| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is ycjG [H]
Identifier: 114797771
GI number: 114797771
Start: 3080011
End: 3081009
Strand: Direct
Name: ycjG [H]
Synonym: HNE_2922
Alternate gene names: 114797771
Gene position: 3080011-3081009 (Clockwise)
Preceding gene: 114798372
Following gene: 114797058
Centisome position: 83.13
GC content: 67.37
Gene sequence:
>999_bases ATGGGTCATCTCCGGCTTGAAACTGATCACATTTCCTCGCCGTTGAGGGCAGCCTTTGCAATTTCGCGGGGATCGAAGAC CAGCGCCGAGACGGTGCGGGTGCGCCTTTCAGAAGATGGAAACGCCGGACGGGGGGAAAGCGTTCCCTATGGACGGTATG GCGAAACGGTACAGAGCGTACTCGAAGAGATCGACGCTGTGCGCGTCCAGATCGAGGCGGGGATCACGCGCGAGGCGCTG CAAAGCCTGATGAAGCCGGGCGCAGCACGCTGCGCGGTGGATTGCGCGCTGTGGGATCTGGAGGCGAAGAAGACGGGAAA GCCGGTCTGGCAACTGGCGGGGTTGCCTGAGCCTGCGCCAGTGGAGACGGCCCTCACGATCAGCCTGGATACGCCGGACG CCATGGCGGCCGCAGCGACCGCAGCGCCGGGACGGCTGTTGAAGCTGAAGCTCGGCGGGGCGGAGGATCTGGCGCGGATC AAGGCGGTGCATGAAGCCCGGCCTGAGGCGCGCCTGATTGCCGACGCCAATGAAGGGTTGAGCGAAGCCGACCTGCCAGG GCTGGTGAAAGCCGCCGCAAGGCTCGGCGTGGTGCTGATTGAGCAACCCTTCCCTGCCGGGAAAGACGCGGCGCTGATGC GGCGGCCGGGCGCGGTGGCGATCTGCGCCGACGAAAGCGCGCATACCAGCGCCGATATCCAGACACTGGCGAGGAATTAT GACGCGGTGAACGTGAAGCTCGACAAGGCAGGCGGGCTGACCGAAGCGCTGGCGATGGTGCGCGCGGCGCGGACTGCCGG GATGGGCGTGATGGTCGGCTGTATGGTGGCGGGGTCGCTCTCGATGGCGCCGGCCGTGCTGCTGGCGCAGCTGGCGGACG CGGCAGATCTCGACGGACCGCTCTGGCTGGCGAGCGATATTGAGGGTGGGCTGGTGTATGCGGAGGGGCGGGTGTCGCCG CCGGGGGCCGGGCTTTGGGGGTGGGGTGGCTCCCGGTAG
Upstream 100 bases:
>100_bases AGGTTCAGCATTCTTTAGGGTCCTGACTGACCTGACTACCAAAACATGCTTAAGGACGGTGTGTGCCAATCCAATACAAT TCACTTTGCAGGATTAACCC
Downstream 100 bases:
>100_bases GGCGCAAGGGCGGTGAGAAGGTCCCGGATCGCGGCTTTGCCGCGTCCGGGATGACCCGGGTGGGTGTAGGTGGTTTTTTT GGGCAGCAGGTTTGGCCGGA
Product: mandelate racemase/muconate lactonizing enzyme family protein
Products: 3-chloro-cis,cis-muconate
Alternate protein names: AE epimerase; AEE [H]
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MGHLRLETDHISSPLRAAFAISRGSKTSAETVRVRLSEDGNAGRGESVPYGRYGETVQSVLEEIDAVRVQIEAGITREAL QSLMKPGAARCAVDCALWDLEAKKTGKPVWQLAGLPEPAPVETALTISLDTPDAMAAAATAAPGRLLKLKLGGAEDLARI KAVHEARPEARLIADANEGLSEADLPGLVKAAARLGVVLIEQPFPAGKDAALMRRPGAVAICADESAHTSADIQTLARNY DAVNVKLDKAGGLTEALAMVRAARTAGMGVMVGCMVAGSLSMAPAVLLAQLADAADLDGPLWLASDIEGGLVYAEGRVSP PGAGLWGWGGSR
Sequences:
>Translated_332_residues MGHLRLETDHISSPLRAAFAISRGSKTSAETVRVRLSEDGNAGRGESVPYGRYGETVQSVLEEIDAVRVQIEAGITREAL QSLMKPGAARCAVDCALWDLEAKKTGKPVWQLAGLPEPAPVETALTISLDTPDAMAAAATAAPGRLLKLKLGGAEDLARI KAVHEARPEARLIADANEGLSEADLPGLVKAAARLGVVLIEQPFPAGKDAALMRRPGAVAICADESAHTSADIQTLARNY DAVNVKLDKAGGLTEALAMVRAARTAGMGVMVGCMVAGSLSMAPAVLLAQLADAADLDGPLWLASDIEGGLVYAEGRVSP PGAGLWGWGGSR >Mature_331_residues GHLRLETDHISSPLRAAFAISRGSKTSAETVRVRLSEDGNAGRGESVPYGRYGETVQSVLEEIDAVRVQIEAGITREALQ SLMKPGAARCAVDCALWDLEAKKTGKPVWQLAGLPEPAPVETALTISLDTPDAMAAAATAAPGRLLKLKLGGAEDLARIK AVHEARPEARLIADANEGLSEADLPGLVKAAARLGVVLIEQPFPAGKDAALMRRPGAVAICADESAHTSADIQTLARNYD AVNVKLDKAGGLTEALAMVRAARTAGMGVMVGCMVAGSLSMAPAVLLAQLADAADLDGPLWLASDIEGGLVYAEGRVSPP GAGLWGWGGSR
Specific function: Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L- Glu and has a role in the recycling of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of all the L-Ala-X dipeptides, excep
COG id: COG4948
COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI87081876, Length=308, Percent_Identity=44.8051948051948, Blast_Score=236, Evalue=1e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018110 - InterPro: IPR013342 - InterPro: IPR013341 - InterPro: IPR001354 [H]
Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]
EC number: 5.5.1.7
Molecular weight: Translated: 34366; Mature: 34235
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGHLRLETDHISSPLRAAFAISRGSKTSAETVRVRLSEDGNAGRGESVPYGRYGETVQSV CCCEEECHHHCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH LEEIDAVRVQIEAGITREALQSLMKPGAARCAVDCALWDLEAKKTGKPVWQLAGLPEPAP HHHHHHEEEEEECCCCHHHHHHHHCCCCHHHEEEHHEEECCHHHCCCCCEEECCCCCCCC VETALTISLDTPDAMAAAATAAPGRLLKLKLGGAEDLARIKAVHEARPEARLIADANEGL CCEEEEEEECCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCC SEADLPGLVKAAARLGVVLIEQPFPAGKDAALMRRPGAVAICADESAHTSADIQTLARNY CCCCCHHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHCCC DAVNVKLDKAGGLTEALAMVRAARTAGMGVMVGCMVAGSLSMAPAVLLAQLADAADLDGP CEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC LWLASDIEGGLVYAEGRVSPPGAGLWGWGGSR EEEECCCCCCEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure GHLRLETDHISSPLRAAFAISRGSKTSAETVRVRLSEDGNAGRGESVPYGRYGETVQSV CCEEECHHHCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH LEEIDAVRVQIEAGITREALQSLMKPGAARCAVDCALWDLEAKKTGKPVWQLAGLPEPAP HHHHHHEEEEEECCCCHHHHHHHHCCCCHHHEEEHHEEECCHHHCCCCCEEECCCCCCCC VETALTISLDTPDAMAAAATAAPGRLLKLKLGGAEDLARIKAVHEARPEARLIADANEGL CCEEEEEEECCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCC SEADLPGLVKAAARLGVVLIEQPFPAGKDAALMRRPGAVAICADESAHTSADIQTLARNY CCCCCHHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHCCC DAVNVKLDKAGGLTEALAMVRAARTAGMGVMVGCMVAGSLSMAPAVLLAQLADAADLDGP CEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC LWLASDIEGGLVYAEGRVSPPGAGLWGWGGSR EEEECCCCCCEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 2-chloro-2,5-dihydro-5-oxofuran-2-acetate
Specific reaction: 2-chloro-2,5-dihydro-5-oxofuran-2-acetate = 3-chloro-cis,cis-muconate
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7499381; 9097039; 9278503 [H]