| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is 114797673
Identifier: 114797673
GI number: 114797673
Start: 697290
End: 698519
Strand: Direct
Name: 114797673
Synonym: HNE_0687
Alternate gene names: NA
Gene position: 697290-698519 (Clockwise)
Preceding gene: 114800443
Following gene: 114799019
Centisome position: 18.82
GC content: 65.77
Gene sequence:
>1230_bases ATGTTAAGGTTTCTTAAACCAGGCCGGGCCAGTGTATTCCGGGTTAATGGGCTGCGTGAAAAGCTCACACGGTGGTGGCT TGGAATGACTGATCAGGAACAGAGAGACGTGTTCATTCGCGGCGGCATGATTGCCGTTGTCGCGGTTACGGCGTCCGTGT CCCTTCCGGCGATCGCAGAACAACAGGCCGGCCTGCGCGCCGACGCGGAATTCCGCGCCGAAGCCGAGCGGCTCGCCCTT TATGAAGATGGCGGCCTCGCCGTCCGCACCGCCAGCCACACGCCGTCCCTGATGGACTCGCCCTGGCTGCGTACCGTCGA ATACACCCTGAAGCGCGACATCGACTCCTCGATGAGCCGCTATGCCATGCGCGACCGCGATGGCGCCGCACTCGCCTCCC TCGCGTCTTTCCGCCCCGAGCAGATCCAGCGCGCCGAGACCATCGATGCCGAGCTGATGTGCATGGCGCAGGCCGTCTAT TACGAATCGGCCTGGGAACCCCTCAACGGCCAGCTCGCCGTTGCCGAAGTCATTTCCAACCGCGTCCGCGACCACCGCTA CCCGGACAGTGTCTGCGGCGTGGTCTTCCAGGGCGCGACCCGCACCACCGGCTGCCAGTTCACCTTCACCTGTGACGGGT CGATGGACCGCAACAAGCCGGCCGGCGAAGCCTGGGAGCGTGCCCAGCGTATTGCCGCCCATGTGCTGATGGACCTCAAT GAGGACCGCACCGGCGGCGCCACCCATTATCACGCTACCTATGTCGATCCGGTCTGGAATTCGGGCCTGGTCAAGACAGA GCAGGTTGGCCTGCACATCTTCTACCGTTTCCCCCGCGGCGCCGAATGGGCCAGCGTGGAGCGCAACTTTGAAGCCCGCA AGCGCCAGACCGAGCTGCGCCTGGCTGAGCTGGATGCCACGAAGGAAGCCGACATGGCCGCCCTCGACGAAGGCCTCCTC TTCGCAGACGCCTCCACCGCAGCAGACGATGGCTATTACACGATCACGCCGACCGTCGCGCCCGCCGGTGTCACCACCTC CACCCGCACGGTCTCGACCCCGGCCCCGCGCCTGATGTCCATCCAGACCGTGAAGAAGGCCCCCGAGGTCGCGCCCGTCC AGGCAGACGTCGCGCCGCAAGCCGAAGCTGTCGAGGCCGTTCCCGAGCCCGTCGTGGTAGACGAATACCTCGCCCGCCAG CTCGAAGCCGCCCGCGCCGCCGCCGAGTAA
Upstream 100 bases:
>100_bases TCTGGCCGGGTACGTTCGGCCTCTACAAACAGATAAATCTCGGACTCTCCGGGGCATCAGGCAGAACCATAACTGCCAGC CGGGGAACAGAGGAGTGGTG
Downstream 100 bases:
>100_bases GCGCCAGGTCACGGTTCAAAAATTTCAAGGCCGCTGATGAAACGCATCAGCGGCCTTTTTGTTTCCCTCAATTGACCTGC CAGCCTAATCCCGCGCGGGC
Product: hydrolase
Products: NA
Alternate protein names: Cell Wall Hydrolase Family; SleB-Like Protein; Hydrolase; Cell Wall Hydrolase; Spore Cortex-Lytic; Cell Wall Hydrolase Domain Protein; Spore-Cortex-Lytic Prepeptide; Cell Wall Hydrolase Sleb; N-Acetylmuramoyl-L-Alanine Amidase; Cell Wall Hydrolase Domain-Containing Protein; Cell Wall Hydrolase Family Protein
Number of amino acids: Translated: 409; Mature: 409
Protein sequence:
>409_residues MLRFLKPGRASVFRVNGLREKLTRWWLGMTDQEQRDVFIRGGMIAVVAVTASVSLPAIAEQQAGLRADAEFRAEAERLAL YEDGGLAVRTASHTPSLMDSPWLRTVEYTLKRDIDSSMSRYAMRDRDGAALASLASFRPEQIQRAETIDAELMCMAQAVY YESAWEPLNGQLAVAEVISNRVRDHRYPDSVCGVVFQGATRTTGCQFTFTCDGSMDRNKPAGEAWERAQRIAAHVLMDLN EDRTGGATHYHATYVDPVWNSGLVKTEQVGLHIFYRFPRGAEWASVERNFEARKRQTELRLAELDATKEADMAALDEGLL FADASTAADDGYYTITPTVAPAGVTTSTRTVSTPAPRLMSIQTVKKAPEVAPVQADVAPQAEAVEAVPEPVVVDEYLARQ LEAARAAAE
Sequences:
>Translated_409_residues MLRFLKPGRASVFRVNGLREKLTRWWLGMTDQEQRDVFIRGGMIAVVAVTASVSLPAIAEQQAGLRADAEFRAEAERLAL YEDGGLAVRTASHTPSLMDSPWLRTVEYTLKRDIDSSMSRYAMRDRDGAALASLASFRPEQIQRAETIDAELMCMAQAVY YESAWEPLNGQLAVAEVISNRVRDHRYPDSVCGVVFQGATRTTGCQFTFTCDGSMDRNKPAGEAWERAQRIAAHVLMDLN EDRTGGATHYHATYVDPVWNSGLVKTEQVGLHIFYRFPRGAEWASVERNFEARKRQTELRLAELDATKEADMAALDEGLL FADASTAADDGYYTITPTVAPAGVTTSTRTVSTPAPRLMSIQTVKKAPEVAPVQADVAPQAEAVEAVPEPVVVDEYLARQ LEAARAAAE >Mature_409_residues MLRFLKPGRASVFRVNGLREKLTRWWLGMTDQEQRDVFIRGGMIAVVAVTASVSLPAIAEQQAGLRADAEFRAEAERLAL YEDGGLAVRTASHTPSLMDSPWLRTVEYTLKRDIDSSMSRYAMRDRDGAALASLASFRPEQIQRAETIDAELMCMAQAVY YESAWEPLNGQLAVAEVISNRVRDHRYPDSVCGVVFQGATRTTGCQFTFTCDGSMDRNKPAGEAWERAQRIAAHVLMDLN EDRTGGATHYHATYVDPVWNSGLVKTEQVGLHIFYRFPRGAEWASVERNFEARKRQTELRLAELDATKEADMAALDEGLL FADASTAADDGYYTITPTVAPAGVTTSTRTVSTPAPRLMSIQTVKKAPEVAPVQADVAPQAEAVEAVPEPVVVDEYLARQ LEAARAAAE
Specific function: Unknown
COG id: COG3773
COG function: function code M; Cell wall hydrolyses involved in spore germination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45066; Mature: 45066
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRFLKPGRASVFRVNGLREKLTRWWLGMTDQEQRDVFIRGGMIAVVAVTASVSLPAIAE CCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCCCCCHHHH QQAGLRADAEFRAEAERLALYEDGGLAVRTASHTPSLMDSPWLRTVEYTLKRDIDSSMSR HHCCCCCCCHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH YAMRDRDGAALASLASFRPEQIQRAETIDAELMCMAQAVYYESAWEPLNGQLAVAEVISN HHHCCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH RVRDHRYPDSVCGVVFQGATRTTGCQFTFTCDGSMDRNKPAGEAWERAQRIAAHVLMDLN HHHHCCCCHHHHHHEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCC EDRTGGATHYHATYVDPVWNSGLVKTEQVGLHIFYRFPRGAEWASVERNFEARKRQTELR CCCCCCCEEEEEEEECCCCCCCCEEEEECCEEEEEECCCCCCHHHHHHCHHHHHHHHHHH LAELDATKEADMAALDEGLLFADASTAADDGYYTITPTVAPAGVTTSTRTVSTPAPRLMS HHHHCCCCCCHHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEECCCCCHHHH IQTVKKAPEVAPVQADVAPQAEAVEAVPEPVVVDEYLARQLEAARAAAE HHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLRFLKPGRASVFRVNGLREKLTRWWLGMTDQEQRDVFIRGGMIAVVAVTASVSLPAIAE CCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCCCCCHHHH QQAGLRADAEFRAEAERLALYEDGGLAVRTASHTPSLMDSPWLRTVEYTLKRDIDSSMSR HHCCCCCCCHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH YAMRDRDGAALASLASFRPEQIQRAETIDAELMCMAQAVYYESAWEPLNGQLAVAEVISN HHHCCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH RVRDHRYPDSVCGVVFQGATRTTGCQFTFTCDGSMDRNKPAGEAWERAQRIAAHVLMDLN HHHHCCCCHHHHHHEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCC EDRTGGATHYHATYVDPVWNSGLVKTEQVGLHIFYRFPRGAEWASVERNFEARKRQTELR CCCCCCCEEEEEEEECCCCCCCCEEEEECCEEEEEECCCCCCHHHHHHCHHHHHHHHHHH LAELDATKEADMAALDEGLLFADASTAADDGYYTITPTVAPAGVTTSTRTVSTPAPRLMS HHHHCCCCCCHHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEECCCCCHHHH IQTVKKAPEVAPVQADVAPQAEAVEAVPEPVVVDEYLARQLEAARAAAE HHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA