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The map label for this gene is secB

Identifier: 114798742

GI number: 114798742

Start: 3810

End: 4310

Strand: Reverse

Name: secB

Synonym: HNE_0006

Alternate gene names: 114798742

Gene position: 4310-3810 (Counterclockwise)

Preceding gene: 114798843

Following gene: NA

Centisome position: 0.12

GC content: 61.28

Gene sequence:

>501_bases
ATGACAGATACGAGCGCCGCCGGGAACCCCACCCCAGGTCAGCAGCCCGCCAATCCCCCGAGCCTTCGGGTGCTCGGCCA
GTATGTAAAGGATCTCTCCTTCGAGAATCCGGGCCATCCGCCGGTTCAGACGCAGCCCAATATCGATCTTGGGATTGATG
TCGGCGCCTCCCCTCACGCTGATGGAAACGGCCTGTTTGAGGTTTCTCTCAAGCTTTCGGCCAAAGCCTCTGCCGGTGAC
ACAGTCCTGTTCATTTCCGAACTGGACTATGCTGGCCTGTTCCAGCTGCAAAACGTGCCGGAAGGTCAGGTCGAAGCGAT
GCTGCTGATCGAGTGTCCGCGTCTGCTATTCCCGTTTGCGCGCCGGATCATCGCCGAGATCACCCGTGAGGGCGGCTTCC
CGCCCCTGCTCATCGACCCCGTTGATTTTGTGGCTCTCTATCAGTCGCAATACCGCCGCGCGGCAGAGCGCGCGCAGAAC
GGCAATGGCGGCGCGAGCTGA

Upstream 100 bases:

>100_bases
TAGGGAACACATAAGGCCAGTGGTGCCAGCTTGCCAGCCCATGCGTTGCACCTGACCGGCCTGCATGCTAGGCGCGGGAC
CCTAACTACAGAGGTGGATA

Downstream 100 bases:

>100_bases
CCCGCCCTCAGGGCAAGGTTTTCCAGAGCGCGTCTGCCCCAAGCTTTTCAACAAGCTCGGCATGGGCGGCGCGCTCTGCA
TCTGTCACCAGAGAAGCAAG

Product: protein-export protein SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MTDTSAAGNPTPGQQPANPPSLRVLGQYVKDLSFENPGHPPVQTQPNIDLGIDVGASPHADGNGLFEVSLKLSAKASAGD
TVLFISELDYAGLFQLQNVPEGQVEAMLLIECPRLLFPFARRIIAEITREGGFPPLLIDPVDFVALYQSQYRRAAERAQN
GNGGAS

Sequences:

>Translated_166_residues
MTDTSAAGNPTPGQQPANPPSLRVLGQYVKDLSFENPGHPPVQTQPNIDLGIDVGASPHADGNGLFEVSLKLSAKASAGD
TVLFISELDYAGLFQLQNVPEGQVEAMLLIECPRLLFPFARRIIAEITREGGFPPLLIDPVDFVALYQSQYRRAAERAQN
GNGGAS
>Mature_165_residues
TDTSAAGNPTPGQQPANPPSLRVLGQYVKDLSFENPGHPPVQTQPNIDLGIDVGASPHADGNGLFEVSLKLSAKASAGDT
VLFISELDYAGLFQLQNVPEGQVEAMLLIECPRLLFPFARRIIAEITREGGFPPLLIDPVDFVALYQSQYRRAAERAQNG
NGGAS

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=131, Percent_Identity=35.1145038167939, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_HYPNA (Q0C6A3)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_758740.1
- ProteinModelPortal:   Q0C6A3
- SMR:   Q0C6A3
- STRING:   Q0C6A3
- GeneID:   4287977
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_0006
- NMPDR:   fig|228405.5.peg.6
- TIGR:   HNE_0006
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q0C6A3
- ProtClustDB:   CLSK2531881
- BioCyc:   HNEP81032:HNE_0006-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17728; Mature: 17597

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTSAAGNPTPGQQPANPPSLRVLGQYVKDLSFENPGHPPVQTQPNIDLGIDVGASPHA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCC
DGNGLFEVSLKLSAKASAGDTVLFISELDYAGLFQLQNVPEGQVEAMLLIECPRLLFPFA
CCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCEEECCCCCCHHHEEHHHHCHHHHHHHH
RRIIAEITREGGFPPLLIDPVDFVALYQSQYRRAAERAQNGNGGAS
HHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TDTSAAGNPTPGQQPANPPSLRVLGQYVKDLSFENPGHPPVQTQPNIDLGIDVGASPHA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCC
DGNGLFEVSLKLSAKASAGDTVLFISELDYAGLFQLQNVPEGQVEAMLLIECPRLLFPFA
CCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCEEECCCCCCHHHEEHHHHCHHHHHHHH
RRIIAEITREGGFPPLLIDPVDFVALYQSQYRRAAERAQNGNGGAS
HHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA