| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is fyuA [H]
Identifier: 114797811
GI number: 114797811
Start: 1495892
End: 1498114
Strand: Direct
Name: fyuA [H]
Synonym: HNE_1470
Alternate gene names: 114797811
Gene position: 1495892-1498114 (Clockwise)
Preceding gene: 114799401
Following gene: 114797255
Centisome position: 40.37
GC content: 59.56
Gene sequence:
>2223_bases ATGAAACCACTTTCGATCCGTCTTGCGGCGGGCGCTTGTTCACTTGGCGTGATGGCATTCTGCGTGGCCACAGCCCATGC GCAGGAGACGATGGGGCAGGCGAGCGGGGAGACCGCTGCGGCCGCGGAAGCATCCCAGGAGAGCGCGCGGACGCTCGGCA CCGTGACAGTAACCGCGCAACGCCGCAGCGAGAGCCTGCAGGACGTCCCCGTCGTGGTAACCGTTTTTGGCGCTGATGAA ATTGCGGCAGCGCGCATTCAGCAGATCGACGATATTGTGACGCGCACGCCGGGGCTCAGTTTTGACGCGTTTCCCGCCTC CCAGCCGCGCCTTTATATTCGTGGTATCGGCTCAGGCGACCGCGGCGCGTCGGGTGATCCGAGCTCGGCCGTATTTCTTG ATGAAGTCTATCTGGGCCGGCCTTCGGCTGTGGCCTTTGATGCGTTCGATGTCGAGCGCATCGAAGTGCTCAAGGGGCCA CAAGGCACCCTGTACGGACGAAATGTCGTCGGCGGCGCCATCAATGTGATCTCGAAACGGCCGGTGCTTGACAGTTTCGG GGCGGGCGCAAGTGCGACGGCCGGCAATTACGGTCGGCTGGACGGTGCAGCCTTCCTGAACGCACCGGTGGCTGGCAACA CTGGTGCAGTGCGGGTCAGCGGCTCTTATCGCTCGAATGACGGCTATGTGGAAAACCCGTTCCTCGGCCGGGATGTCGAC GACCAGGAAACGCTCAGCGGCCGCCTGCAATACTATGCCGAGCCGACCGACAGCCTGCGGATGCATATCACCCTCGACGG AACACGCGACCGTGCCCTGGGTACGGCCAACCATGTCCTCGAGCTTGACGAAACTGATCCGCTTTCAAACTTCTATGCCC AGAATTTCGATCCCGATGTGACCTATGGCTCCGATCCGGGCTTCATGGAGCGCGATACATGGGGCGCGCGCGGCGAAGTA GCTTATGACTTCAGTTTTGCAACGGTGACGGCGCTGCTTTCCTACCGCGATCTGGACTATGGCTTCGGCTATGATTTTGA CGGCGGCAATCCGGACCCCACGTCGCCGGGCTTCAATGCCATCAATATCAGCGGAGGAAATGAAGAAACGGCAGAGCTTT CCAGCCAGGAACTGCGCTTTTCATCGCTTCCTGACAGTCCGGTCACCTGGGTTGTGGGGCTCTATCGCTACAATCAGGAT GTGCTGCGCACGGACAGTCTGATCCTGAATGCTGACGTGATTGCTCCCATCGAGCTGTTCGATGCGTTTGTCGCTGATGC CGAACTCGACAGCCACGCCGTGTTCGGGGACGTGTCGTTGCCTGTGACGGATAAGCTGACGGTGTTCGGCGGCCTGCGCT ATTCCAGGGACGAGAAGACGCAGCGGGTTTTCAACACCGACAGCAACGTGCCTTTGCGGGCGGACGACCTGTTTGATGCA ACCGCTTCGGCCGATTTTGATGACCTGACCTATCGCGCGGGCCTGGAATATCAGCTGACACCCGACCACATGGCCTATGC CAGCGTGTCGCGCGGCTTCAAGAGCGGCGGGTTCAACGGTGAGCCTTCAGATGCTGCGGCAGCCGTCACCCCCTTCGACC CGGAAGTGGCTGTGCAGTATGAGGCCGGCCATAAGAGCCTGTTTCTCGATGGCACCCTCATCTGGAACAATTCGGTGTTC TATGTCGACTACACCGATCTGCAGACAACACAGACCAATAATGGCGTCCGCATCATCACCAATGCCGGCGAAGCGCATAT CCAGGGCTACGAGACCCAGCTGCAGGTGAGCCCTGCGACGAACTTCAACCTGGCCGTGGCGTATGCGTATACCGACGCGG TGTTCGACGAGTTTGTCGAAGACGGCGTGGATTATTCGGGCAATCAGATTTCCAGGTCACCAAAACACAAGGTGACCGTG TCGCCTTCCTACACGCTGGCTCTGGCGAATGGTCCGGATCTGACTTTTGCAGTGGATTATCAGTACACAAGCAAGATTTT CGATGACAACAACAACCAGCCTCCTGAACTTCGGGACGCGACGAGCTTCGTGGATGCACGGGTCGTTCTGGATGGTCTCG GCAACGGGATGAGCGTGTCTCTCTGGGGCAAAAACCTTACCGACGAGCGGACACGCACGTTCCAGGGCGGCTTCCTGGGG GCTAACTTTGGTGCGTTCAATCCTCCCCGCACTTACGGCGTCACCCTGTCCTGGGACTACTGA
Upstream 100 bases:
>100_bases AAAATGTAAAATCCTTGCCACGTGAAAGACCGTTCCCTGGCCTATGCAAAGCGCGATGGCGGGCAACACGCCGTATGAAA TGTACCGGGAGGAGTACCCT
Downstream 100 bases:
>100_bases CATCCTGCGGGAGGCGCCTGACGCGCCTCCCGTTTTTTTTTGAGCTAATTCAGGTTTGATATGAGTGAACAGCTGACACT GCCCATTAAAGTGCTTGTGC
Product: putative TonB dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 740; Mature: 740
Protein sequence:
>740_residues MKPLSIRLAAGACSLGVMAFCVATAHAQETMGQASGETAAAAEASQESARTLGTVTVTAQRRSESLQDVPVVVTVFGADE IAAARIQQIDDIVTRTPGLSFDAFPASQPRLYIRGIGSGDRGASGDPSSAVFLDEVYLGRPSAVAFDAFDVERIEVLKGP QGTLYGRNVVGGAINVISKRPVLDSFGAGASATAGNYGRLDGAAFLNAPVAGNTGAVRVSGSYRSNDGYVENPFLGRDVD DQETLSGRLQYYAEPTDSLRMHITLDGTRDRALGTANHVLELDETDPLSNFYAQNFDPDVTYGSDPGFMERDTWGARGEV AYDFSFATVTALLSYRDLDYGFGYDFDGGNPDPTSPGFNAINISGGNEETAELSSQELRFSSLPDSPVTWVVGLYRYNQD VLRTDSLILNADVIAPIELFDAFVADAELDSHAVFGDVSLPVTDKLTVFGGLRYSRDEKTQRVFNTDSNVPLRADDLFDA TASADFDDLTYRAGLEYQLTPDHMAYASVSRGFKSGGFNGEPSDAAAAVTPFDPEVAVQYEAGHKSLFLDGTLIWNNSVF YVDYTDLQTTQTNNGVRIITNAGEAHIQGYETQLQVSPATNFNLAVAYAYTDAVFDEFVEDGVDYSGNQISRSPKHKVTV SPSYTLALANGPDLTFAVDYQYTSKIFDDNNNQPPELRDATSFVDARVVLDGLGNGMSVSLWGKNLTDERTRTFQGGFLG ANFGAFNPPRTYGVTLSWDY
Sequences:
>Translated_740_residues MKPLSIRLAAGACSLGVMAFCVATAHAQETMGQASGETAAAAEASQESARTLGTVTVTAQRRSESLQDVPVVVTVFGADE IAAARIQQIDDIVTRTPGLSFDAFPASQPRLYIRGIGSGDRGASGDPSSAVFLDEVYLGRPSAVAFDAFDVERIEVLKGP QGTLYGRNVVGGAINVISKRPVLDSFGAGASATAGNYGRLDGAAFLNAPVAGNTGAVRVSGSYRSNDGYVENPFLGRDVD DQETLSGRLQYYAEPTDSLRMHITLDGTRDRALGTANHVLELDETDPLSNFYAQNFDPDVTYGSDPGFMERDTWGARGEV AYDFSFATVTALLSYRDLDYGFGYDFDGGNPDPTSPGFNAINISGGNEETAELSSQELRFSSLPDSPVTWVVGLYRYNQD VLRTDSLILNADVIAPIELFDAFVADAELDSHAVFGDVSLPVTDKLTVFGGLRYSRDEKTQRVFNTDSNVPLRADDLFDA TASADFDDLTYRAGLEYQLTPDHMAYASVSRGFKSGGFNGEPSDAAAAVTPFDPEVAVQYEAGHKSLFLDGTLIWNNSVF YVDYTDLQTTQTNNGVRIITNAGEAHIQGYETQLQVSPATNFNLAVAYAYTDAVFDEFVEDGVDYSGNQISRSPKHKVTV SPSYTLALANGPDLTFAVDYQYTSKIFDDNNNQPPELRDATSFVDARVVLDGLGNGMSVSLWGKNLTDERTRTFQGGFLG ANFGAFNPPRTYGVTLSWDY >Mature_740_residues MKPLSIRLAAGACSLGVMAFCVATAHAQETMGQASGETAAAAEASQESARTLGTVTVTAQRRSESLQDVPVVVTVFGADE IAAARIQQIDDIVTRTPGLSFDAFPASQPRLYIRGIGSGDRGASGDPSSAVFLDEVYLGRPSAVAFDAFDVERIEVLKGP QGTLYGRNVVGGAINVISKRPVLDSFGAGASATAGNYGRLDGAAFLNAPVAGNTGAVRVSGSYRSNDGYVENPFLGRDVD DQETLSGRLQYYAEPTDSLRMHITLDGTRDRALGTANHVLELDETDPLSNFYAQNFDPDVTYGSDPGFMERDTWGARGEV AYDFSFATVTALLSYRDLDYGFGYDFDGGNPDPTSPGFNAINISGGNEETAELSSQELRFSSLPDSPVTWVVGLYRYNQD VLRTDSLILNADVIAPIELFDAFVADAELDSHAVFGDVSLPVTDKLTVFGGLRYSRDEKTQRVFNTDSNVPLRADDLFDA TASADFDDLTYRAGLEYQLTPDHMAYASVSRGFKSGGFNGEPSDAAAAVTPFDPEVAVQYEAGHKSLFLDGTLIWNNSVF YVDYTDLQTTQTNNGVRIITNAGEAHIQGYETQLQVSPATNFNLAVAYAYTDAVFDEFVEDGVDYSGNQISRSPKHKVTV SPSYTLALANGPDLTFAVDYQYTSKIFDDNNNQPPELRDATSFVDARVVLDGLGNGMSVSLWGKNLTDERTRTFQGGFLG ANFGAFNPPRTYGVTLSWDY
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=194, Percent_Identity=29.3814432989691, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1787024, Length=218, Percent_Identity=33.4862385321101, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 79725; Mature: 79725
Theoretical pI: Translated: 4.13; Mature: 4.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPLSIRLAAGACSLGVMAFCVATAHAQETMGQASGETAAAAEASQESARTLGTVTVTAQ CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEEEEEEH RRSESLQDVPVVVTVFGADEIAAARIQQIDDIVTRTPGLSFDAFPASQPRLYIRGIGSGD HHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCC RGASGDPSSAVFLDEVYLGRPSAVAFDAFDVERIEVLKGPQGTLYGRNVVGGAINVISKR CCCCCCCCCEEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCEECCCCCCCHHHHHCCC PVLDSFGAGASATAGNYGRLDGAAFLNAPVAGNTGAVRVSGSYRSNDGYVENPFLGRDVD CCHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCEECCCCEECCCCCCCCCC DQETLSGRLQYYAEPTDSLRMHITLDGTRDRALGTANHVLELDETDPLSNFYAQNFDPDV HHHHHCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHEEEECCCCCHHHHHHCCCCCCC TYGSDPGFMERDTWGARGEVAYDFSFATVTALLSYRDLDYGFGYDFDGGNPDPTSPGFNA EECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE INISGGNEETAELSSQELRFSSLPDSPVTWVVGLYRYNQDVLRTDSLILNADVIAPIELF EEECCCCCHHHHHCHHHEEECCCCCCCCEEEEEEECCCCHHHCCCCEEEECCCCCHHHHH DAFVADAELDSHAVFGDVSLPVTDKLTVFGGLRYSRDEKTQRVFNTDSNVPLRADDLFDA HHHHHCCCCCCCEEEEEEECCCCCCEEEEECCEECCCHHHHHHHCCCCCCCEECHHHCCC TASADFDDLTYRAGLEYQLTPDHMAYASVSRGFKSGGFNGEPSDAAAAVTPFDPEVAVQY CCCCCCCCCHHHCCCEEEECCCHHHHHHHHCCHHCCCCCCCCCCCEEEECCCCCCEEEEE EAGHKSLFLDGTLIWNNSVFYVDYTDLQTTQTNNGVRIITNAGEAHIQGYETQLQVSPAT ECCCCEEEEEEEEEECCEEEEEEECCCEEEECCCCEEEEECCCCCEEECEEEEEEECCCC NFNLAVAYAYTDAVFDEFVEDGVDYSGNQISRSPKHKVTVSPSYTLALANGPDLTFAVDY CCEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEEC QYTSKIFDDNNNQPPELRDATSFVDARVVLDGLGNGMSVSLWGKNLTDERTRTFQGGFLG CEEEHEECCCCCCCCCHHHHHHHHHHEEEEECCCCCCEEEEECCCCCCHHHHEECCCEEE ANFGAFNPPRTYGVTLSWDY CCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MKPLSIRLAAGACSLGVMAFCVATAHAQETMGQASGETAAAAEASQESARTLGTVTVTAQ CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEEEEEEH RRSESLQDVPVVVTVFGADEIAAARIQQIDDIVTRTPGLSFDAFPASQPRLYIRGIGSGD HHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCC RGASGDPSSAVFLDEVYLGRPSAVAFDAFDVERIEVLKGPQGTLYGRNVVGGAINVISKR CCCCCCCCCEEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCEECCCCCCCHHHHHCCC PVLDSFGAGASATAGNYGRLDGAAFLNAPVAGNTGAVRVSGSYRSNDGYVENPFLGRDVD CCHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCEECCCCEECCCCCCCCCC DQETLSGRLQYYAEPTDSLRMHITLDGTRDRALGTANHVLELDETDPLSNFYAQNFDPDV HHHHHCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHEEEECCCCCHHHHHHCCCCCCC TYGSDPGFMERDTWGARGEVAYDFSFATVTALLSYRDLDYGFGYDFDGGNPDPTSPGFNA EECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE INISGGNEETAELSSQELRFSSLPDSPVTWVVGLYRYNQDVLRTDSLILNADVIAPIELF EEECCCCCHHHHHCHHHEEECCCCCCCCEEEEEEECCCCHHHCCCCEEEECCCCCHHHHH DAFVADAELDSHAVFGDVSLPVTDKLTVFGGLRYSRDEKTQRVFNTDSNVPLRADDLFDA HHHHHCCCCCCCEEEEEEECCCCCCEEEEECCEECCCHHHHHHHCCCCCCCEECHHHCCC TASADFDDLTYRAGLEYQLTPDHMAYASVSRGFKSGGFNGEPSDAAAAVTPFDPEVAVQY CCCCCCCCCHHHCCCEEEECCCHHHHHHHHCCHHCCCCCCCCCCCEEEECCCCCCEEEEE EAGHKSLFLDGTLIWNNSVFYVDYTDLQTTQTNNGVRIITNAGEAHIQGYETQLQVSPAT ECCCCEEEEEEEEEECCEEEEEEECCCEEEECCCCEEEEECCCCCEEECEEEEEEECCCC NFNLAVAYAYTDAVFDEFVEDGVDYSGNQISRSPKHKVTVSPSYTLALANGPDLTFAVDY CCEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEEC QYTSKIFDDNNNQPPELRDATSFVDARVVLDGLGNGMSVSLWGKNLTDERTRTFQGGFLG CEEEHEECCCCCCCCCHHHHHHHHHHEEEEECCCCCCEEEEECCCCCCHHHHEECCCEEE ANFGAFNPPRTYGVTLSWDY CCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA