Click here to switch to the map view.

The map label for this gene is yqxC [H]

Identifier: 114798580

GI number: 114798580

Start: 841126

End: 841875

Strand: Direct

Name: yqxC [H]

Synonym: HNE_0818

Alternate gene names: 114798580

Gene position: 841126-841875 (Clockwise)

Preceding gene: 114800053

Following gene: 114798952

Centisome position: 22.7

GC content: 63.87

Gene sequence:

>750_bases
ATGACCGAGTTTGAACCACCCGAGCGGGACCGCGCCGACAAGGTACTGTTGGCGCTCGGTCATTTCGAGAGCCGCGCAGG
CGCGCAGGCCGCCATCGCCGCCGGACGGGTCAAGGCGGATGGGCAGGTGATCCGCAAACCCTCGGAGATGATTTCCCGCA
GCGCCGCCATCGAGGCCGAAGCGGCGCACCCCTACGTCTCGCGCGGCGGGCTGAAACTCGTCCATGCCCTGGATGTCTTC
AGCATCGATGTCGCGGGAAAGGTCTGTCTTGATCTTGGCGCGTCAACCGGCGGCTTCACGGATGTTCTGCTGCAAAAGGG
CGCGGCGCATGTCACGGCCATCGATGTTGGCCACGGCCAGCTGCATCCAAAGATCGCCGCTGATCCGCGCGTGACGGCTC
ATGAGGGGCTGAATGCCCGCGACCTGTCACCGAACCATATGAAGTCGGCGCCTGAGATCATCGTCTGTGATCTGAGCTTT
GTATCCCTGCACAAGGTGCTTCCTGTGCCGCTTTCGCTGGCAACGCCGGACGCCGCGCTGATTGCCCTCTTCAAACCCCA
GTTTGAAGTCGGGCCGGAGAATGTCGGCAAGGGTGGCATTGTCACCGATCAGACCGCCGTAGAGCAGGCGCTTGGCGCCT
TTCCTGCATTCCTGTCCGGCTGCGGCTGGCTTGCGCAGGCCCCCATCCCCAGCCCGATAGAGGGCGGGGACGGAAACCGC
GAATACCTGTTTCTGGCAAGGCGGCGCTGA

Upstream 100 bases:

>100_bases
GGGCTCGCGCGCAAGTCTCGGGTGAAACCGGTGCTGGCACAGACAGGGCGCCTCGGTCTAAACGACAGAAAGCCCCGCCC
TTTCCGCAGGACCCGAAGCG

Downstream 100 bases:

>100_bases
CTATTCCTGCGCTGCAACCGTAAACGGCACTTCGATCTCTTCGGTCGTTCCATCTTCAAATTGTGCGCGGACCAAAACCG
TAACCGCTGCGCCAGGCGTC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MTEFEPPERDRADKVLLALGHFESRAGAQAAIAAGRVKADGQVIRKPSEMISRSAAIEAEAAHPYVSRGGLKLVHALDVF
SIDVAGKVCLDLGASTGGFTDVLLQKGAAHVTAIDVGHGQLHPKIAADPRVTAHEGLNARDLSPNHMKSAPEIIVCDLSF
VSLHKVLPVPLSLATPDAALIALFKPQFEVGPENVGKGGIVTDQTAVEQALGAFPAFLSGCGWLAQAPIPSPIEGGDGNR
EYLFLARRR

Sequences:

>Translated_249_residues
MTEFEPPERDRADKVLLALGHFESRAGAQAAIAAGRVKADGQVIRKPSEMISRSAAIEAEAAHPYVSRGGLKLVHALDVF
SIDVAGKVCLDLGASTGGFTDVLLQKGAAHVTAIDVGHGQLHPKIAADPRVTAHEGLNARDLSPNHMKSAPEIIVCDLSF
VSLHKVLPVPLSLATPDAALIALFKPQFEVGPENVGKGGIVTDQTAVEQALGAFPAFLSGCGWLAQAPIPSPIEGGDGNR
EYLFLARRR
>Mature_248_residues
TEFEPPERDRADKVLLALGHFESRAGAQAAIAAGRVKADGQVIRKPSEMISRSAAIEAEAAHPYVSRGGLKLVHALDVFS
IDVAGKVCLDLGASTGGFTDVLLQKGAAHVTAIDVGHGQLHPKIAADPRVTAHEGLNARDLSPNHMKSAPEIIVCDLSFV
SLHKVLPVPLSLATPDAALIALFKPQFEVGPENVGKGGIVTDQTAVEQALGAFPAFLSGCGWLAQAPIPSPIEGGDGNRE
YLFLARRR

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26170; Mature: 26039

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEFEPPERDRADKVLLALGHFESRAGAQAAIAAGRVKADGQVIRKPSEMISRSAAIEAE
CCCCCCCCCCCHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHCCCHHHHHHHHHHCCCC
AAHPYVSRGGLKLVHALDVFSIDVAGKVCLDLGASTGGFTDVLLQKGAAHVTAIDVGHGQ
CCCCCHHCCCEEEEEEHHEEEECCCCHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCC
LHPKIAADPRVTAHEGLNARDLSPNHMKSAPEIIVCDLSFVSLHKVLPVPLSLATPDAAL
CCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCEEEECCHHHHHHHHCCCCEEECCCCCEE
IALFKPQFEVGPENVGKGGIVTDQTAVEQALGAFPAFLSGCGWLAQAPIPSPIEGGDGNR
EEEECCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCE
EYLFLARRR
EEEEEEECC
>Mature Secondary Structure 
TEFEPPERDRADKVLLALGHFESRAGAQAAIAAGRVKADGQVIRKPSEMISRSAAIEAE
CCCCCCCCCCHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHCCCHHHHHHHHHHCCCC
AAHPYVSRGGLKLVHALDVFSIDVAGKVCLDLGASTGGFTDVLLQKGAAHVTAIDVGHGQ
CCCCCHHCCCEEEEEEHHEEEECCCCHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCC
LHPKIAADPRVTAHEGLNARDLSPNHMKSAPEIIVCDLSFVSLHKVLPVPLSLATPDAAL
CCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCEEEECCHHHHHHHHCCCCEEECCCCCEE
IALFKPQFEVGPENVGKGGIVTDQTAVEQALGAFPAFLSGCGWLAQAPIPSPIEGGDGNR
EEEECCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCE
EYLFLARRR
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]