Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

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The map label for this gene is ycbL [C]

Identifier: 114798441

GI number: 114798441

Start: 3034637

End: 3035536

Strand: Reverse

Name: ycbL [C]

Synonym: HNE_2876

Alternate gene names: 114798441

Gene position: 3035536-3034637 (Counterclockwise)

Preceding gene: 114799472

Following gene: 114799455

Centisome position: 81.93

GC content: 62.33

Gene sequence:

>900_bases
ATGGCCATTCCTTTTGTCCGGGAAATTGAGTTCGAATACGGACGGGTTGATCAGGTCTCCCCTCTGGTCCGCCGTGTGAT
TGCCAACAATCCCGGCCCGTTCACCTATACCGGCACCGGCGTGTTCATTGTCGGCAAGGGCGAAGTGGCCGTGATCGATC
CGGGCCCGGATCTTGCTGAACATTTCGACGCGTTGAAGGCGGCGCTGGCGGGTGAAACCGTTACGCATGTTCTGGTCACG
CACGGGCATTCGGATCATTCGCCGCTGGCCGGACCTCTGGCGGAGTGGGCGGGCTGCAAAACCTATGCGCGCGAAGCCGG
TATCCATACCGCCAAGGACGAACTCGGCAGCGCGGATGACCTGCGCTTTACGCCGGACGTGAAGCTGCGCGACGGGGATG
TGGTCTCCGGTCCCGGCTGGACGATCGAGGCGATTTTTACGCCTGGCCACACCGCCAACCATACCTGCTTTGCGCTGCGC
GAAGAGAATGCCTGTTTCACCGGTGACCATGTCATGGGCTGGTCCACCACGGTTGTCTCCCCGCCTGACGGGGACATGAG
CGACTATATGGAAAGCCTCGAGAAGATCCGTGTGCGCGGATTTGAAACGCTGTGGCCGACCCATGGCGAGGCGATCCGTG
GCCAGGAATTCGTGAATACCTTCATCACCGAATACGCCGCCCATCGCCGGGCCCGCGAGGCGGCCATCATCGAGCAGATG
CGCCGGGGACGGACGAACATTCCGGAGATGGTTTCCGAAATGTATGCCGATGTCGACAAGCGCCTGCATCCGGCCGCTGC
GATGAGCGTGCTGGGCCACATGATTGATCTGGTCCGCCGCGGCGTGGCGCGCACGCCTGACAGCGCGCCGACGACACGGT
CGGTGTTCGAACTGGCCTGA

Upstream 100 bases:

>100_bases
GAAGCTGAGAGCGACCCGCCGCATGGCGCGTGCCTTTGCCGAGAAGTTTGCAACGAAGAAGCGTTGATCCGCCCACAACC
TTTTGGTGCGAGATAAACCC

Downstream 100 bases:

>100_bases
CCGGTCCTGGCCTGATCAGTCCTCGCGGCGCACCCGGAAGGCCAGGCCGCCATCGATCTTCATCTTGTAGCTGCCCAGCG
CCGCCTGATAGATTTCGGCG

Product: metallo-beta-lactamase family protein

Products: NA

Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Hydrolase; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase-Like; Hydroxyacylglutathione Hydrolase; Zn-Dependent Hydrolase Glyoxylase; Beta-Lactamase Family Protein; Beta-Lactamase-Like Protein; Beta-Lactamase; Zn-Dependent Hydrolase; Metallo-Beta-Lactamase Domain Protein; Hydrolase Protein; Zinc-Dependent Hydrolase; Hydrolase/Glyoxylase; Metallo-Beta-Lactamase Family Hydrolase; Nudix Hydrolase; NUDIX HydrolaseBeta-Lactamase-Like; Beta-Lactamase Class B; Zn-Dependent Hydrolase Including Glyoxylase-Like Protein; Glyoxalase II Family Protein; Beta-Lactamase-Like Hydrolase

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MAIPFVREIEFEYGRVDQVSPLVRRVIANNPGPFTYTGTGVFIVGKGEVAVIDPGPDLAEHFDALKAALAGETVTHVLVT
HGHSDHSPLAGPLAEWAGCKTYAREAGIHTAKDELGSADDLRFTPDVKLRDGDVVSGPGWTIEAIFTPGHTANHTCFALR
EENACFTGDHVMGWSTTVVSPPDGDMSDYMESLEKIRVRGFETLWPTHGEAIRGQEFVNTFITEYAAHRRAREAAIIEQM
RRGRTNIPEMVSEMYADVDKRLHPAAAMSVLGHMIDLVRRGVARTPDSAPTTRSVFELA

Sequences:

>Translated_299_residues
MAIPFVREIEFEYGRVDQVSPLVRRVIANNPGPFTYTGTGVFIVGKGEVAVIDPGPDLAEHFDALKAALAGETVTHVLVT
HGHSDHSPLAGPLAEWAGCKTYAREAGIHTAKDELGSADDLRFTPDVKLRDGDVVSGPGWTIEAIFTPGHTANHTCFALR
EENACFTGDHVMGWSTTVVSPPDGDMSDYMESLEKIRVRGFETLWPTHGEAIRGQEFVNTFITEYAAHRRAREAAIIEQM
RRGRTNIPEMVSEMYADVDKRLHPAAAMSVLGHMIDLVRRGVARTPDSAPTTRSVFELA
>Mature_298_residues
AIPFVREIEFEYGRVDQVSPLVRRVIANNPGPFTYTGTGVFIVGKGEVAVIDPGPDLAEHFDALKAALAGETVTHVLVTH
GHSDHSPLAGPLAEWAGCKTYAREAGIHTAKDELGSADDLRFTPDVKLRDGDVVSGPGWTIEAIFTPGHTANHTCFALRE
ENACFTGDHVMGWSTTVVSPPDGDMSDYMESLEKIRVRGFETLWPTHGEAIRGQEFVNTFITEYAAHRRAREAAIIEQMR
RGRTNIPEMVSEMYADVDKRLHPAAAMSVLGHMIDLVRRGVARTPDSAPTTRSVFELA

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI7705793, Length=261, Percent_Identity=32.9501915708812, Blast_Score=131, Evalue=7e-31,
Organism=Caenorhabditis elegans, GI17537503, Length=290, Percent_Identity=30.6896551724138, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI193205216, Length=290, Percent_Identity=30.6896551724138, Blast_Score=119, Evalue=1e-27,
Organism=Drosophila melanogaster, GI20129357, Length=296, Percent_Identity=28.7162162162162, Blast_Score=96, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32750; Mature: 32619

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIPFVREIEFEYGRVDQVSPLVRRVIANNPGPFTYTGTGVFIVGKGEVAVIDPGPDLAE
CCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCEEEECCCCCHHH
HFDALKAALAGETVTHVLVTHGHSDHSPLAGPLAEWAGCKTYAREAGIHTAKDELGSADD
HHHHHHHHHHCCHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCC
LRFTPDVKLRDGDVVSGPGWTIEAIFTPGHTANHTCFALREENACFTGDHVMGWSTTVVS
CEECCCCEECCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCCEECCCCEECCCEEEEC
PPDGDMSDYMESLEKIRVRGFETLWPTHGEAIRGQEFVNTFITEYAAHRRAREAAIIEQM
CCCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRGRTNIPEMVSEMYADVDKRLHPAAAMSVLGHMIDLVRRGVARTPDSAPTTRSVFELA
HCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
>Mature Secondary Structure 
AIPFVREIEFEYGRVDQVSPLVRRVIANNPGPFTYTGTGVFIVGKGEVAVIDPGPDLAE
CCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCEEEECCCCCHHH
HFDALKAALAGETVTHVLVTHGHSDHSPLAGPLAEWAGCKTYAREAGIHTAKDELGSADD
HHHHHHHHHHCCHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCC
LRFTPDVKLRDGDVVSGPGWTIEAIFTPGHTANHTCFALREENACFTGDHVMGWSTTVVS
CEECCCCEECCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCCEECCCCEECCCEEEEC
PPDGDMSDYMESLEKIRVRGFETLWPTHGEAIRGQEFVNTFITEYAAHRRAREAAIIEQM
CCCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRGRTNIPEMVSEMYADVDKRLHPAAAMSVLGHMIDLVRRGVARTPDSAPTTRSVFELA
HCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA