| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is ycbL [C]
Identifier: 114798441
GI number: 114798441
Start: 3034637
End: 3035536
Strand: Reverse
Name: ycbL [C]
Synonym: HNE_2876
Alternate gene names: 114798441
Gene position: 3035536-3034637 (Counterclockwise)
Preceding gene: 114799472
Following gene: 114799455
Centisome position: 81.93
GC content: 62.33
Gene sequence:
>900_bases ATGGCCATTCCTTTTGTCCGGGAAATTGAGTTCGAATACGGACGGGTTGATCAGGTCTCCCCTCTGGTCCGCCGTGTGAT TGCCAACAATCCCGGCCCGTTCACCTATACCGGCACCGGCGTGTTCATTGTCGGCAAGGGCGAAGTGGCCGTGATCGATC CGGGCCCGGATCTTGCTGAACATTTCGACGCGTTGAAGGCGGCGCTGGCGGGTGAAACCGTTACGCATGTTCTGGTCACG CACGGGCATTCGGATCATTCGCCGCTGGCCGGACCTCTGGCGGAGTGGGCGGGCTGCAAAACCTATGCGCGCGAAGCCGG TATCCATACCGCCAAGGACGAACTCGGCAGCGCGGATGACCTGCGCTTTACGCCGGACGTGAAGCTGCGCGACGGGGATG TGGTCTCCGGTCCCGGCTGGACGATCGAGGCGATTTTTACGCCTGGCCACACCGCCAACCATACCTGCTTTGCGCTGCGC GAAGAGAATGCCTGTTTCACCGGTGACCATGTCATGGGCTGGTCCACCACGGTTGTCTCCCCGCCTGACGGGGACATGAG CGACTATATGGAAAGCCTCGAGAAGATCCGTGTGCGCGGATTTGAAACGCTGTGGCCGACCCATGGCGAGGCGATCCGTG GCCAGGAATTCGTGAATACCTTCATCACCGAATACGCCGCCCATCGCCGGGCCCGCGAGGCGGCCATCATCGAGCAGATG CGCCGGGGACGGACGAACATTCCGGAGATGGTTTCCGAAATGTATGCCGATGTCGACAAGCGCCTGCATCCGGCCGCTGC GATGAGCGTGCTGGGCCACATGATTGATCTGGTCCGCCGCGGCGTGGCGCGCACGCCTGACAGCGCGCCGACGACACGGT CGGTGTTCGAACTGGCCTGA
Upstream 100 bases:
>100_bases GAAGCTGAGAGCGACCCGCCGCATGGCGCGTGCCTTTGCCGAGAAGTTTGCAACGAAGAAGCGTTGATCCGCCCACAACC TTTTGGTGCGAGATAAACCC
Downstream 100 bases:
>100_bases CCGGTCCTGGCCTGATCAGTCCTCGCGGCGCACCCGGAAGGCCAGGCCGCCATCGATCTTCATCTTGTAGCTGCCCAGCG CCGCCTGATAGATTTCGGCG
Product: metallo-beta-lactamase family protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Hydrolase; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase-Like; Hydroxyacylglutathione Hydrolase; Zn-Dependent Hydrolase Glyoxylase; Beta-Lactamase Family Protein; Beta-Lactamase-Like Protein; Beta-Lactamase; Zn-Dependent Hydrolase; Metallo-Beta-Lactamase Domain Protein; Hydrolase Protein; Zinc-Dependent Hydrolase; Hydrolase/Glyoxylase; Metallo-Beta-Lactamase Family Hydrolase; Nudix Hydrolase; NUDIX HydrolaseBeta-Lactamase-Like; Beta-Lactamase Class B; Zn-Dependent Hydrolase Including Glyoxylase-Like Protein; Glyoxalase II Family Protein; Beta-Lactamase-Like Hydrolase
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MAIPFVREIEFEYGRVDQVSPLVRRVIANNPGPFTYTGTGVFIVGKGEVAVIDPGPDLAEHFDALKAALAGETVTHVLVT HGHSDHSPLAGPLAEWAGCKTYAREAGIHTAKDELGSADDLRFTPDVKLRDGDVVSGPGWTIEAIFTPGHTANHTCFALR EENACFTGDHVMGWSTTVVSPPDGDMSDYMESLEKIRVRGFETLWPTHGEAIRGQEFVNTFITEYAAHRRAREAAIIEQM RRGRTNIPEMVSEMYADVDKRLHPAAAMSVLGHMIDLVRRGVARTPDSAPTTRSVFELA
Sequences:
>Translated_299_residues MAIPFVREIEFEYGRVDQVSPLVRRVIANNPGPFTYTGTGVFIVGKGEVAVIDPGPDLAEHFDALKAALAGETVTHVLVT HGHSDHSPLAGPLAEWAGCKTYAREAGIHTAKDELGSADDLRFTPDVKLRDGDVVSGPGWTIEAIFTPGHTANHTCFALR EENACFTGDHVMGWSTTVVSPPDGDMSDYMESLEKIRVRGFETLWPTHGEAIRGQEFVNTFITEYAAHRRAREAAIIEQM RRGRTNIPEMVSEMYADVDKRLHPAAAMSVLGHMIDLVRRGVARTPDSAPTTRSVFELA >Mature_298_residues AIPFVREIEFEYGRVDQVSPLVRRVIANNPGPFTYTGTGVFIVGKGEVAVIDPGPDLAEHFDALKAALAGETVTHVLVTH GHSDHSPLAGPLAEWAGCKTYAREAGIHTAKDELGSADDLRFTPDVKLRDGDVVSGPGWTIEAIFTPGHTANHTCFALRE ENACFTGDHVMGWSTTVVSPPDGDMSDYMESLEKIRVRGFETLWPTHGEAIRGQEFVNTFITEYAAHRRAREAAIIEQMR RGRTNIPEMVSEMYADVDKRLHPAAAMSVLGHMIDLVRRGVARTPDSAPTTRSVFELA
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI7705793, Length=261, Percent_Identity=32.9501915708812, Blast_Score=131, Evalue=7e-31, Organism=Caenorhabditis elegans, GI17537503, Length=290, Percent_Identity=30.6896551724138, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI193205216, Length=290, Percent_Identity=30.6896551724138, Blast_Score=119, Evalue=1e-27, Organism=Drosophila melanogaster, GI20129357, Length=296, Percent_Identity=28.7162162162162, Blast_Score=96, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32750; Mature: 32619
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIPFVREIEFEYGRVDQVSPLVRRVIANNPGPFTYTGTGVFIVGKGEVAVIDPGPDLAE CCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCEEEECCCCCHHH HFDALKAALAGETVTHVLVTHGHSDHSPLAGPLAEWAGCKTYAREAGIHTAKDELGSADD HHHHHHHHHHCCHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCC LRFTPDVKLRDGDVVSGPGWTIEAIFTPGHTANHTCFALREENACFTGDHVMGWSTTVVS CEECCCCEECCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCCEECCCCEECCCEEEEC PPDGDMSDYMESLEKIRVRGFETLWPTHGEAIRGQEFVNTFITEYAAHRRAREAAIIEQM CCCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRGRTNIPEMVSEMYADVDKRLHPAAAMSVLGHMIDLVRRGVARTPDSAPTTRSVFELA HCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC >Mature Secondary Structure AIPFVREIEFEYGRVDQVSPLVRRVIANNPGPFTYTGTGVFIVGKGEVAVIDPGPDLAE CCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCEEEECCCCCHHH HFDALKAALAGETVTHVLVTHGHSDHSPLAGPLAEWAGCKTYAREAGIHTAKDELGSADD HHHHHHHHHHCCHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCC LRFTPDVKLRDGDVVSGPGWTIEAIFTPGHTANHTCFALREENACFTGDHVMGWSTTVVS CEECCCCEECCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCCEECCCCEECCCEEEEC PPDGDMSDYMESLEKIRVRGFETLWPTHGEAIRGQEFVNTFITEYAAHRRAREAAIIEQM CCCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRGRTNIPEMVSEMYADVDKRLHPAAAMSVLGHMIDLVRRGVARTPDSAPTTRSVFELA HCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA