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The map label for this gene is ybiX [C]

Identifier: 114797707

GI number: 114797707

Start: 1662192

End: 1662866

Strand: Reverse

Name: ybiX [C]

Synonym: HNE_1625

Alternate gene names: 114797707

Gene position: 1662866-1662192 (Counterclockwise)

Preceding gene: 114800550

Following gene: 114798697

Centisome position: 44.88

GC content: 57.48

Gene sequence:

>675_bases
ATGATTGTCATTGAAAATATTCTTGGCCAGGACGTGCTGACCGAAGTTGCCGCAGCGCTCAGGGAACTGCGCTGGGAAGA
CGGACGCAACACGGCTGGCGCAACTGCCCGCCGGGTGAAACGGAACCAGCAAGCCGACCTTTCCAGCCGGACGGGTTCCA
AGGTGCGCGAGGTGCTGCTGGAGGCCGTAAAGCGGCACCCCGTTGTGGAGGCATATGCACGCCCGCTGAAATTCGCGCCG
CCCCTGATCAGCTGTAGCGGTGAAGGCGACGCCTATGGCTTGCACATCGACAACCCCGTGATGGGCAAAGGCGACGCGCG
GCTACGCACGGATCTTTCCTTTACGCTCTTCCTGTCACCGCCTGAGAGCTATGACGGGGGGGAGCTTGAAATCGAAACCG
TGTTCAAAACAGAATCAGTCAAGTTACCCGCCGGGAGCATGGTCATATATCCGTCTACGGAATTACATCGTGTGACCCCT
GTTACATCCGGCGAACGCTTTGTGTTTGTGGGGTGGATTCAAAGCGCAATAAAAGACGCCGCGCAGCGCGCTATTCTCTT
CGATGTCACCAATCTGAAGGCTGGACTTGCGCGCCGCTTTCCGCCGGGATCGCCGGAGCTGCTGACCTTGGCAAAAACGG
AGTCCAACCTGATAAGAATGTGGTCTGACATTTAA

Upstream 100 bases:

>100_bases
CTCATCTATGCACTCCGAATATGCTGTTTGTGTTTGAGAATGAGTTGCAGTTAAAGCAAAGATGCCGTGCCTGCAAGGGC
GGGCACGTAGAAGGTCGCAC

Downstream 100 bases:

>100_bases
CGCGCGACCCGGCTGTTTCAGTGACACTTGCGGCGCCAGTCGAAAATTCATCCGTGACCTCGCCGCTCAAAGCCCCCATA
TGAACTTGACCATGCGCGTT

Product: 2OG-Fe(II) oxygenase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MIVIENILGQDVLTEVAAALRELRWEDGRNTAGATARRVKRNQQADLSSRTGSKVREVLLEAVKRHPVVEAYARPLKFAP
PLISCSGEGDAYGLHIDNPVMGKGDARLRTDLSFTLFLSPPESYDGGELEIETVFKTESVKLPAGSMVIYPSTELHRVTP
VTSGERFVFVGWIQSAIKDAAQRAILFDVTNLKAGLARRFPPGSPELLTLAKTESNLIRMWSDI

Sequences:

>Translated_224_residues
MIVIENILGQDVLTEVAAALRELRWEDGRNTAGATARRVKRNQQADLSSRTGSKVREVLLEAVKRHPVVEAYARPLKFAP
PLISCSGEGDAYGLHIDNPVMGKGDARLRTDLSFTLFLSPPESYDGGELEIETVFKTESVKLPAGSMVIYPSTELHRVTP
VTSGERFVFVGWIQSAIKDAAQRAILFDVTNLKAGLARRFPPGSPELLTLAKTESNLIRMWSDI
>Mature_224_residues
MIVIENILGQDVLTEVAAALRELRWEDGRNTAGATARRVKRNQQADLSSRTGSKVREVLLEAVKRHPVVEAYARPLKFAP
PLISCSGEGDAYGLHIDNPVMGKGDARLRTDLSFTLFLSPPESYDGGELEIETVFKTESVKLPAGSMVIYPSTELHRVTP
VTSGERFVFVGWIQSAIKDAAQRAILFDVTNLKAGLARRFPPGSPELLTLAKTESNLIRMWSDI

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=225, Percent_Identity=41.3333333333333, Blast_Score=167, Evalue=8e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1625_HYPNA (Q0C1R0)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_760333.1
- ProteinModelPortal:   Q0C1R0
- STRING:   Q0C1R0
- GeneID:   4289357
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_1625
- NMPDR:   fig|228405.5.peg.1570
- TIGR:   HNE_1625
- eggNOG:   COG3128
- HOGENOM:   HBG285605
- OMA:   LAKTHAN
- PhylomeDB:   Q0C1R0
- ProtClustDB:   CLSK2780969
- BioCyc:   HNEP81032:HNE_1625-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 24661; Mature: 24661

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 166-166

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVIENILGQDVLTEVAAALRELRWEDGRNTAGATARRVKRNQQADLSSRTGSKVREVLL
CEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHCCHHHHHHHHH
EAVKRHPVVEAYARPLKFAPPLISCSGEGDAYGLHIDNPVMGKGDARLRTDLSFTLFLSP
HHHHHCCHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCEEEECEEEEEEECC
PESYDGGELEIETVFKTESVKLPAGSMVIYPSTELHRVTPVTSGERFVFVGWIQSAIKDA
CCCCCCCEEEEEEEEEECEEECCCCCEEEECCCCCEEECCCCCCCCEEEHHHHHHHHHHH
AQRAILFDVTNLKAGLARRFPPGSPELLTLAKTESNLIRMWSDI
HHHEEEEEEHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHCC
>Mature Secondary Structure
MIVIENILGQDVLTEVAAALRELRWEDGRNTAGATARRVKRNQQADLSSRTGSKVREVLL
CEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHCCHHHHHHHHH
EAVKRHPVVEAYARPLKFAPPLISCSGEGDAYGLHIDNPVMGKGDARLRTDLSFTLFLSP
HHHHHCCHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCEEEECEEEEEEECC
PESYDGGELEIETVFKTESVKLPAGSMVIYPSTELHRVTPVTSGERFVFVGWIQSAIKDA
CCCCCCCEEEEEEEEEECEEECCCCCEEEECCCCCEEECCCCCCCCEEEHHHHHHHHHHH
AQRAILFDVTNLKAGLARRFPPGSPELLTLAKTESNLIRMWSDI
HHHEEEEEEHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA