIDPRADVLPGDIAAGLRLTGYFIEGRLFGSVHRGLPPERERLLKRIT
PPA

Sequences:

>Translated_243_residues
MNWSDDGIVLGGRRFGEGGLILDVLTREKGRRSGLVYGGASRRKRAQFEAGNTIALSWTGRLDDQLGRFDVAEARKDRAS
RLLDDPAALAALSAITSLLRGGLNEGDAAGSSLYEATTLLLDQLTEPNVWPALYVRWELGLLSALGFGLDLDECAVSGAN
DGLTHVSPRTGRAVRGSEAEPYVDRLFALPSFLIDPRADVLPGDIAAGLRLTGYFIEGRLFGSVHRGLPPERERLLKRIT
PPA
>Mature_243_residues
MNWSDDGIVLGGRRFGEGGLILDVLTREKGRRSGLVYGGASRRKRAQFEAGNTIALSWTGRLDDQLGRFDVAEARKDRAS
RLLDDPAALAALSAITSLLRGGLNEGDAAGSSLYEATTLLLDQLTEPNVWPALYVRWELGLLSALGFGLDLDECAVSGAN
DGLTHVSPRTGRAVRGSEAEPYVDRLFALPSFLIDPRADVLPGDIAAGLRLTGYFIEGRLFGSVHRGLPPERERLLKRIT
PPA

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_HYPNA (Q0C3T7)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_759606.1
- ProteinModelPortal:   Q0C3T7
- STRING:   Q0C3T7
- GeneID:   4289688
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_0879
- NMPDR:   fig|228405.5.peg.859
- TIGR:   HNE_0879
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   CLSK2531968
- BioCyc:   HNEP81032:HNE_0879-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 26211; Mature: 26211

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWSDDGIVLGGRRFGEGGLILDVLTREKGRRSGLVYGGASRRKRAQFEAGNTIALSWTG
CCCCCCCEEECCCEECCCCEEEEEECCCCCCCCCEEECCCCHHHHHHCCCCCEEEEEECC
RLDDQLGRFDVAEARKDRASRLLDDPAALAALSAITSLLRGGLNEGDAAGSSLYEATTLL
CCHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LDQLTEPNVWPALYVRWELGLLSALGFGLDLDECAVSGANDGLTHVSPRTGRAVRGSEAE
HHHCCCCCCCCEEEEEHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PYVDRLFALPSFLIDPRADVLPGDIAAGLRLTGYFIEGRLFGSVHRGLPPERERLLKRIT
HHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEEEEEEECEEEHHHHHCCCHHHHHHHHHCC
PPA
CCC
>Mature Secondary Structure
MNWSDDGIVLGGRRFGEGGLILDVLTREKGRRSGLVYGGASRRKRAQFEAGNTIALSWTG
CCCCCCCEEECCCEECCCCEEEEEECCCCCCCCCEEECCCCHHHHHHCCCCCEEEEEECC
RLDDQLGRFDVAEARKDRASRLLDDPAALAALSAITSLLRGGLNEGDAAGSSLYEATTLL
CCHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LDQLTEPNVWPALYVRWELGLLSALGFGLDLDECAVSGANDGLTHVSPRTGRAVRGSEAE
HHHCCCCCCCCEEEEEHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PYVDRLFALPSFLIDPRADVLPGDIAAGLRLTGYFIEGRLFGSVHRGLPPERERLLKRIT
HHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEEEEEEECEEEHHHHHCCCHHHHHHHHHCC
PPA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA