Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

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The map label for this gene is 114798275

Identifier: 114798275

GI number: 114798275

Start: 1274797

End: 1276161

Strand: Reverse

Name: 114798275

Synonym: HNE_1251

Alternate gene names: NA

Gene position: 1276161-1274797 (Counterclockwise)

Preceding gene: 114797293

Following gene: 114800419

Centisome position: 34.44

GC content: 64.1

Gene sequence:

>1365_bases
ATGGCTGACGGACTGCTGGACAGCGCGCTGGGCGCCGGGGTATCCCCGGAAGACGTAAAGGCAATCGCCGATGCGATCGA
CATGGATGAGCTGACGAAACTCATCCTGGACCTCGCCAACATCTACAGCCCGTCAACCGGCGAGGCGGAGGCCTCCGCTT
TCGTCCATGACTGGATGGACCGCGAAGGTTTCCGCCCGCTCAGCGTCGGCGCCGTGCCCCATCGCCAGAATGTCATCGGC
ACCTATGGCGGCAACGGCCCGGGAAAAAACCTCCTCTTCACGGCCCATCTCGACACCGAGAGTGAGCCCGCCGATCCAGT
CATCCGCGCCAAGACCCGCCGCCCCGAAAGCGTGGCAAACCGCGAATGGAAAGAGTGCTGGCTGGAGGATGGCAAATTCT
ATGGCTACGCCGTCGCCAATGATCGCGGCCCGATGAGCTGTATGCTGATGGCCGCCAAGGCGCTGAAGAAAGCCGGTTAT
GAACTCGCCGGCCGCATGTATCTCACAGCCTGCCCCGGCGAATGCGGCCCCGAGCCCATCGAAGAGCATGGCGGCATCGA
CAATATGGGCAAGGAAATCGGCGCCCATTACATGTTCCACCATGGCGGCGTCGCGCCCGATTTCGCCATCGCCGCCGAGG
GCACGGATTTCGGCGTCACCTGGCTTGGCTGCGGCGGCGCGATGTTCCGCATCCGCCTCTATGGCCAGTCGATTTTCCGC
CCGCTCCTCAAGGCGCCCAAAGCCACCGCCGACCATCCCAGCTCGATCTACAAGCTCGGCCCGGTCATCGAGGCGCTCCA
CGCCTGGTCGCTCGATTACGAGACCAGCAACGCCTACCACGCCAAGGGCGGCTCCTCCCTGCCCAAGGCCACGATCAGCT
GCGTCCAGGCCGGCTTCCCCCACAGCGGCGGCACCGAAGTCGCCGCCATCTATATCAGCTGCGACCTTAGCCCGAAGCAG
AAGGCCGCCCAGGTCCTGCACGAACTCGAAGCCGTCATGCGTGCCCTGCCCGGCATCGAGTTTGACATCGAGCCGGTGAA
CGTCAGCCATGGCTACGAAGCCGACGACACCGAAGTCACCCCCCTCGTCGCCGGTGTCGATGTGGCGGTTCAGGCCGTGC
TGGATCACCCCGTCGAAATCGCCAAGCCGGTCTATTCCAGCATGTGGCGCGACCATAACGTGTTCAACATGCACCGCGTG
CCCGCCATCACCTTCGGCCCCGTCCGCTGGCGCCCGACGCCGGAAGACTTCTTCAAATGCACGCTGATGTACGCCCTCAC
AGCGCTGACGATCTGCGGCCGCATGGACGGCGAAGTCGAGAAACGCACCGGGCGCACGGTTTATGGCGACAACCCGTTCG
ATTGA

Upstream 100 bases:

>100_bases
AAATGTTCGGAGACATTCTCCCCAAGCTGCGCCAGCGCTTTCCCGCCCAGAACCACGAACCCGCATAATCAGATAACAGA
ATAAGGGAGAGGGAAACCTC

Downstream 100 bases:

>100_bases
GCCGTTTGTCGAACAGCCCGGTCAGGCCGCTTTCTTGTCAGAGTCCAGATAGGTCATCAACATATCCTGAAAGACCACCT
TCATCTGCTCGATATACTCG

Product: M20/M25/M40 family peptidase

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 454; Mature: 453

Protein sequence:

>454_residues
MADGLLDSALGAGVSPEDVKAIADAIDMDELTKLILDLANIYSPSTGEAEASAFVHDWMDREGFRPLSVGAVPHRQNVIG
TYGGNGPGKNLLFTAHLDTESEPADPVIRAKTRRPESVANREWKECWLEDGKFYGYAVANDRGPMSCMLMAAKALKKAGY
ELAGRMYLTACPGECGPEPIEEHGGIDNMGKEIGAHYMFHHGGVAPDFAIAAEGTDFGVTWLGCGGAMFRIRLYGQSIFR
PLLKAPKATADHPSSIYKLGPVIEALHAWSLDYETSNAYHAKGGSSLPKATISCVQAGFPHSGGTEVAAIYISCDLSPKQ
KAAQVLHELEAVMRALPGIEFDIEPVNVSHGYEADDTEVTPLVAGVDVAVQAVLDHPVEIAKPVYSSMWRDHNVFNMHRV
PAITFGPVRWRPTPEDFFKCTLMYALTALTICGRMDGEVEKRTGRTVYGDNPFD

Sequences:

>Translated_454_residues
MADGLLDSALGAGVSPEDVKAIADAIDMDELTKLILDLANIYSPSTGEAEASAFVHDWMDREGFRPLSVGAVPHRQNVIG
TYGGNGPGKNLLFTAHLDTESEPADPVIRAKTRRPESVANREWKECWLEDGKFYGYAVANDRGPMSCMLMAAKALKKAGY
ELAGRMYLTACPGECGPEPIEEHGGIDNMGKEIGAHYMFHHGGVAPDFAIAAEGTDFGVTWLGCGGAMFRIRLYGQSIFR
PLLKAPKATADHPSSIYKLGPVIEALHAWSLDYETSNAYHAKGGSSLPKATISCVQAGFPHSGGTEVAAIYISCDLSPKQ
KAAQVLHELEAVMRALPGIEFDIEPVNVSHGYEADDTEVTPLVAGVDVAVQAVLDHPVEIAKPVYSSMWRDHNVFNMHRV
PAITFGPVRWRPTPEDFFKCTLMYALTALTICGRMDGEVEKRTGRTVYGDNPFD
>Mature_453_residues
ADGLLDSALGAGVSPEDVKAIADAIDMDELTKLILDLANIYSPSTGEAEASAFVHDWMDREGFRPLSVGAVPHRQNVIGT
YGGNGPGKNLLFTAHLDTESEPADPVIRAKTRRPESVANREWKECWLEDGKFYGYAVANDRGPMSCMLMAAKALKKAGYE
LAGRMYLTACPGECGPEPIEEHGGIDNMGKEIGAHYMFHHGGVAPDFAIAAEGTDFGVTWLGCGGAMFRIRLYGQSIFRP
LLKAPKATADHPSSIYKLGPVIEALHAWSLDYETSNAYHAKGGSSLPKATISCVQAGFPHSGGTEVAAIYISCDLSPKQK
AAQVLHELEAVMRALPGIEFDIEPVNVSHGYEADDTEVTPLVAGVDVAVQAVLDHPVEIAKPVYSSMWRDHNVFNMHRVP
AITFGPVRWRPTPEDFFKCTLMYALTALTICGRMDGEVEKRTGRTVYGDNPFD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49187; Mature: 49056

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADGLLDSALGAGVSPEDVKAIADAIDMDELTKLILDLANIYSPSTGEAEASAFVHDWMD
CCCCHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
REGFRPLSVGAVPHRQNVIGTYGGNGPGKNLLFTAHLDTESEPADPVIRAKTRRPESVAN
CCCCCCEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCHHHHH
REWKECWLEDGKFYGYAVANDRGPMSCMLMAAKALKKAGYELAGRMYLTACPGECGPEPI
HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCH
EEHGGIDNMGKEIGAHYMFHHGGVAPDFAIAAEGTDFGVTWLGCGGAMFRIRLYGQSIFR
HHCCCCCHHHHHHHHHHEEECCCCCCCCEEEECCCCCCEEEEECCCEEEEEEEHHHHHHH
PLLKAPKATADHPSSIYKLGPVIEALHAWSLDYETSNAYHAKGGSSLPKATISCVQAGFP
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHCCCC
HSGGTEVAAIYISCDLSPKQKAAQVLHELEAVMRALPGIEFDIEPVNVSHGYEADDTEVT
CCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
PLVAGVDVAVQAVLDHPVEIAKPVYSSMWRDHNVFNMHRVPAITFGPVRWRPTPEDFFKC
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCEEEECCEECCCCHHHHHHH
TLMYALTALTICGRMDGEVEKRTGRTVYGDNPFD
HHHHHHHHHHHHHCCCCCHHHHCCCEECCCCCCC
>Mature Secondary Structure 
ADGLLDSALGAGVSPEDVKAIADAIDMDELTKLILDLANIYSPSTGEAEASAFVHDWMD
CCCHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
REGFRPLSVGAVPHRQNVIGTYGGNGPGKNLLFTAHLDTESEPADPVIRAKTRRPESVAN
CCCCCCEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCHHHHH
REWKECWLEDGKFYGYAVANDRGPMSCMLMAAKALKKAGYELAGRMYLTACPGECGPEPI
HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCH
EEHGGIDNMGKEIGAHYMFHHGGVAPDFAIAAEGTDFGVTWLGCGGAMFRIRLYGQSIFR
HHCCCCCHHHHHHHHHHEEECCCCCCCCEEEECCCCCCEEEEECCCEEEEEEEHHHHHHH
PLLKAPKATADHPSSIYKLGPVIEALHAWSLDYETSNAYHAKGGSSLPKATISCVQAGFP
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHCCCC
HSGGTEVAAIYISCDLSPKQKAAQVLHELEAVMRALPGIEFDIEPVNVSHGYEADDTEVT
CCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
PLVAGVDVAVQAVLDHPVEIAKPVYSSMWRDHNVFNMHRVPAITFGPVRWRPTPEDFFKC
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCEEEECCEECCCCHHHHHHH
TLMYALTALTICGRMDGEVEKRTGRTVYGDNPFD
HHHHHHHHHHHHHCCCCCHHHHCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA