Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

Click here to switch to the map view.

The map label for this gene is 114799155

Identifier: 114799155

GI number: 114799155

Start: 1155373

End: 1156155

Strand: Direct

Name: 114799155

Synonym: HNE_1143

Alternate gene names: NA

Gene position: 1155373-1156155 (Clockwise)

Preceding gene: 114800171

Following gene: 114798623

Centisome position: 31.18

GC content: 63.86

Gene sequence:

>783_bases
ATGGGACTGGCCGGTTTTGCTGTGGCAGAGCCGGCCAGCCTTACGCCTGCGCGGCCGACGATCGTGTCACTGGATTACTG
CGCGGACCAGTTCGTGCTGGCGCTGGCAGACCGGGAGCAGATACTCGCGCTCTCCAAGGATTCCGAACGCGCTTTCAGCC
ATTTGAGAGAGAAGGCGGCGGGCATTCCCAAGGTGCGCGCGGCGGCAGAAGATGTCGTCGCGCTGGCGCCGGATGTTGTG
GTGCGCAGCTGGGGCGGGGATGTGCGCGCGCTTTCCCTTTATCAGCGTTTCGGTATTGAGACCGTGCAGATCGGCTATGC
CGAAGACGTAGACGGAACGGCAGGTCTGTTGCGCGATGTGGCCGCTGCAATCGGGCAATCTTCGCGCGCCGAAGACATTC
TGGCCGTGACGCCTGCGCCGGCCCGGCCTACCGGGCGCAAGGCGCTTTACGTTACCCCCGGCGGGGTCAGCGCGGGCAAG
GATACGATGATTGCCTCGATCATGACCCATGCCGGACTTGAGAACGCAAATACGGGCACGGGCTGGACAAACCTGCCGCT
GGAAAGTCTGGTTCTGGAGCCGCCCGCGCTGATGCTGGCGGCGTTTTTCGGTTTTGATGATGATGCGACCGACAGCTGGT
CTGTGTCCCGCCATCCGGTGATGCAGCGGCTCATGGCGCAGGCGCAGGTGATCGATATGGACGAGTCGCGGGTTTCCTGC
GGGGCATGGTTTGTGGCCGATGAAGCGGCCGATATTGCCGGTGCGCTGGAGCCGGCGCGATGA

Upstream 100 bases:

>100_bases
ATGAGAAGCCAACCGACATCTATGGCTATAATGGTCCGGGTGCTGGTGTATTCGTGGGACTGAAACTGAAGTGAGACTGA
GGCTTTCAGCCTTTTTCCTG

Downstream 100 bases:

>100_bases
GCCGCCTGACGCTCATCCTGGCGCTTGTGGCGGCGCTTCTGTTTGCGATTTCGGCGCTGGTGGGCACGGCGCCGCTGGCT
TTGGGCGATACATTCGCGGC

Product: iron compound ABC transporter periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MGLAGFAVAEPASLTPARPTIVSLDYCADQFVLALADREQILALSKDSERAFSHLREKAAGIPKVRAAAEDVVALAPDVV
VRSWGGDVRALSLYQRFGIETVQIGYAEDVDGTAGLLRDVAAAIGQSSRAEDILAVTPAPARPTGRKALYVTPGGVSAGK
DTMIASIMTHAGLENANTGTGWTNLPLESLVLEPPALMLAAFFGFDDDATDSWSVSRHPVMQRLMAQAQVIDMDESRVSC
GAWFVADEAADIAGALEPAR

Sequences:

>Translated_260_residues
MGLAGFAVAEPASLTPARPTIVSLDYCADQFVLALADREQILALSKDSERAFSHLREKAAGIPKVRAAAEDVVALAPDVV
VRSWGGDVRALSLYQRFGIETVQIGYAEDVDGTAGLLRDVAAAIGQSSRAEDILAVTPAPARPTGRKALYVTPGGVSAGK
DTMIASIMTHAGLENANTGTGWTNLPLESLVLEPPALMLAAFFGFDDDATDSWSVSRHPVMQRLMAQAQVIDMDESRVSC
GAWFVADEAADIAGALEPAR
>Mature_259_residues
GLAGFAVAEPASLTPARPTIVSLDYCADQFVLALADREQILALSKDSERAFSHLREKAAGIPKVRAAAEDVVALAPDVVV
RSWGGDVRALSLYQRFGIETVQIGYAEDVDGTAGLLRDVAAAIGQSSRAEDILAVTPAPARPTGRKALYVTPGGVSAGKD
TMIASIMTHAGLENANTGTGWTNLPLESLVLEPPALMLAAFFGFDDDATDSWSVSRHPVMQRLMAQAQVIDMDESRVSCG
AWFVADEAADIAGALEPAR

Specific function: Unknown

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27381; Mature: 27250

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLAGFAVAEPASLTPARPTIVSLDYCADQFVLALADREQILALSKDSERAFSHLREKAA
CCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCHHHEEEECCCHHHHHHHHHHHHC
GIPKVRAAAEDVVALAPDVVVRSWGGDVRALSLYQRFGIETVQIGYAEDVDGTAGLLRDV
CCCHHHHHHHHHHHHCCHHHEECCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHH
AAAIGQSSRAEDILAVTPAPARPTGRKALYVTPGGVSAGKDTMIASIMTHAGLENANTGT
HHHHCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC
GWTNLPLESLVLEPPALMLAAFFGFDDDATDSWSVSRHPVMQRLMAQAQVIDMDESRVSC
CCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
GAWFVADEAADIAGALEPAR
CEEEEECCHHHHHCCCCCCC
>Mature Secondary Structure 
GLAGFAVAEPASLTPARPTIVSLDYCADQFVLALADREQILALSKDSERAFSHLREKAA
CCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCHHHEEEECCCHHHHHHHHHHHHC
GIPKVRAAAEDVVALAPDVVVRSWGGDVRALSLYQRFGIETVQIGYAEDVDGTAGLLRDV
CCCHHHHHHHHHHHHCCHHHEECCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHH
AAAIGQSSRAEDILAVTPAPARPTGRKALYVTPGGVSAGKDTMIASIMTHAGLENANTGT
HHHHCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC
GWTNLPLESLVLEPPALMLAAFFGFDDDATDSWSVSRHPVMQRLMAQAQVIDMDESRVSC
CCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
GAWFVADEAADIAGALEPAR
CEEEEECCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA