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The map label for this gene is yfhH [C]

Identifier: 114798767

GI number: 114798767

Start: 2579610

End: 2580443

Strand: Reverse

Name: yfhH [C]

Synonym: HNE_2458

Alternate gene names: 114798767

Gene position: 2580443-2579610 (Counterclockwise)

Preceding gene: 114799229

Following gene: 114797781

Centisome position: 69.65

GC content: 55.88

Gene sequence:

>834_bases
GTGCTGAGCCGTATTCGGGTGCGCCAGGCATCCCTCGGTCCCAGCACGCGCTCAATTGCCGAATTCGTACTGGAAAACCC
TCGCCGGGTGGTTGGCATGTCGGTGACCGAATTGGCGTCGGAGACGGGGGCGAGTGATGGCAGCGTCGTCAATTTCTGTC
GGCAGTTGGGCTTGACGGGTTTCCAGCAGCTCAAGCTCAGCCTTGCGCAGGATACAGTACAGCCGGTGCAATTCATTCAG
GAGGATCTGCAGCGCGGCGACGATACAAATACAATTTGCCGGAAGATGTTCCATGCTGGCGTCCAGGCGTTACGCGATAC
GTTATCGGTGGTCGATGCAGATGCAATTGATCTTGCAGTTGAAACAATCCGCGCAGCAGATCGCATAGAGATATACGGAA
TAGGCTCGTCCGCACCGGTTGCAGAGGACGCTCAGTATCGCATGTTGCGGATTGGGATTGATGCTAGAGTCGTGGTCGAT
AGCCACATCCAGGCGATCAGCGCATCCCGCACCGGGCCGAATGTTGCCGTACTGACCATATCCCACTCCGGTGCAACTCA
CGAGACATTGTCGGCAACCCGGTTGGCGCATGAAGCGGGTGCAAAAACGATCGTCATTACGAATTTTGCCAACTCTCCAA
TCCAGGCCTATGCCGACATCAAACTCTACACGATGTCGCGCGAGACACGTTTTCGTACCGAAGCCATGACCAGCCGGATT
GCACAGCTGTGCGTGATAGATACGCTGATTGCCGCTCTCGCAATGGCTGACTACGACCGCGCCACGGAAACGCTTCGCGA
AACGTTTGACGTACTCTCGATCAAGCGTTTCTAA

Upstream 100 bases:

>100_bases
GGCGTCCAGCGCGCAAAGGACCGGATACAGAATGTCAAAAGTAGTGAAAGGGGCCAAACCTGCTCGCCCGTCCAGCAAGG
ATACTTCGGTCGTCAGCAAT

Downstream 100 bases:

>100_bases
GGGTTTCCAAGAGCGATTGGAAGAAGGCTGCCGGCGACGGCGTCACCAGTAATGCCGGCATGCCAAGCTTGCGCGCGCCA
TCAATATCCGTTGCGGGATT

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MLSRIRVRQASLGPSTRSIAEFVLENPRRVVGMSVTELASETGASDGSVVNFCRQLGLTGFQQLKLSLAQDTVQPVQFIQ
EDLQRGDDTNTICRKMFHAGVQALRDTLSVVDADAIDLAVETIRAADRIEIYGIGSSAPVAEDAQYRMLRIGIDARVVVD
SHIQAISASRTGPNVAVLTISHSGATHETLSATRLAHEAGAKTIVITNFANSPIQAYADIKLYTMSRETRFRTEAMTSRI
AQLCVIDTLIAALAMADYDRATETLRETFDVLSIKRF

Sequences:

>Translated_277_residues
MLSRIRVRQASLGPSTRSIAEFVLENPRRVVGMSVTELASETGASDGSVVNFCRQLGLTGFQQLKLSLAQDTVQPVQFIQ
EDLQRGDDTNTICRKMFHAGVQALRDTLSVVDADAIDLAVETIRAADRIEIYGIGSSAPVAEDAQYRMLRIGIDARVVVD
SHIQAISASRTGPNVAVLTISHSGATHETLSATRLAHEAGAKTIVITNFANSPIQAYADIKLYTMSRETRFRTEAMTSRI
AQLCVIDTLIAALAMADYDRATETLRETFDVLSIKRF
>Mature_277_residues
MLSRIRVRQASLGPSTRSIAEFVLENPRRVVGMSVTELASETGASDGSVVNFCRQLGLTGFQQLKLSLAQDTVQPVQFIQ
EDLQRGDDTNTICRKMFHAGVQALRDTLSVVDADAIDLAVETIRAADRIEIYGIGSSAPVAEDAQYRMLRIGIDARVVVD
SHIQAISASRTGPNVAVLTISHSGATHETLSATRLAHEAGAKTIVITNFANSPIQAYADIKLYTMSRETRFRTEAMTSRI
AQLCVIDTLIAALAMADYDRATETLRETFDVLSIKRF

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082130, Length=272, Percent_Identity=31.25, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87082369, Length=264, Percent_Identity=26.8939393939394, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1788159, Length=277, Percent_Identity=28.5198555956679, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788767, Length=259, Percent_Identity=28.1853281853282, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30233; Mature: 30233

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRIRVRQASLGPSTRSIAEFVLENPRRVVGMSVTELASETGASDGSVVNFCRQLGLTG
CCCCHHHHHHCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCCH
FQQLKLSLAQDTVQPVQFIQEDLQRGDDTNTICRKMFHAGVQALRDTLSVVDADAIDLAV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
ETIRAADRIEIYGIGSSAPVAEDAQYRMLRIGIDARVVVDSHIQAISASRTGPNVAVLTI
HHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEHHHHHHHHCCCCCCCEEEEEE
SHSGATHETLSATRLAHEAGAKTIVITNFANSPIQAYADIKLYTMSRETRFRTEAMTSRI
ECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHEEEEEEEEECCHHHHHHHHHHHHH
AQLCVIDTLIAALAMADYDRATETLRETFDVLSIKRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLSRIRVRQASLGPSTRSIAEFVLENPRRVVGMSVTELASETGASDGSVVNFCRQLGLTG
CCCCHHHHHHCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCCH
FQQLKLSLAQDTVQPVQFIQEDLQRGDDTNTICRKMFHAGVQALRDTLSVVDADAIDLAV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
ETIRAADRIEIYGIGSSAPVAEDAQYRMLRIGIDARVVVDSHIQAISASRTGPNVAVLTI
HHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEHHHHHHHHCCCCCCCEEEEEE
SHSGATHETLSATRLAHEAGAKTIVITNFANSPIQAYADIKLYTMSRETRFRTEAMTSRI
ECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHEEEEEEEEECCHHHHHHHHHHHHH
AQLCVIDTLIAALAMADYDRATETLRETFDVLSIKRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]