Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

Click here to switch to the map view.

The map label for this gene is 114797781

Identifier: 114797781

GI number: 114797781

Start: 2576003

End: 2578636

Strand: Reverse

Name: 114797781

Synonym: HNE_2456

Alternate gene names: NA

Gene position: 2578636-2576003 (Counterclockwise)

Preceding gene: 114798767

Following gene: 114799899

Centisome position: 69.6

GC content: 55.28

Gene sequence:

>2634_bases
GTGATATACGATCTGAGAAAGAAACTGTTGTGGAGTGTCGGGGCCGTATTGGTTTCGGCCAGTTTTGCTGCGCCTGTCAT
GGCGCAGACCGAGGCTGCAGAAGAAGATGAAGCCCGCCTCAGCACGGTGCTGGTCGAGGGCCGCCGCGTGGACGAAGCGA
CGCCCCTGGCGATTGATATGGTTCAGTTCGGCAATCAGGTTCAGTTGATTGATGCTGAAAAAATCGAAACCGGCGGGTTT
ACAAATTTCGGCGAGGCCGCAGCCGGTCTGATCCGCGGTGCCAACATCGGTTACTCGCCTGATGAAGGCGAATTCACGAT
CCGCATTGACGGCGGAACTGACCGGGACACGCTGTTGCTGGTCGACGGCGTTCCCTACTTTGACCGGTCCAGCCCGTCAG
AAGATCTTTGGCCAGCCACGGCCATTGATCCGCGCATGATTGATAGTGTCGAAGTCTATCGCGGCGGCCAATCGTTGTAC
TTTGGATCAAACGGTGGGTTGGGTGTCGTCAGTGTAAAGACAAAAGAACCGGATGGCACCAAAAAGGGTCAAATCGGTGT
CTATGGCGGTTCGTTCAAGACGCGCGAGATTTATGGCAACGTGTCTATGCCGATTGATGCGGAAGGAAAGCATAGCTTCC
TCGTCTATGGCCGCTCCTATCATTCCGATGCACATGAACTCTTCGATGTTTCTGCTTTCGGGGACAACGTCCTCGCGCTT
GGCGGATTTCAGCCATATCCCTATGACTTCAACAGCCTGGGCGCTAAATACCTCTGGCAAATTGATGCAACTTCGGAGCT
CCGCCTCGGAGCGAGCTTCTCGACCATCGATTTCCATGACTCCTTCCCAAACTCGACAGTATTTGCGCAGAACTTCACGG
AGTTCCCGATCTATACCGCAAACTACGAGAAGTCGTTCTCGGACAATTTCCGGATCGAAGTTGACTCCCACTGGCAGAAG
CCTCAGCTGAAAAATCACGAAGTTTTGGCTCGCGTCTGCCGCACGCCCCGTCTTCAGGACTTGCCGGAAAATGTGCGTGC
GCTTGCTTCCGAACAGGGGATTACCGATTTCGCTTCCGCAGCCCAATTCGAGGCATTTGCGGCGACTGTGCCAAATCTTT
CGGCTGGATGTGTCACAAATCCTTATGGCACGACGGGCGGAGCGGCGACCAGCGCGCAGAATGGTTGGATGGTGAACCAA
GACCCCAACAGCCCCTATTTCGGGCAAGCGTATGGAACAGTTCAAAATCCGTTCCCGATCGGCGCGCCTATCGGATACAT
GGTTGAGACGACGACGTCTTTTGGAGACAATACTCCGGTCAAGGGCTTTGGATCTACGGACAATCGCCGGTCAGGCTATA
TTGATTACGGCATCAATGCCCGCGGCACCTATCGGCTCAATGACCTGGTCGAAGTTGTTGGTGGCCTTCAGTACACAGCC
TATGAAGATGCCTCCGATGACTCTTTCGGGGTCAAGGATACCAAGGTCACCACGACCGGCGTCTATGGCGATCTGCGTCT
CAGCCTCCCGGTTCTGGAGGGGCTCAACGGTTCTTTCGCAATCCGTCAGGATTTCAATGACGGCTTCGATGACCAAATGA
TCTACAAGGTCGGCCTTCGCCAGAATCTTCCGGCCGGATTTTACGCGCGCGCCAGTGGCGGTACATCCTACTCCGCTCCC
AAGATTGACGAGATAGGCGCCTATGGGGCCAATCAAAATCTCAATCCTGGGCTTGAGCCGCAGTCAGTCGAAGCCCTCAA
TGCCGGCTTCGGGATGGACGGCACATTCGGTGATGCGACATTCAACATCGAGCTGGGCTACTTTCAGACAGATATTGAAA
ATCTCTTCGGCACACGGTCGGTAGAGTCAGTCTGCCTTCAATACGAAGGAAACCCATTCGATCTCGACATCATCAATCGC
AACCGCGAGAACATTGTTCCTCCCGATGCGTTCTGCTCCACAGCCGCAAGCAGCGGGCTCGATGGCGCAGAAGTTGTCGC
GGTCAACACGCGCGCGATCCAGGAAATTGAGGGGTTCACGGTCGATCTGGCATTCGATTATGGCGCATTCTCCGGGGACC
TTTCCTATACCATGATGGACTCTCTTGAGCCCAATCCGGTGTTCGGCCTTCCTGCGCGCCTTGATGGCACAACGACGGAT
CTCGATTTCGTTACACCGGGTGCTGCGGGATCAGATGAAAAGCGCCAATCTGGCGAACGTCCAGAATGGACACTATCAGC
GCTGCTGACCTACAAGCCGACCGAGCAATGGATATTTGCGCTCAACCCGCGCCTTCAGGGTGCGGAGTGGGCTCACGCTC
CAACGACAGCGGCTCGCCTGGTTGACGCGGATGGCAACCGCGTAGTCGACGATGTAAATTTTGGCGATTACTTCGTGCTC
AATGGCTCCATTCAGTATTTCTTCGGCGAGGACCGTCAACACCGCATTCTGATCCGCGGCGTGAATCTGCTCGATGAAGG
TTACTATGAGCGATACTCTGGCGGTGCTTCCTTGACGCTCGACAGAGCCGTTGTGCGCGGCGAGATCGGCGTCAACGACA
GTGCATATTATCGCCAATACGGCTGGAACGGAAAACCCCGCTCGGCCTGGGTGCAGTATGAGTACCGCTTCTGA

Upstream 100 bases:

>100_bases
GTGCCGGTAACCCAACTCCTGCGCGGTGAGAAGACCTGCGCCAAGCATTTGCGGCTGTACCGGCGCGGTCCGGTTCAGCC
TGAACCTCGGAGGGGTGACG

Downstream 100 bases:

>100_bases
TCTGGCGTGGCGGTGAGGGTAAGCCTCACCGCCTTGTCATCCCGGCTGGCCGCTGCCCCCGGAGTGGCCAGCCGGCCCTT
CTCCTCTCATCGATCATTCG

Product: outer membrane receptor (OMR) family protein

Products: NA

Alternate protein names: NB-Dependent Receptor For Transport Vitamin B; Receptor; Outer Membrane Receptor For Ferrienterochelin And Colicins; Outer Membrane Receptor Family Protein; Nb-Dependent Receptor Plug

Number of amino acids: Translated: 877; Mature: 877

Protein sequence:

>877_residues
MIYDLRKKLLWSVGAVLVSASFAAPVMAQTEAAEEDEARLSTVLVEGRRVDEATPLAIDMVQFGNQVQLIDAEKIETGGF
TNFGEAAAGLIRGANIGYSPDEGEFTIRIDGGTDRDTLLLVDGVPYFDRSSPSEDLWPATAIDPRMIDSVEVYRGGQSLY
FGSNGGLGVVSVKTKEPDGTKKGQIGVYGGSFKTREIYGNVSMPIDAEGKHSFLVYGRSYHSDAHELFDVSAFGDNVLAL
GGFQPYPYDFNSLGAKYLWQIDATSELRLGASFSTIDFHDSFPNSTVFAQNFTEFPIYTANYEKSFSDNFRIEVDSHWQK
PQLKNHEVLARVCRTPRLQDLPENVRALASEQGITDFASAAQFEAFAATVPNLSAGCVTNPYGTTGGAATSAQNGWMVNQ
DPNSPYFGQAYGTVQNPFPIGAPIGYMVETTTSFGDNTPVKGFGSTDNRRSGYIDYGINARGTYRLNDLVEVVGGLQYTA
YEDASDDSFGVKDTKVTTTGVYGDLRLSLPVLEGLNGSFAIRQDFNDGFDDQMIYKVGLRQNLPAGFYARASGGTSYSAP
KIDEIGAYGANQNLNPGLEPQSVEALNAGFGMDGTFGDATFNIELGYFQTDIENLFGTRSVESVCLQYEGNPFDLDIINR
NRENIVPPDAFCSTAASSGLDGAEVVAVNTRAIQEIEGFTVDLAFDYGAFSGDLSYTMMDSLEPNPVFGLPARLDGTTTD
LDFVTPGAAGSDEKRQSGERPEWTLSALLTYKPTEQWIFALNPRLQGAEWAHAPTTAARLVDADGNRVVDDVNFGDYFVL
NGSIQYFFGEDRQHRILIRGVNLLDEGYYERYSGGASLTLDRAVVRGEIGVNDSAYYRQYGWNGKPRSAWVQYEYRF

Sequences:

>Translated_877_residues
MIYDLRKKLLWSVGAVLVSASFAAPVMAQTEAAEEDEARLSTVLVEGRRVDEATPLAIDMVQFGNQVQLIDAEKIETGGF
TNFGEAAAGLIRGANIGYSPDEGEFTIRIDGGTDRDTLLLVDGVPYFDRSSPSEDLWPATAIDPRMIDSVEVYRGGQSLY
FGSNGGLGVVSVKTKEPDGTKKGQIGVYGGSFKTREIYGNVSMPIDAEGKHSFLVYGRSYHSDAHELFDVSAFGDNVLAL
GGFQPYPYDFNSLGAKYLWQIDATSELRLGASFSTIDFHDSFPNSTVFAQNFTEFPIYTANYEKSFSDNFRIEVDSHWQK
PQLKNHEVLARVCRTPRLQDLPENVRALASEQGITDFASAAQFEAFAATVPNLSAGCVTNPYGTTGGAATSAQNGWMVNQ
DPNSPYFGQAYGTVQNPFPIGAPIGYMVETTTSFGDNTPVKGFGSTDNRRSGYIDYGINARGTYRLNDLVEVVGGLQYTA
YEDASDDSFGVKDTKVTTTGVYGDLRLSLPVLEGLNGSFAIRQDFNDGFDDQMIYKVGLRQNLPAGFYARASGGTSYSAP
KIDEIGAYGANQNLNPGLEPQSVEALNAGFGMDGTFGDATFNIELGYFQTDIENLFGTRSVESVCLQYEGNPFDLDIINR
NRENIVPPDAFCSTAASSGLDGAEVVAVNTRAIQEIEGFTVDLAFDYGAFSGDLSYTMMDSLEPNPVFGLPARLDGTTTD
LDFVTPGAAGSDEKRQSGERPEWTLSALLTYKPTEQWIFALNPRLQGAEWAHAPTTAARLVDADGNRVVDDVNFGDYFVL
NGSIQYFFGEDRQHRILIRGVNLLDEGYYERYSGGASLTLDRAVVRGEIGVNDSAYYRQYGWNGKPRSAWVQYEYRF
>Mature_877_residues
MIYDLRKKLLWSVGAVLVSASFAAPVMAQTEAAEEDEARLSTVLVEGRRVDEATPLAIDMVQFGNQVQLIDAEKIETGGF
TNFGEAAAGLIRGANIGYSPDEGEFTIRIDGGTDRDTLLLVDGVPYFDRSSPSEDLWPATAIDPRMIDSVEVYRGGQSLY
FGSNGGLGVVSVKTKEPDGTKKGQIGVYGGSFKTREIYGNVSMPIDAEGKHSFLVYGRSYHSDAHELFDVSAFGDNVLAL
GGFQPYPYDFNSLGAKYLWQIDATSELRLGASFSTIDFHDSFPNSTVFAQNFTEFPIYTANYEKSFSDNFRIEVDSHWQK
PQLKNHEVLARVCRTPRLQDLPENVRALASEQGITDFASAAQFEAFAATVPNLSAGCVTNPYGTTGGAATSAQNGWMVNQ
DPNSPYFGQAYGTVQNPFPIGAPIGYMVETTTSFGDNTPVKGFGSTDNRRSGYIDYGINARGTYRLNDLVEVVGGLQYTA
YEDASDDSFGVKDTKVTTTGVYGDLRLSLPVLEGLNGSFAIRQDFNDGFDDQMIYKVGLRQNLPAGFYARASGGTSYSAP
KIDEIGAYGANQNLNPGLEPQSVEALNAGFGMDGTFGDATFNIELGYFQTDIENLFGTRSVESVCLQYEGNPFDLDIINR
NRENIVPPDAFCSTAASSGLDGAEVVAVNTRAIQEIEGFTVDLAFDYGAFSGDLSYTMMDSLEPNPVFGLPARLDGTTTD
LDFVTPGAAGSDEKRQSGERPEWTLSALLTYKPTEQWIFALNPRLQGAEWAHAPTTAARLVDADGNRVVDDVNFGDYFVL
NGSIQYFFGEDRQHRILIRGVNLLDEGYYERYSGGASLTLDRAVVRGEIGVNDSAYYRQYGWNGKPRSAWVQYEYRF

Specific function: Unknown

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 95811; Mature: 95811

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYDLRKKLLWSVGAVLVSASFAAPVMAQTEAAEEDEARLSTVLVEGRRVDEATPLAIDM
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHEEEEEECCCCCCCCCCEEEEH
VQFGNQVQLIDAEKIETGGFTNFGEAAAGLIRGANIGYSPDEGEFTIRIDGGTDRDTLLL
HHCCCEEEEEECCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEE
VDGVPYFDRSSPSEDLWPATAIDPRMIDSVEVYRGGQSLYFGSNGGLGVVSVKTKEPDGT
ECCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCEEEEECCCCEEEEEEEECCCCCC
KKGQIGVYGGSFKTREIYGNVSMPIDAEGKHSFLVYGRSYHSDAHELFDVSAFGDNVLAL
CCCEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHEEEECCCCCEEEE
GGFQPYPYDFNSLGAKYLWQIDATSELRLGASFSTIDFHDSFPNSTVFAQNFTEFPIYTA
CCCCCCCCCHHCCCCEEEEEECCCCCEEECCCEEEEECCCCCCCCEEEECCCCCCCEEEC
NYEKSFSDNFRIEVDSHWQKPQLKNHEVLARVCRTPRLQDLPENVRALASEQGITDFASA
CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHH
AQFEAFAATVPNLSAGCVTNPYGTTGGAATSAQNGWMVNQDPNSPYFGQAYGTVQNPFPI
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
GAPIGYMVETTTSFGDNTPVKGFGSTDNRRSGYIDYGINARGTYRLNDLVEVVGGLQYTA
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEHHHHHHHHCCCEEEE
YEDASDDSFGVKDTKVTTTGVYGDLRLSLPVLEGLNGSFAIRQDFNDGFDDQMIYKVGLR
ECCCCCCCCCCCCCEEEEEEEEEEEEEEEHHHHCCCCCEEEEECCCCCCCCCEEEEECCC
QNLPAGFYARASGGTSYSAPKIDEIGAYGANQNLNPGLEPQSVEALNAGFGMDGTFGDAT
CCCCCCEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEE
FNIELGYFQTDIENLFGTRSVESVCLQYEGNPFDLDIINRNRENIVPPDAFCSTAASSGL
EEEEECEEHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHCCC
DGAEVVAVNTRAIQEIEGFTVDLAFDYGAFSGDLSYTMMDSLEPNPVFGLPARLDGTTTD
CCCEEEEEEHHHHHHHCCEEEEEEEECCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCC
LDFVTPGAAGSDEKRQSGERPEWTLSALLTYKPTEQWIFALNPRLQGAEWAHAPTTAARL
CEEECCCCCCCCHHHHCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEE
VDADGNRVVDDVNFGDYFVLNGSIQYFFGEDRQHRILIRGVNLLDEGYYERYSGGASLTL
EECCCCEEEEECCCCCEEEECCEEEEEECCCCCCEEEEEECCHHHCCHHHHHCCCCEEEE
DRAVVRGEIGVNDSAYYRQYGWNGKPRSAWVQYEYRF
EEEEEECCCCCCCCHHHHHCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MIYDLRKKLLWSVGAVLVSASFAAPVMAQTEAAEEDEARLSTVLVEGRRVDEATPLAIDM
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHEEEEEECCCCCCCCCCEEEEH
VQFGNQVQLIDAEKIETGGFTNFGEAAAGLIRGANIGYSPDEGEFTIRIDGGTDRDTLLL
HHCCCEEEEEECCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEE
VDGVPYFDRSSPSEDLWPATAIDPRMIDSVEVYRGGQSLYFGSNGGLGVVSVKTKEPDGT
ECCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCEEEEECCCCEEEEEEEECCCCCC
KKGQIGVYGGSFKTREIYGNVSMPIDAEGKHSFLVYGRSYHSDAHELFDVSAFGDNVLAL
CCCEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHEEEECCCCCEEEE
GGFQPYPYDFNSLGAKYLWQIDATSELRLGASFSTIDFHDSFPNSTVFAQNFTEFPIYTA
CCCCCCCCCHHCCCCEEEEEECCCCCEEECCCEEEEECCCCCCCCEEEECCCCCCCEEEC
NYEKSFSDNFRIEVDSHWQKPQLKNHEVLARVCRTPRLQDLPENVRALASEQGITDFASA
CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHH
AQFEAFAATVPNLSAGCVTNPYGTTGGAATSAQNGWMVNQDPNSPYFGQAYGTVQNPFPI
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
GAPIGYMVETTTSFGDNTPVKGFGSTDNRRSGYIDYGINARGTYRLNDLVEVVGGLQYTA
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEHHHHHHHHCCCEEEE
YEDASDDSFGVKDTKVTTTGVYGDLRLSLPVLEGLNGSFAIRQDFNDGFDDQMIYKVGLR
ECCCCCCCCCCCCCEEEEEEEEEEEEEEEHHHHCCCCCEEEEECCCCCCCCCEEEEECCC
QNLPAGFYARASGGTSYSAPKIDEIGAYGANQNLNPGLEPQSVEALNAGFGMDGTFGDAT
CCCCCCEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEE
FNIELGYFQTDIENLFGTRSVESVCLQYEGNPFDLDIINRNRENIVPPDAFCSTAASSGL
EEEEECEEHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHCCC
DGAEVVAVNTRAIQEIEGFTVDLAFDYGAFSGDLSYTMMDSLEPNPVFGLPARLDGTTTD
CCCEEEEEEHHHHHHHCCEEEEEEEECCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCC
LDFVTPGAAGSDEKRQSGERPEWTLSALLTYKPTEQWIFALNPRLQGAEWAHAPTTAARL
CEEECCCCCCCCHHHHCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEE
VDADGNRVVDDVNFGDYFVLNGSIQYFFGEDRQHRILIRGVNLLDEGYYERYSGGASLTL
EECCCCEEEEECCCCCEEEECCEEEEEECCCCCCEEEEEECCHHHCCHHHHHCCCCEEEE
DRAVVRGEIGVNDSAYYRQYGWNGKPRSAWVQYEYRF
EEEEEECCCCCCCCHHHHHCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA