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The map label for this gene is ybeY [C]

Identifier: 114798379

GI number: 114798379

Start: 94031

End: 94483

Strand: Direct

Name: ybeY [C]

Synonym: HNE_0105

Alternate gene names: 114798379

Gene position: 94031-94483 (Clockwise)

Preceding gene: 114800486

Following gene: 114798310

Centisome position: 2.54

GC content: 55.19

Gene sequence:

>453_bases
ATGATTAGTTTCGACCTCATCGTCGAGGATGACAGTTGGGCGGCGCTCGGAGACCTCGAAGCCCTTTGCCGGAAAGCCTT
TGATGCTGCTGAATATGTTGCGCCGGTAGAAGAGGGCAATATTGCCCTGTTGCTCGCCGATAATCACGTCCTGCACCAGC
TCAACCTGGATTTCCGCAGCAAGGACAAGCCGACGGATGTGCTGTCTTTTCCCTCGCTTCCGATGGACCGGCCGTTTCTC
GGGGACATTGCTGTCGCTTGGGGTGTGTCTGCATCCGACGCAAAAATCCAGGGGAAGCCCCTCGACGCCCACCTTGTTCA
TCTGCTGATTCATGGCTACCTGCACCTGCTCGGATTCGATCATGAGACGGACGATGAGGCTGCAGAAATGGAAGCGCTGG
AGATAAAGGCGCTTGCTTCCCTCGATATTGCTAATCCATACCGGAATGACTGA

Upstream 100 bases:

>100_bases
TCCGTTCACAGGCTGACGGCCGCCGATGTTGTGCGTCACGGCCTCGTCAGCCGCATCATTGATGCCTATGCGGCATCGGG
GGAGAGCTGAGGCCCCCGCC

Downstream 100 bases:

>100_bases
TTGAAATGAGCGACTCAGACCCCTCCGACGCCGGCCCGTCCGGCCGATTGCGAAGCCTCTTCGGGTTCCGCAAGAAAACG
CCCGAGCCTGCGACGGCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MISFDLIVEDDSWAALGDLEALCRKAFDAAEYVAPVEEGNIALLLADNHVLHQLNLDFRSKDKPTDVLSFPSLPMDRPFL
GDIAVAWGVSASDAKIQGKPLDAHLVHLLIHGYLHLLGFDHETDDEAAEMEALEIKALASLDIANPYRND

Sequences:

>Translated_150_residues
MISFDLIVEDDSWAALGDLEALCRKAFDAAEYVAPVEEGNIALLLADNHVLHQLNLDFRSKDKPTDVLSFPSLPMDRPFL
GDIAVAWGVSASDAKIQGKPLDAHLVHLLIHGYLHLLGFDHETDDEAAEMEALEIKALASLDIANPYRND
>Mature_150_residues
MISFDLIVEDDSWAALGDLEALCRKAFDAAEYVAPVEEGNIALLLADNHVLHQLNLDFRSKDKPTDVLSFPSLPMDRPFL
GDIAVAWGVSASDAKIQGKPLDAHLVHLLIHGYLHLLGFDHETDDEAAEMEALEIKALASLDIANPYRND

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=114, Percent_Identity=48.2456140350877, Blast_Score=93, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_HYPNA (Q0C604)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_758839.1
- ProteinModelPortal:   Q0C604
- SMR:   Q0C604
- STRING:   Q0C604
- GeneID:   4288371
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_0105
- NMPDR:   fig|228405.5.peg.103
- TIGR:   HNE_0105
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   ELAIMLT
- PhylomeDB:   Q0C604
- BioCyc:   HNEP81032:HNE_0105-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16504; Mature: 16504

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISFDLIVEDDSWAALGDLEALCRKAFDAAEYVAPVEEGNIALLLADNHVLHQLNLDFRS
CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCC
KDKPTDVLSFPSLPMDRPFLGDIAVAWGVSASDAKIQGKPLDAHLVHLLIHGYLHLLGFD
CCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCC
HETDDEAAEMEALEIKALASLDIANPYRND
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MISFDLIVEDDSWAALGDLEALCRKAFDAAEYVAPVEEGNIALLLADNHVLHQLNLDFRS
CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCC
KDKPTDVLSFPSLPMDRPFLGDIAVAWGVSASDAKIQGKPLDAHLVHLLIHGYLHLLGFD
CCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCC
HETDDEAAEMEALEIKALASLDIANPYRND
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA