Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

Click here to switch to the map view.

The map label for this gene is 114799080

Identifier: 114799080

GI number: 114799080

Start: 47276

End: 48466

Strand: Direct

Name: 114799080

Synonym: HNE_0057

Alternate gene names: NA

Gene position: 47276-48466 (Clockwise)

Preceding gene: 114800090

Following gene: 114800136

Centisome position: 1.28

GC content: 59.61

Gene sequence:

>1191_bases
ATGTCGTATGCTGCCGGGCGGCTCATTCATGATGCCGACAGCCATCTGATGGAAATGACCGATTGCCTCGATCCCTATTT
CGAGGCGCGCCTGCTGGAACGCTATCACGCGCTTCCCGTCTACCAGGCAAAGCATTCTCACGCTCACTGGATGAACAAGG
AACGCGCCCGGCATGAGGACGCCGCCTATCGCGCCGCTGCCGGAGACGCGATCCTTCTCAAGAAAAACTATGAGGCGCTC
GGATCATTCCGGCGGGAAGATCGCCCGGCCGTGATGGACCGGCTGGGCTTTGCCAGCCAGCTTGTGTTCACCACCTTCTG
TCTCGGAAATTTCGGGCTCGACCAGTCGGGCGACATGGAACTTTGTTACGCGGCCGCCGATGCCCATAACCGTATGATGA
CCGACTTCTGCTCGGTTGACCGGCGTCTGCTGCCCGTTGCTTATGTGCCGCTGGAAGATTTTCAGAGGGCGAAGCAAACC
GCCAGGCTGGCTATCCAGCTGGGCGCCAAGGCCATCATGGTGCCCTCACTTTGCCCGCAAAAACATGCGCCCAGCCATAT
CGGTCTCGATCCGGTCTGGCGCGCGGCGGAAGAGGCGGGCTTGCCGATCCTCCTGCATGTCGGGGGGGAGGAAAAACTCA
ACCCGGTCTACAAGGAAAACGGCCTGCCGCCGGTGCCCGATTTCCATGGCGGTGACGATAATTTCACCTCCGTTTCCTAT
ATGCCGATCCCAAACGCAGCGATGCAGACGCTCTCCACACTGATTTTCGATGGCGTGTTTGACCGTTTCCCGAATTTGAA
ATGGGGGGCTATCGAGCTTGGCGCGTCCTGGGTTCCCGGGTGGATGCGGTCCATGGATTCGGCTGCCCATGCGTTCGGGC
GCAATGAAGAACGATTGCAGAAATTATCGGCCAAGCCTTCCGAAATTGTCCGCCGCCAGTTCCGCGCGGCGCCCTATCCG
CATGAAGATGCCGGCTGGATTATTCGCAATTCGGGGGATGAGGTCTGCCTCTTCTCGTCAGACTATCCCCATGTCGAGGG
CGGCAGGAACCCGCTCAAGCGGTTCGATGAAACGCTCGCAGGCTGCACGCCAACGCAGGTGGAACGCTTCTATTCGGAGA
ATTTCATCGACCTTATGGGAGAAGGCCTGGCGAGAGACTTGCGGCGGCCGGGCCTGAAAGCCACGGGCTGA

Upstream 100 bases:

>100_bases
GGTTCTCAACGCGCTCTGAGCGCCGTAACGCGTCCGGATTTGGACAAGCCGGCCACCTTGTGACATCCTCCGCTCAAAAG
AAGAGCGGAGGAAACAAGCA

Downstream 100 bases:

>100_bases
TTTATATTCAACCAACTAGTTGACAATTGAGTTCCTGTCTCCATATTCAACCACATGGTTGAACAAGAATCTCCCCGTCT
CGACGCTATCTTCCATGCCT

Product: amidohydrolase family protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSYAAGRLIHDADSHLMEMTDCLDPYFEARLLERYHALPVYQAKHSHAHWMNKERARHEDAAYRAAAGDAILLKKNYEAL
GSFRREDRPAVMDRLGFASQLVFTTFCLGNFGLDQSGDMELCYAAADAHNRMMTDFCSVDRRLLPVAYVPLEDFQRAKQT
ARLAIQLGAKAIMVPSLCPQKHAPSHIGLDPVWRAAEEAGLPILLHVGGEEKLNPVYKENGLPPVPDFHGGDDNFTSVSY
MPIPNAAMQTLSTLIFDGVFDRFPNLKWGAIELGASWVPGWMRSMDSAAHAFGRNEERLQKLSAKPSEIVRRQFRAAPYP
HEDAGWIIRNSGDEVCLFSSDYPHVEGGRNPLKRFDETLAGCTPTQVERFYSENFIDLMGEGLARDLRRPGLKATG

Sequences:

>Translated_396_residues
MSYAAGRLIHDADSHLMEMTDCLDPYFEARLLERYHALPVYQAKHSHAHWMNKERARHEDAAYRAAAGDAILLKKNYEAL
GSFRREDRPAVMDRLGFASQLVFTTFCLGNFGLDQSGDMELCYAAADAHNRMMTDFCSVDRRLLPVAYVPLEDFQRAKQT
ARLAIQLGAKAIMVPSLCPQKHAPSHIGLDPVWRAAEEAGLPILLHVGGEEKLNPVYKENGLPPVPDFHGGDDNFTSVSY
MPIPNAAMQTLSTLIFDGVFDRFPNLKWGAIELGASWVPGWMRSMDSAAHAFGRNEERLQKLSAKPSEIVRRQFRAAPYP
HEDAGWIIRNSGDEVCLFSSDYPHVEGGRNPLKRFDETLAGCTPTQVERFYSENFIDLMGEGLARDLRRPGLKATG
>Mature_395_residues
SYAAGRLIHDADSHLMEMTDCLDPYFEARLLERYHALPVYQAKHSHAHWMNKERARHEDAAYRAAAGDAILLKKNYEALG
SFRREDRPAVMDRLGFASQLVFTTFCLGNFGLDQSGDMELCYAAADAHNRMMTDFCSVDRRLLPVAYVPLEDFQRAKQTA
RLAIQLGAKAIMVPSLCPQKHAPSHIGLDPVWRAAEEAGLPILLHVGGEEKLNPVYKENGLPPVPDFHGGDDNFTSVSYM
PIPNAAMQTLSTLIFDGVFDRFPNLKWGAIELGASWVPGWMRSMDSAAHAFGRNEERLQKLSAKPSEIVRRQFRAAPYPH
EDAGWIIRNSGDEVCLFSSDYPHVEGGRNPLKRFDETLAGCTPTQVERFYSENFIDLMGEGLARDLRRPGLKATG

Specific function: Unknown

COG id: COG2159

COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44369; Mature: 44238

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYAAGRLIHDADSHLMEMTDCLDPYFEARLLERYHALPVYQAKHSHAHWMNKERARHED
CCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHH
AAYRAAAGDAILLKKNYEALGSFRREDRPAVMDRLGFASQLVFTTFCLGNFGLDQSGDME
HHHHHCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
LCYAAADAHNRMMTDFCSVDRRLLPVAYVPLEDFQRAKQTARLAIQLGAKAIMVPSLCPQ
EEEEHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
KHAPSHIGLDPVWRAAEEAGLPILLHVGGEEKLNPVYKENGLPPVPDFHGGDDNFTSVSY
CCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHCCCHHHCCCCCCCCCCCCCCCCCCEEEE
MPIPNAAMQTLSTLIFDGVFDRFPNLKWGAIELGASWVPGWMRSMDSAAHAFGRNEERLQ
ECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCHHHHH
KLSAKPSEIVRRQFRAAPYPHEDAGWIIRNSGDEVCLFSSDYPHVEGGRNPLKRFDETLA
HHCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
GCTPTQVERFYSENFIDLMGEGLARDLRRPGLKATG
CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SYAAGRLIHDADSHLMEMTDCLDPYFEARLLERYHALPVYQAKHSHAHWMNKERARHED
CCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHH
AAYRAAAGDAILLKKNYEALGSFRREDRPAVMDRLGFASQLVFTTFCLGNFGLDQSGDME
HHHHHCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
LCYAAADAHNRMMTDFCSVDRRLLPVAYVPLEDFQRAKQTARLAIQLGAKAIMVPSLCPQ
EEEEHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
KHAPSHIGLDPVWRAAEEAGLPILLHVGGEEKLNPVYKENGLPPVPDFHGGDDNFTSVSY
CCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHCCCHHHCCCCCCCCCCCCCCCCCCEEEE
MPIPNAAMQTLSTLIFDGVFDRFPNLKWGAIELGASWVPGWMRSMDSAAHAFGRNEERLQ
ECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCHHHHH
KLSAKPSEIVRRQFRAAPYPHEDAGWIIRNSGDEVCLFSSDYPHVEGGRNPLKRFDETLA
HHCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
GCTPTQVERFYSENFIDLMGEGLARDLRRPGLKATG
CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA