| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is ycbL [C]
Identifier: 114799081
GI number: 114799081
Start: 1900977
End: 1902041
Strand: Reverse
Name: ycbL [C]
Synonym: HNE_1843
Alternate gene names: 114799081
Gene position: 1902041-1900977 (Counterclockwise)
Preceding gene: 114799825
Following gene: 114798259
Centisome position: 51.34
GC content: 61.13
Gene sequence:
>1065_bases ATGGATGGATTTCTCTCAGAACCGACCCAGTACAAGGGTCTGACTTTCCCGCATGGAACGCTGGCGCCCGAACCGGGCGA AGCAATCACGCTGGCGCCGGGCGTGGAATGGACGCGGATGCCGCTGCCGTTTTCGCTCAAGCACATCAATGTGTGGATAT TGGATGATGGCGATGGCTGGACCATCGTGGACACCGGCATGCCGCTGCCCGATACCAAAGACGCCTGGCGCAAATTGCTG GATGAACGGGTAACGCCCGAGAAGCCGCTGAAGCGGGTCATTATCACGCATATGCACCCCGATCATATCGGGTGCGCTGG CTGGCTCTGTTACAAGTATGACGCCGAGCTGTGGATCAGCCGTCTGGAGTATACGACCTGCCGGATGCTGGTGGCCGATA CCGGCCGGGACGCGCCCAAGGCGGGGATCGATTTCTATGTGCGGGCCGGGTGGCCCCAGAAAGCCATCGACAATTACGTG TCGCGCTTTGGCGGGTTCGGGCGCGGCGTGAGCCAGATGCCGGACGCGTTCACGCGGCTGGAAGATGGCGACCGGGTGCA GCTGGCGGGCCAGGAATGGCGCGTGATTACCGGCAACGGGCATTCGCCTGAGCATGTGTGCCTCTTCAGCGAGACGCTGA ATGTGGCGATCACCGGTGACCAGCTGTTGCCGCGGATTTCGTCGAATGTTTCGGTGCATCCGACCGAGCCGATGTCCAAT CCGCTGGATGACTGGATCAAGAGCTGTGAAAAACTGCTGCGGGAGCTGCCCGAGGATTGTTTCATCCTGCCGGCCCACAA TGAGCCTTTCACAGGCGCTCATATCCGCCTGCGCAATCTGATTGCCGGGCATGAGACGTCGCTGACGCGTCTGCGGCAGA AGCTCGAAAAGGGACCTTTGAAGGTTCCGGAGACCTTCATTTCGCTGTTCGGGCGGGCCATCAAGGATGACGAGATGGGC AGCGCCACGGGAGAGGCACTGGCACACCTCAACTACCTGATCCATCGGGGCGAGGTGAAAAGCCGGCCCGACACGGACGG CGCACTGCTATACAGCCTCGCCTGA
Upstream 100 bases:
>100_bases AAGCGGACGAAGTTGCCTCCCCGGGAACGCAAGCCGATCAAGTGATCTTTCCCCCGCGTGACGGCTCGACGGGGGAGCCT GCCGCCGTATCGTGAGTCCC
Downstream 100 bases:
>100_bases AGCGCTGTTTCGCCTCACATTGAAATGCAGTCTTGCGGGTCATTTCGCCTTCGCAAGCCTGTTGCTTTTCGTCTAAGACA TGCCGGATTGCCTGTGATTG
Product: metallo-beta-lactamase family protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Beta-Lactamase-Like; Beta-Lactamase-Like Protein; Beta Lactamase; Metallo-Beta-Lactamase Superfamily Protein; Metallo-Beta-Lactamase Superfamily; Zn-Dependent Hydrolase; Metallo-Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase; Beta-Lactamase Class B; Zn-Dependent Hydrolases; Zn-Dependent Hydrolase Glyoxylase; Metallo-Dependent Enzymatic Protein; Metallo-Beta-Lactamase Family Hydrolase; Hydrolase; Zinc Metallohydrolase; Metal Dependent Hydrolase; Metallo-Hydrolase/Oxidoreductase Superfamily Protein; Zn-Dependent Hydrolase Including Glyoxylase-Like Protein; Zinc Metallohydrolase Glyoxalase II Family
Number of amino acids: Translated: 354; Mature: 354
Protein sequence:
>354_residues MDGFLSEPTQYKGLTFPHGTLAPEPGEAITLAPGVEWTRMPLPFSLKHINVWILDDGDGWTIVDTGMPLPDTKDAWRKLL DERVTPEKPLKRVIITHMHPDHIGCAGWLCYKYDAELWISRLEYTTCRMLVADTGRDAPKAGIDFYVRAGWPQKAIDNYV SRFGGFGRGVSQMPDAFTRLEDGDRVQLAGQEWRVITGNGHSPEHVCLFSETLNVAITGDQLLPRISSNVSVHPTEPMSN PLDDWIKSCEKLLRELPEDCFILPAHNEPFTGAHIRLRNLIAGHETSLTRLRQKLEKGPLKVPETFISLFGRAIKDDEMG SATGEALAHLNYLIHRGEVKSRPDTDGALLYSLA
Sequences:
>Translated_354_residues MDGFLSEPTQYKGLTFPHGTLAPEPGEAITLAPGVEWTRMPLPFSLKHINVWILDDGDGWTIVDTGMPLPDTKDAWRKLL DERVTPEKPLKRVIITHMHPDHIGCAGWLCYKYDAELWISRLEYTTCRMLVADTGRDAPKAGIDFYVRAGWPQKAIDNYV SRFGGFGRGVSQMPDAFTRLEDGDRVQLAGQEWRVITGNGHSPEHVCLFSETLNVAITGDQLLPRISSNVSVHPTEPMSN PLDDWIKSCEKLLRELPEDCFILPAHNEPFTGAHIRLRNLIAGHETSLTRLRQKLEKGPLKVPETFISLFGRAIKDDEMG SATGEALAHLNYLIHRGEVKSRPDTDGALLYSLA >Mature_354_residues MDGFLSEPTQYKGLTFPHGTLAPEPGEAITLAPGVEWTRMPLPFSLKHINVWILDDGDGWTIVDTGMPLPDTKDAWRKLL DERVTPEKPLKRVIITHMHPDHIGCAGWLCYKYDAELWISRLEYTTCRMLVADTGRDAPKAGIDFYVRAGWPQKAIDNYV SRFGGFGRGVSQMPDAFTRLEDGDRVQLAGQEWRVITGNGHSPEHVCLFSETLNVAITGDQLLPRISSNVSVHPTEPMSN PLDDWIKSCEKLLRELPEDCFILPAHNEPFTGAHIRLRNLIAGHETSLTRLRQKLEKGPLKVPETFISLFGRAIKDDEMG SATGEALAHLNYLIHRGEVKSRPDTDGALLYSLA
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39615; Mature: 39615
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGFLSEPTQYKGLTFPHGTLAPEPGEAITLAPGVEWTRMPLPFSLKHINVWILDDGDGW CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCCEEEEEEEEEEEECCCCE TIVDTGMPLPDTKDAWRKLLDERVTPEKPLKRVIITHMHPDHIGCAGWLCYKYDAELWIS EEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHEEEEEEECHHHHHH RLEYTTCRMLVADTGRDAPKAGIDFYVRAGWPQKAIDNYVSRFGGFGRGVSQMPDAFTRL HHHHHHHEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHC EDGDRVQLAGQEWRVITGNGHSPEHVCLFSETLNVAITGDQLLPRISSNVSVHPTEPMSN CCCCEEEECCCCEEEEECCCCCCCEEEEEECCEEEEEECHHHHHHHCCCCEECCCCCCCC PLDDWIKSCEKLLRELPEDCFILPAHNEPFTGAHIRLRNLIAGHETSLTRLRQKLEKGPL CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC KVPETFISLFGRAIKDDEMGSATGEALAHLNYLIHRGEVKSRPDTDGALLYSLA CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEC >Mature Secondary Structure MDGFLSEPTQYKGLTFPHGTLAPEPGEAITLAPGVEWTRMPLPFSLKHINVWILDDGDGW CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCCEEEEEEEEEEEECCCCE TIVDTGMPLPDTKDAWRKLLDERVTPEKPLKRVIITHMHPDHIGCAGWLCYKYDAELWIS EEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHEEEEEEECHHHHHH RLEYTTCRMLVADTGRDAPKAGIDFYVRAGWPQKAIDNYVSRFGGFGRGVSQMPDAFTRL HHHHHHHEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHC EDGDRVQLAGQEWRVITGNGHSPEHVCLFSETLNVAITGDQLLPRISSNVSVHPTEPMSN CCCCEEEECCCCEEEEECCCCCCCEEEEEECCEEEEEECHHHHHHHCCCCEECCCCCCCC PLDDWIKSCEKLLRELPEDCFILPAHNEPFTGAHIRLRNLIAGHETSLTRLRQKLEKGPL CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC KVPETFISLFGRAIKDDEMGSATGEALAHLNYLIHRGEVKSRPDTDGALLYSLA CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA