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The map label for this gene is yfdE [H]

Identifier: 114798700

GI number: 114798700

Start: 2028087

End: 2029289

Strand: Reverse

Name: yfdE [H]

Synonym: HNE_1959

Alternate gene names: 114798700

Gene position: 2029289-2028087 (Counterclockwise)

Preceding gene: 114797892

Following gene: 114800007

Centisome position: 54.77

GC content: 60.43

Gene sequence:

>1203_bases
ATGCCATCATTGCCGCCCCGTACAGGCCCGCTTACCGATTTGCGGGTCATAGAACTTGGACAGCTGATCGCAGGTCCATT
CTGTGGACAGATATTTGCCGACATGGGCGCCGACGTGATCAAGGTGGAACCGCCTGGGCAGGGCGACCCGCTGCGTGACT
GGGGCCGGGAAGGATTTCCGCTCTGGTGGTCAGTCGTGGCGCGCGGCAAACGCTGCATCACCTCGAACCTTCGGGAAGCA
GAAGGTCAGGACATCGTGCGCAAGCTCGTCGCGCAGGCTGATTTCCTCCTGGAGAATTTTCGCCCCGGAACATTGGAGAA
GTGGGGGCTGGGCTATGAGGCACTCAGGGAAATCAATCCGCGCCTGATCATGATCCGCGTTTCAGGTTATGGGCAGACGG
GCCCCTATGCCTCTCGCGCCGGCTATGCCTCGGTGGGCGAAGCAATGGGCGGACTGCGGTATGTGATGGGTGAAGCAGAC
CGGCGCCCTTCGCGGGCGGGCATTTCCTTGGGCGACAGTCTGGCCGGTGTGTATGCCGCGCTCGGCGCTCTGGCGGCTTT
GCATCACCGTGAAAAAACCGGCGAAGGCCAGATGATAGATGCGACGATCTACGAGTCGGTGCTCTCGGTCATGGAGGCGC
TTGTGCCCGAACACCAGTTTGAGGGCTATACGCGCGAACGGTCCGGGTCGATCCTGCCCAATATTGCGCCCTCCAACATT
TATGAAGGCTGTGATGGCATGGTCATCATCGCAGCTAATCAGGATACGGTGTTTGCCCGGCTTTGTGTGGCCATCGGCCT
GCCAGATCTGAAGGACGACCCCGAATACAAATCCCACGTCGCACGCGGGCGCAATCAAAAGGCGCTCGACGACATGATCC
AGGCTTGGGCCGCGTCGCGCACGATCGATGAGATCGAGCAGATTATGATCGAGAACGGCGTGCCGGTTGGCAAGGTTTAC
CGCGCCGCAGACATGCTGAATGATCCCCACTACGCTGCGCGCGAGTCCCTCACCGAAGTGCCCAGCCCGCGTTGGCCGGG
CATCAAACAGCAGAACGTCTTTCCCAAACTGTCTGCGACACCCGGTAAAATCCGCTGGGCTGGCCCGGAGTCCATCGGTC
AGCATACCGAAGAGGTTCTGACAGAGCTGCTGGACCTGACCCCAGAGCAGGTCGAGAAGCTTCGTGCCAGCGGGATAATC
TGA

Upstream 100 bases:

>100_bases
GCAAAGCTGCGTCCAGCTGATCTACCGCTAACCCTTCCTGTAGCTTGCCGCCCCGCAGATTTCCTGATTGGAACGCAGGG
CCGCATCCGGGAGGAACACC

Downstream 100 bases:

>100_bases
AACGAAGGTAAAACAGATGCCAAAGATCGATATCCCTTCAGCGCCACAAGGTAAGGGAACGCGCTATCCATCTCCGCATG
GTGATCCGTGTGCGCAGCGT

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MPSLPPRTGPLTDLRVIELGQLIAGPFCGQIFADMGADVIKVEPPGQGDPLRDWGREGFPLWWSVVARGKRCITSNLREA
EGQDIVRKLVAQADFLLENFRPGTLEKWGLGYEALREINPRLIMIRVSGYGQTGPYASRAGYASVGEAMGGLRYVMGEAD
RRPSRAGISLGDSLAGVYAALGALAALHHREKTGEGQMIDATIYESVLSVMEALVPEHQFEGYTRERSGSILPNIAPSNI
YEGCDGMVIIAANQDTVFARLCVAIGLPDLKDDPEYKSHVARGRNQKALDDMIQAWAASRTIDEIEQIMIENGVPVGKVY
RAADMLNDPHYAARESLTEVPSPRWPGIKQQNVFPKLSATPGKIRWAGPESIGQHTEEVLTELLDLTPEQVEKLRASGII

Sequences:

>Translated_400_residues
MPSLPPRTGPLTDLRVIELGQLIAGPFCGQIFADMGADVIKVEPPGQGDPLRDWGREGFPLWWSVVARGKRCITSNLREA
EGQDIVRKLVAQADFLLENFRPGTLEKWGLGYEALREINPRLIMIRVSGYGQTGPYASRAGYASVGEAMGGLRYVMGEAD
RRPSRAGISLGDSLAGVYAALGALAALHHREKTGEGQMIDATIYESVLSVMEALVPEHQFEGYTRERSGSILPNIAPSNI
YEGCDGMVIIAANQDTVFARLCVAIGLPDLKDDPEYKSHVARGRNQKALDDMIQAWAASRTIDEIEQIMIENGVPVGKVY
RAADMLNDPHYAARESLTEVPSPRWPGIKQQNVFPKLSATPGKIRWAGPESIGQHTEEVLTELLDLTPEQVEKLRASGII
>Mature_399_residues
PSLPPRTGPLTDLRVIELGQLIAGPFCGQIFADMGADVIKVEPPGQGDPLRDWGREGFPLWWSVVARGKRCITSNLREAE
GQDIVRKLVAQADFLLENFRPGTLEKWGLGYEALREINPRLIMIRVSGYGQTGPYASRAGYASVGEAMGGLRYVMGEADR
RPSRAGISLGDSLAGVYAALGALAALHHREKTGEGQMIDATIYESVLSVMEALVPEHQFEGYTRERSGSILPNIAPSNIY
EGCDGMVIIAANQDTVFARLCVAIGLPDLKDDPEYKSHVARGRNQKALDDMIQAWAASRTIDEIEQIMIENGVPVGKVYR
AADMLNDPHYAARESLTEVPSPRWPGIKQQNVFPKLSATPGKIRWAGPESIGQHTEEVLTELLDLTPEQVEKLRASGII

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=395, Percent_Identity=30.126582278481, Blast_Score=209, Evalue=5e-54,
Organism=Homo sapiens, GI300863124, Length=419, Percent_Identity=29.5942720763723, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI300863126, Length=395, Percent_Identity=27.5949367088608, Blast_Score=160, Evalue=1e-39,
Organism=Homo sapiens, GI13376042, Length=419, Percent_Identity=25.7756563245823, Blast_Score=153, Evalue=3e-37,
Organism=Homo sapiens, GI266456254, Length=403, Percent_Identity=30.0248138957816, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI42794625, Length=403, Percent_Identity=30.0248138957816, Blast_Score=139, Evalue=3e-33,
Organism=Homo sapiens, GI266458393, Length=276, Percent_Identity=32.9710144927536, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI266458397, Length=255, Percent_Identity=32.5490196078431, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI266458395, Length=132, Percent_Identity=39.3939393939394, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI42822893, Length=132, Percent_Identity=39.3939393939394, Blast_Score=97, Evalue=4e-20,
Organism=Escherichia coli, GI87082093, Length=377, Percent_Identity=34.2175066312997, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI1788717, Length=404, Percent_Identity=30.6930693069307, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1786222, Length=408, Percent_Identity=29.1666666666667, Blast_Score=145, Evalue=4e-36,
Organism=Caenorhabditis elegans, GI115535051, Length=200, Percent_Identity=35.5, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=214, Percent_Identity=31.7757009345794, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=32.5757575757576, Blast_Score=219, Evalue=4e-57,
Organism=Drosophila melanogaster, GI24585488, Length=401, Percent_Identity=30.4239401496259, Blast_Score=140, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43741; Mature: 43610

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLPPRTGPLTDLRVIELGQLIAGPFCGQIFADMGADVIKVEPPGQGDPLRDWGREGFP
CCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCCCCH
LWWSVVARGKRCITSNLREAEGQDIVRKLVAQADFLLENFRPGTLEKWGLGYEALREINP
HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHCCC
RLIMIRVSGYGQTGPYASRAGYASVGEAMGGLRYVMGEADRRPSRAGISLGDSLAGVYAA
EEEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
LGALAALHHREKTGEGQMIDATIYESVLSVMEALVPEHQFEGYTRERSGSILPNIAPSNI
HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCHHHHCCCCHHCCCCCCCCCCCHHH
YEGCDGMVIIAANQDTVFARLCVAIGLPDLKDDPEYKSHVARGRNQKALDDMIQAWAASR
HCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHC
TIDEIEQIMIENGVPVGKVYRAADMLNDPHYAARESLTEVPSPRWPGIKQQNVFPKLSAT
CHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PGKIRWAGPESIGQHTEEVLTELLDLTPEQVEKLRASGII
CCCEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure 
PSLPPRTGPLTDLRVIELGQLIAGPFCGQIFADMGADVIKVEPPGQGDPLRDWGREGFP
CCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCCCCH
LWWSVVARGKRCITSNLREAEGQDIVRKLVAQADFLLENFRPGTLEKWGLGYEALREINP
HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHCCC
RLIMIRVSGYGQTGPYASRAGYASVGEAMGGLRYVMGEADRRPSRAGISLGDSLAGVYAA
EEEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
LGALAALHHREKTGEGQMIDATIYESVLSVMEALVPEHQFEGYTRERSGSILPNIAPSNI
HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCHHHHCCCCHHCCCCCCCCCCCHHH
YEGCDGMVIIAANQDTVFARLCVAIGLPDLKDDPEYKSHVARGRNQKALDDMIQAWAASR
HCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHC
TIDEIEQIMIENGVPVGKVYRAADMLNDPHYAARESLTEVPSPRWPGIKQQNVFPKLSAT
CHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PGKIRWAGPESIGQHTEEVLTELLDLTPEQVEKLRASGII
CCCEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]