| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is pifA [H]
Identifier: 114798367
GI number: 114798367
Start: 3136988
End: 3139171
Strand: Direct
Name: pifA [H]
Synonym: HNE_2979
Alternate gene names: 114798367
Gene position: 3136988-3139171 (Clockwise)
Preceding gene: 114800460
Following gene: 114797200
Centisome position: 84.67
GC content: 46.11
Gene sequence:
>2184_bases ATGGTGAGCGACGATAGAAATTTTGACGCAGATCGCCCTCTGGGACCAGATGGTGTGGATTATCTGGGAACTGATGATTT AGCTCTTCGCTTAAGCACAATTTTGCGAGATCGGAGCCTAAAAGACGGCTTTGTAATAGGAATCGAAGGTCGCTGGGGCG CAGGCAAATCAACGCTGATAAAGAAAACCATCGGACACCTTAACGCGTCCGAAAAACCCCCCATTATCGTTCAGTTCAAT CCCTGGCTTGTTGGAGATAAGCGGGACCTAATCGCAGAATTTTTTGTCGGACTTGATGAGGCGCTATCTCAATACGCTTT GAAAAGTGGGCTCAAGGGCAAAACTAAAAAAACTGTAGAGTCGGCAACGGAAGCTCTCAAGAAATACTCTAAGCATTTGG CGACGGGCGCTCAATTCCTCTCGGCCGCCTCCGTGATTATTCCTAATCTACAACCAATTGCAAAATTTCTCGACGAGACA GCAAGTGTCCTCGACGGCGCAATTGGCACTAAATCCCTACACGAACAAAAATCTGAAATTGAAGCGGCACTTAGAGATTT TAAAGATCCGATCATCGTTTTTATCGACGACACAGAGCGGCTTGATCCCCCAGAGATAATGGAAATTCTTCGCCTTCTCC GGGCGGTTGGCGACCTGCCAAACATCATCTACGTGGTCTGCTACGACAGAAAAGCACTTGTAAGGAGCATCGGTATAGCG CTTGCCGGAAATGGTCACGATGAAACAGGCGAGGCATACATTGAAAAAATTGTCCAGGCCACCGTGACAATTCCCCGACC AGAGGACTTTGCTCTAAGGCGTTGGTTTTTACGAGAGGTCCAGTCTATTTGCTCCCCCCAAACAAGCGAAATCAATGAGC GACTTCAGGAAATAGTAGACTCAGAAGGTGGCGGGATTTTAGAAACGCCAAGAGATGTAATTCGCACACTGAATAGCATA AAGCTTGTTTGGCCTGTCATTCATGATTTTGTGGACATTCCGGATTTGGTTTGGCTTCATTTAATCAAACTAAAGCGACC GAAACTCTATGACTGGGTTGAAAACTATTTAAATGGATTTGCTGAAGTCGCGCGCGGGACCGCGTCGGCTTCTGACGGCA TAGCGCAGGCCAATTCGCTTTTTGAAATTATCACGCAAGACTATCCACCGAACAGCATAAGGTTTTTTAGACTGCAAGAA ATTATTCCGGGAATAGGCCGCACCCATATCGAGAACGGTGAGCAAGGCTGGACCGTCTTTGATGTCAACCGCAACAATAT AGATGAACTGACCCAAAATCGCCGGCTGGGCAGCCCCCACTACTATCGATACTATTTTGCATTGGGACAAAACAGCGGAT TCATTCCTGGTGCGGATTTAAATAAGGCTAAATCTGAGGTTATTTCAAAGTCCAGTGAGTTCGTTGATCGATTGCGGGTC AGTTCAAAACAACGATTTGCAGATGGTGAGCTACACTTCACGGTACTGTTGGATTGCATCAGATCAATTGTCCCAAAACT TAGTCAGGAACAATCAAAATTTCTACTCCAGGTCATTGCTGACAATACTGATCTGGCTGTCCGGAATACCGTTGACCCCT TCTTCAACGGCAGGAGGTCATTATTCGTTCCTCTGGGTATCTTAAAAGAAATTGTCGTACACGAACCAAATCGGGCAATA TGGCTCACGGATATTGTCGACACGGCTCAGTCGTTGTGCTTCCTCGCATTTTTTATCAGGTATATTTCAAACAATCACTC TTACGAATTCAACTTATCTGACGATACTGCAGCAGATTTGACGCAACGCCTGAGTAGGCGAGTATCTACTTTGGGAGAAA GTTTGTGGGATCACCCAAATCCAGAATTTGTGTTCCGGGTCGCGCTTCAGAATGCAACTCAGGAGACTGAGACTCGAAGC AGATTGGAAGCATTCTATTCGGACGACTCCAATCTCATTCGATTGATTGGACACGAGGATGTTAAAGGACAAGTTGTCAC CTCAAAACGAGAAAAGTTTCGCCCGCTTATTTTGAAATCGATCGCTGAAATTTGGGGTGACGAGGAAATACCTAAACGGG TACTGAGCATCGTCAAAAACAGAGACAAATTCCCTGCGGAACTACAACCCCACATAGACATCATTGTATCTGGTCTGGCA GATGCAGACGCCGCAAACAGATAG
Upstream 100 bases:
>100_bases AGAGAAGGGCGTCAATTGGGCTAGTAAGCTTACCGCTCTTATTGCAGAGTGAATCAGTTTAAAATAGAAAAAATTTGGCA AGCGATTGAATCCGGAGCCT
Downstream 100 bases:
>100_bases AATGGAGCTTAGATTATTTCCTCCCGATATCCCCGTTTCTTGCGGCGGTGAGGGGAGCATGAGCCGAATGGGCTTAGGGC GTGGCCGCTTCCGGAACCGC
Product: KAP P-loop domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 727; Mature: 727
Protein sequence:
>727_residues MVSDDRNFDADRPLGPDGVDYLGTDDLALRLSTILRDRSLKDGFVIGIEGRWGAGKSTLIKKTIGHLNASEKPPIIVQFN PWLVGDKRDLIAEFFVGLDEALSQYALKSGLKGKTKKTVESATEALKKYSKHLATGAQFLSAASVIIPNLQPIAKFLDET ASVLDGAIGTKSLHEQKSEIEAALRDFKDPIIVFIDDTERLDPPEIMEILRLLRAVGDLPNIIYVVCYDRKALVRSIGIA LAGNGHDETGEAYIEKIVQATVTIPRPEDFALRRWFLREVQSICSPQTSEINERLQEIVDSEGGGILETPRDVIRTLNSI KLVWPVIHDFVDIPDLVWLHLIKLKRPKLYDWVENYLNGFAEVARGTASASDGIAQANSLFEIITQDYPPNSIRFFRLQE IIPGIGRTHIENGEQGWTVFDVNRNNIDELTQNRRLGSPHYYRYYFALGQNSGFIPGADLNKAKSEVISKSSEFVDRLRV SSKQRFADGELHFTVLLDCIRSIVPKLSQEQSKFLLQVIADNTDLAVRNTVDPFFNGRRSLFVPLGILKEIVVHEPNRAI WLTDIVDTAQSLCFLAFFIRYISNNHSYEFNLSDDTAADLTQRLSRRVSTLGESLWDHPNPEFVFRVALQNATQETETRS RLEAFYSDDSNLIRLIGHEDVKGQVVTSKREKFRPLILKSIAEIWGDEEIPKRVLSIVKNRDKFPAELQPHIDIIVSGLA DADAANR
Sequences:
>Translated_727_residues MVSDDRNFDADRPLGPDGVDYLGTDDLALRLSTILRDRSLKDGFVIGIEGRWGAGKSTLIKKTIGHLNASEKPPIIVQFN PWLVGDKRDLIAEFFVGLDEALSQYALKSGLKGKTKKTVESATEALKKYSKHLATGAQFLSAASVIIPNLQPIAKFLDET ASVLDGAIGTKSLHEQKSEIEAALRDFKDPIIVFIDDTERLDPPEIMEILRLLRAVGDLPNIIYVVCYDRKALVRSIGIA LAGNGHDETGEAYIEKIVQATVTIPRPEDFALRRWFLREVQSICSPQTSEINERLQEIVDSEGGGILETPRDVIRTLNSI KLVWPVIHDFVDIPDLVWLHLIKLKRPKLYDWVENYLNGFAEVARGTASASDGIAQANSLFEIITQDYPPNSIRFFRLQE IIPGIGRTHIENGEQGWTVFDVNRNNIDELTQNRRLGSPHYYRYYFALGQNSGFIPGADLNKAKSEVISKSSEFVDRLRV SSKQRFADGELHFTVLLDCIRSIVPKLSQEQSKFLLQVIADNTDLAVRNTVDPFFNGRRSLFVPLGILKEIVVHEPNRAI WLTDIVDTAQSLCFLAFFIRYISNNHSYEFNLSDDTAADLTQRLSRRVSTLGESLWDHPNPEFVFRVALQNATQETETRS RLEAFYSDDSNLIRLIGHEDVKGQVVTSKREKFRPLILKSIAEIWGDEEIPKRVLSIVKNRDKFPAELQPHIDIIVSGLA DADAANR >Mature_727_residues MVSDDRNFDADRPLGPDGVDYLGTDDLALRLSTILRDRSLKDGFVIGIEGRWGAGKSTLIKKTIGHLNASEKPPIIVQFN PWLVGDKRDLIAEFFVGLDEALSQYALKSGLKGKTKKTVESATEALKKYSKHLATGAQFLSAASVIIPNLQPIAKFLDET ASVLDGAIGTKSLHEQKSEIEAALRDFKDPIIVFIDDTERLDPPEIMEILRLLRAVGDLPNIIYVVCYDRKALVRSIGIA LAGNGHDETGEAYIEKIVQATVTIPRPEDFALRRWFLREVQSICSPQTSEINERLQEIVDSEGGGILETPRDVIRTLNSI KLVWPVIHDFVDIPDLVWLHLIKLKRPKLYDWVENYLNGFAEVARGTASASDGIAQANSLFEIITQDYPPNSIRFFRLQE IIPGIGRTHIENGEQGWTVFDVNRNNIDELTQNRRLGSPHYYRYYFALGQNSGFIPGADLNKAKSEVISKSSEFVDRLRV SSKQRFADGELHFTVLLDCIRSIVPKLSQEQSKFLLQVIADNTDLAVRNTVDPFFNGRRSLFVPLGILKEIVVHEPNRAI WLTDIVDTAQSLCFLAFFIRYISNNHSYEFNLSDDTAADLTQRLSRRVSTLGESLWDHPNPEFVFRVALQNATQETETRS RLEAFYSDDSNLIRLIGHEDVKGQVVTSKREKFRPLILKSIAEIWGDEEIPKRVLSIVKNRDKFPAELQPHIDIIVSGLA DADAANR
Specific function: Responsible for the exclusion of phage T7 by plasmid F. Growth of bacteriophage T7 is inhibited in cells of E.coli that carries the plasmid F [H]
COG id: COG4928
COG function: function code R; Predicted P-loop ATPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 KAP NTPase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011646 [H]
Pfam domain/function: PF07693 KAP_NTPase [H]
EC number: NA
Molecular weight: Translated: 81861; Mature: 81861
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSDDRNFDADRPLGPDGVDYLGTDDLALRLSTILRDRSLKDGFVIGIEGRWGAGKSTLI CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH KKTIGHLNASEKPPIIVQFNPWLVGDKRDLIAEFFVGLDEALSQYALKSGLKGKTKKTVE HHHHHHCCCCCCCCEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH SATEALKKYSKHLATGAQFLSAASVIIPNLQPIAKFLDETASVLDGAIGTKSLHEQKSEI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH EAALRDFKDPIIVFIDDTERLDPPEIMEILRLLRAVGDLPNIIYVVCYDRKALVRSIGIA HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCEE LAGNGHDETGEAYIEKIVQATVTIPRPEDFALRRWFLREVQSICSPQTSEINERLQEIVD EECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC SEGGGILETPRDVIRTLNSIKLVWPVIHDFVDIPDLVWLHLIKLKRPKLYDWVENYLNGF CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHH AEVARGTASASDGIAQANSLFEIITQDYPPNSIRFFRLQEIIPGIGRTHIENGEQGWTVF HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCHHCCCCCCCCEEE DVNRNNIDELTQNRRLGSPHYYRYYFALGQNSGFIPGADLNKAKSEVISKSSEFVDRLRV ECCCCCHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH SSKQRFADGELHFTVLLDCIRSIVPKLSQEQSKFLLQVIADNTDLAVRNTVDPFFNGRRS HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHCCCCE LFVPLGILKEIVVHEPNRAIWLTDIVDTAQSLCFLAFFIRYISNNHSYEFNLSDDTAADL EEEHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH TQRLSRRVSTLGESLWDHPNPEFVFRVALQNATQETETRSRLEAFYSDDSNLIRLIGHED HHHHHHHHHHHHHHHHCCCCHHHEEHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEECCCC VKGQVVTSKREKFRPLILKSIAEIWGDEEIPKRVLSIVKNRDKFPAELQPHIDIIVSGLA CCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH DADAANR CCCCCCC >Mature Secondary Structure MVSDDRNFDADRPLGPDGVDYLGTDDLALRLSTILRDRSLKDGFVIGIEGRWGAGKSTLI CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH KKTIGHLNASEKPPIIVQFNPWLVGDKRDLIAEFFVGLDEALSQYALKSGLKGKTKKTVE HHHHHHCCCCCCCCEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH SATEALKKYSKHLATGAQFLSAASVIIPNLQPIAKFLDETASVLDGAIGTKSLHEQKSEI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH EAALRDFKDPIIVFIDDTERLDPPEIMEILRLLRAVGDLPNIIYVVCYDRKALVRSIGIA HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCEE LAGNGHDETGEAYIEKIVQATVTIPRPEDFALRRWFLREVQSICSPQTSEINERLQEIVD EECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC SEGGGILETPRDVIRTLNSIKLVWPVIHDFVDIPDLVWLHLIKLKRPKLYDWVENYLNGF CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHH AEVARGTASASDGIAQANSLFEIITQDYPPNSIRFFRLQEIIPGIGRTHIENGEQGWTVF HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCHHCCCCCCCCEEE DVNRNNIDELTQNRRLGSPHYYRYYFALGQNSGFIPGADLNKAKSEVISKSSEFVDRLRV ECCCCCHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH SSKQRFADGELHFTVLLDCIRSIVPKLSQEQSKFLLQVIADNTDLAVRNTVDPFFNGRRS HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHCCCCE LFVPLGILKEIVVHEPNRAIWLTDIVDTAQSLCFLAFFIRYISNNHSYEFNLSDDTAADL EEEHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH TQRLSRRVSTLGESLWDHPNPEFVFRVALQNATQETETRSRLEAFYSDDSNLIRLIGHED HHHHHHHHHHHHHHHHCCCCHHHEEHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEECCCC VKGQVVTSKREKFRPLILKSIAEIWGDEEIPKRVLSIVKNRDKFPAELQPHIDIIVSGLA CCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH DADAANR CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 5283385 [H]