Click here to switch to the map view.

The map label for this gene is yfjD [H]

Identifier: 114798726

GI number: 114798726

Start: 67214

End: 68488

Strand: Direct

Name: yfjD [H]

Synonym: HNE_0083

Alternate gene names: 114798726

Gene position: 67214-68488 (Clockwise)

Preceding gene: 114797725

Following gene: 114797765

Centisome position: 1.81

GC content: 61.33

Gene sequence:

>1275_bases
ATGATCGCCGGATATGCCATCGCAATTGTCATCCTTCTGATGATGTCTGCCTTCTTCTCAGGCTCTGAAACAGCTCTGAC
AGCGGCGTCTCGTGCCCGGATGCACGCTTTGGAACGCGATGGCGACAAGCGCGCGCGGACGGTGAACCAGCTGATCGCGA
ACAGGGAAAACTTCATCGGCGCGATCCTGCTCGGGAACAATGTCGTCAATATCCTGGCCTCGGTTCTGGCCACCACGATG
TTTACCAGCCTGTTCGGGCAGGGGGGGCTGGCGCTTGTGCTCGCGACCGCCGTGATGACCGTGCTTGTGCTGATCTTCTC
CGAAGTGATGCCGAAGACCTATGCCATCACGCGGCCTGATTCCGTCGCGCTTGTTGTGGCTGGCCCGATTTCCGTGGTGG
TGAAAACCGCGTCCTGGATCATCAAGCTGATCCAGATGATCGTGAACGGTGTTCTCCGGCTGGTGGGCGTGGGCGCAGCG
GCCAGCCCGCTTTCCGCCGAAGAGGAAATCCGCGGCGCCATTGATCTGCACGCCGCCGAAGGCGCGGTGGACAAGGAAAA
CCATCTCCGCCTCGTCGGCGCGCTGGACCTTAAGGACCTCACCGTCGAAGACGTGATGATCCACCGCAAGAACATCTACA
TGCTCGATGCAGACCTGGAGCCGCGCCAGCTGATCATGAAAGCGCTTTCAAGCCCGCACACCCGTCTGCCGCTGTACCGG
GGGGAGAAAGAAGAGATCATCGGCATCCTGCATGCCAAGGACCTTCTTCGGGCCGCCCTTCCGCTGGGCGGGGATGTCTC
CAAGCTTGATCTCGACTCCATCCTGCGCAAGCCCTGGTTCGTGCCGGAAACAACCCCGGTTCAGGAACAGCTCAACCAGT
TCCTCGCGCGCGGCCAGCACTTTGCCCTCGTGATTGACGAGTATGGCGAGCTGCAGGGCCTCATCACGCTGGAGGACATC
CTCGAAGAAATCGTCGGCGCCATTCATGACGAGCATGACGTCCAGATCCAGGGCGTGCGGCCACAGCCCGATGGCTCGGT
CAATGTCGATGGCTGGGTGCCGATCCGCGACCTCAACCGGGCGACCGGTTGGGATCTGCCCGATGAAGAAGCGGTCACGG
TTGCCGGTCTCGTCATCCATGAGGCCCAGACGATCCCCGAGCCCGGCCAGAGCTTCGTGTTCCATGGCTACCGGTTCAAC
GTCCTGCGCCGGCAGAGAAATCAGGTGACGGGGGTGAATGTTTCGAAGGCCGCCCCGGTTGCCGAAGTGGACTAG

Upstream 100 bases:

>100_bases
GGCGCGGCTTACGTCCATCCCGATGCGGACCTTGCTTCGGTCGAACGCTTTCTCGCATCTGAACTTGCCTAACTCATTTT
ACAGAAACTGAGCCCACATA

Downstream 100 bases:

>100_bases
GCCGGATCAGTCCGCCTCAGGCGGGCGGGCTTTCAGCGTCAGGGCGTGCAGGCCGCTGTCAAATTCCTGCTGCAACACCA
TCATTACCGCGCGCTGGACC

Product: CBS/transporter associated domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MIAGYAIAIVILLMMSAFFSGSETALTAASRARMHALERDGDKRARTVNQLIANRENFIGAILLGNNVVNILASVLATTM
FTSLFGQGGLALVLATAVMTVLVLIFSEVMPKTYAITRPDSVALVVAGPISVVVKTASWIIKLIQMIVNGVLRLVGVGAA
ASPLSAEEEIRGAIDLHAAEGAVDKENHLRLVGALDLKDLTVEDVMIHRKNIYMLDADLEPRQLIMKALSSPHTRLPLYR
GEKEEIIGILHAKDLLRAALPLGGDVSKLDLDSILRKPWFVPETTPVQEQLNQFLARGQHFALVIDEYGELQGLITLEDI
LEEIVGAIHDEHDVQIQGVRPQPDGSVNVDGWVPIRDLNRATGWDLPDEEAVTVAGLVIHEAQTIPEPGQSFVFHGYRFN
VLRRQRNQVTGVNVSKAAPVAEVD

Sequences:

>Translated_424_residues
MIAGYAIAIVILLMMSAFFSGSETALTAASRARMHALERDGDKRARTVNQLIANRENFIGAILLGNNVVNILASVLATTM
FTSLFGQGGLALVLATAVMTVLVLIFSEVMPKTYAITRPDSVALVVAGPISVVVKTASWIIKLIQMIVNGVLRLVGVGAA
ASPLSAEEEIRGAIDLHAAEGAVDKENHLRLVGALDLKDLTVEDVMIHRKNIYMLDADLEPRQLIMKALSSPHTRLPLYR
GEKEEIIGILHAKDLLRAALPLGGDVSKLDLDSILRKPWFVPETTPVQEQLNQFLARGQHFALVIDEYGELQGLITLEDI
LEEIVGAIHDEHDVQIQGVRPQPDGSVNVDGWVPIRDLNRATGWDLPDEEAVTVAGLVIHEAQTIPEPGQSFVFHGYRFN
VLRRQRNQVTGVNVSKAAPVAEVD
>Mature_424_residues
MIAGYAIAIVILLMMSAFFSGSETALTAASRARMHALERDGDKRARTVNQLIANRENFIGAILLGNNVVNILASVLATTM
FTSLFGQGGLALVLATAVMTVLVLIFSEVMPKTYAITRPDSVALVVAGPISVVVKTASWIIKLIQMIVNGVLRLVGVGAA
ASPLSAEEEIRGAIDLHAAEGAVDKENHLRLVGALDLKDLTVEDVMIHRKNIYMLDADLEPRQLIMKALSSPHTRLPLYR
GEKEEIIGILHAKDLLRAALPLGGDVSKLDLDSILRKPWFVPETTPVQEQLNQFLARGQHFALVIDEYGELQGLITLEDI
LEEIVGAIHDEHDVQIQGVRPQPDGSVNVDGWVPIRDLNRATGWDLPDEEAVTVAGLVIHEAQTIPEPGQSFVFHGYRFN
VLRRQRNQVTGVNVSKAAPVAEVD

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=379, Percent_Identity=25.3298153034301, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI94681046, Length=335, Percent_Identity=24.7761194029851, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI40068053, Length=347, Percent_Identity=26.2247838616715, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40068055, Length=347, Percent_Identity=26.2247838616715, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI145693175, Length=415, Percent_Identity=33.7349397590361, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI1790664, Length=413, Percent_Identity=25.4237288135593, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1786879, Length=233, Percent_Identity=32.1888412017167, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87082033, Length=286, Percent_Identity=31.1188811188811, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1788119, Length=284, Percent_Identity=30.2816901408451, Blast_Score=86, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI71980512, Length=353, Percent_Identity=28.0453257790368, Blast_Score=91, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6324512, Length=352, Percent_Identity=23.8636363636364, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46144; Mature: 46144

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAGYAIAIVILLMMSAFFSGSETALTAASRARMHALERDGDKRARTVNQLIANRENFIG
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEE
AILLGNNVVNILASVLATTMFTSLFGQGGLALVLATAVMTVLVLIFSEVMPKTYAITRPD
EEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
SVALVVAGPISVVVKTASWIIKLIQMIVNGVLRLVGVGAAASPLSAEEEIRGAIDLHAAE
CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHEEECCC
GAVDKENHLRLVGALDLKDLTVEDVMIHRKNIYMLDADLEPRQLIMKALSSPHTRLPLYR
CCCCCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCC
GEKEEIIGILHAKDLLRAALPLGGDVSKLDLDSILRKPWFVPETTPVQEQLNQFLARGQH
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCE
FALVIDEYGELQGLITLEDILEEIVGAIHDEHDVQIQGVRPQPDGSVNVDGWVPIRDLNR
EEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEHHHCCC
ATGWDLPDEEAVTVAGLVIHEAQTIPEPGQSFVFHGYRFNVLRRQRNQVTGVNVSKAAPV
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCC
AEVD
CCCC
>Mature Secondary Structure
MIAGYAIAIVILLMMSAFFSGSETALTAASRARMHALERDGDKRARTVNQLIANRENFIG
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEE
AILLGNNVVNILASVLATTMFTSLFGQGGLALVLATAVMTVLVLIFSEVMPKTYAITRPD
EEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
SVALVVAGPISVVVKTASWIIKLIQMIVNGVLRLVGVGAAASPLSAEEEIRGAIDLHAAE
CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHEEECCC
GAVDKENHLRLVGALDLKDLTVEDVMIHRKNIYMLDADLEPRQLIMKALSSPHTRLPLYR
CCCCCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCC
GEKEEIIGILHAKDLLRAALPLGGDVSKLDLDSILRKPWFVPETTPVQEQLNQFLARGQH
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCE
FALVIDEYGELQGLITLEDILEEIVGAIHDEHDVQIQGVRPQPDGSVNVDGWVPIRDLNR
EEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEHHHCCC
ATGWDLPDEEAVTVAGLVIHEAQTIPEPGQSFVFHGYRFNVLRRQRNQVTGVNVSKAAPV
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCC
AEVD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]