| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is 114797439
Identifier: 114797439
GI number: 114797439
Start: 496831
End: 498690
Strand: Reverse
Name: 114797439
Synonym: HNE_0506
Alternate gene names: NA
Gene position: 498690-496831 (Counterclockwise)
Preceding gene: 114800307
Following gene: 114798720
Centisome position: 13.46
GC content: 60.81
Gene sequence:
>1860_bases ATGGTATCTCGTCCGATCGCGCTTCTCGCTGCCGCCCTTCTCATCGCCTCGTGTGGCACGCCGGCTCACCGCGAACCGCG CGTCCCGGAATATTCCGCCGAAGTGATCGCTGCCGAATCCGAGCGGCTGAACGCATGGTTCGAGCAGACCTTCGAAGCCG CCCTCGCCCGCGACCCCATGCGCCTGACCATGCTGGGCCGCCGCGACCGGTACGGGGAATGGACCGACCCTTCCCCTGAG TTCGAAGCTGAAACGCTGGCCCTGCAACAGGCCAGTGTTCAGGAAATGAAAGACACGTTTGATTTCAACAAGCTGGACAG CCAGGCCCAGCTTTCCTGGCGGTTGGCGGTGTATGAACTTGAACGCGCAGAGGCGGACGCCGCGTTCCCTCACCACAGCT ACACCTTCAACCAGATGTTCGGCGTCCAGTCCGCAGTCCCCGCTTTCCTCATCAACCAGCACAAGGCCACCAGCGCAGCA GATCTCGACGCCTACATTGCGCGGCTTGAAGGCCTGCCCGCCTATCTCGGCCAGCATGTCGAAAACGCCAGGGTGTCTGC CGGAATGGGCATTCAGCCGCCGTCCTTCGTGTATGATTATGTCCTGACAGACGCGCAGGGCCTGATAACCGGCCACCCCT TCTCCGGCGCGGCCGATGGCAGTGCAGACAGCCCCCTGATGTCAGATTTCCGCGGCAAGACGGCCGCCCTTGTCACCAAT GGCACGCTGACCGAAGCGGACGCCGAAGCGTTCATCCAGCGCGCCGAAGCAGCGCTCATATCCTCCGTTGGCCCCGCCTA CACCGGCGCCATTGAGGAACTGACCCGCCAGCAACTCAACGCCACCGCCGATGACGGCATCTGGAAGCTGCCCGACGGGG CGGACTATTACGAAACCCGCCTCAAGGCGATGACGACCACAGACCTTACCGCCGAAGAAATCCATCAGATCGGCCTGGAT GAAATCGCCCGCATCCATGGGGAAATGCAGATCATCATGGAACAGGTCGGCTTTGAGGGCGATCTGCAGGATTTCTTTCA GTTCATGCGGACTGATCCGCGCTTCTACAAGCCGGAAACACCGGAAGGGCGTGAGGAATACCTCGCTGAAGCGCGTGAAG CGATTGCGCGCATGGAAGGAGACCTCCCCAGCCTCTTCCACACTTTTCCCAAGGCCGGCATGATTGTGCAGGCCGTTGAG CCCTTCCGCGAAAAATCCGCCGGCAAAGCGTTCTACAGCCGCCCAGCCCCCGATGGCAGCCGGCCAGGCGTCTACTACGC CAACCTTTACCGCATGGCCGATATGCCGACCTATCAGCTGGAAGCCCTTGCTTTCCATGAGGGCATTCCCGGCCACCATA TGCAGATCGCCATTGCCCAGGAGCTGGACGGCATCCCCAGCTTCCGCAAATTCGGCGGCTACACGGCCTATTCCGAAGGC TGGGGCCTCTATACCGAGCTTCTGCCCAAGGAAATCGGTTATTATTCCGATCCGTATTCGGACTTTGGCCGTCTTGCCAT GGAGATCTGGCGCGCCGCACGTCTCGTTGTTGATACCGGCATTCACTCAAAACAATGGACGCGCGAACAGGCCGTCCAGT ATCTCATGGACAATACGCCCAACCCGGAAGGTGACTGCCGCAAGGCCATCGACCGCTATATCGTGATGCCGGGCCAGGCG ACCGCCTACAAGATCGGCATGCTGAAGATCGTCGAACTGCGCGACCGTGCGCGCGCAGAGCTTGGCGAGGCCTTTGACAT CCGCGATTTTCATGATGTGGTTCTCAAGGATGGGGCCGTCCCGCTGGCTATCCTCGAGGAGAATGTCGACGCATGGATCG CCGAGTCAAAACCCGTCTGA
Upstream 100 bases:
>100_bases ACTAGACTACCAGTTCTCGCACGGCAAAGGTTAACGAACCCGAAAAAGCCGTTAATACAGACTGAGCAATCTTCCCCAAC TGAACAGGATTCGGCTTACC
Downstream 100 bases:
>100_bases ACAGACGGCACCTGAAGGCGGGCGCGGCCCTCGCGCTCGCCATGATGGTGCTTTCAGGCTGCAACACGCTGACCAGCGCG CTTCTCGCGCCAAAAATCGA
Product: putative lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 619; Mature: 619
Protein sequence:
>619_residues MVSRPIALLAAALLIASCGTPAHREPRVPEYSAEVIAAESERLNAWFEQTFEAALARDPMRLTMLGRRDRYGEWTDPSPE FEAETLALQQASVQEMKDTFDFNKLDSQAQLSWRLAVYELERAEADAAFPHHSYTFNQMFGVQSAVPAFLINQHKATSAA DLDAYIARLEGLPAYLGQHVENARVSAGMGIQPPSFVYDYVLTDAQGLITGHPFSGAADGSADSPLMSDFRGKTAALVTN GTLTEADAEAFIQRAEAALISSVGPAYTGAIEELTRQQLNATADDGIWKLPDGADYYETRLKAMTTTDLTAEEIHQIGLD EIARIHGEMQIIMEQVGFEGDLQDFFQFMRTDPRFYKPETPEGREEYLAEAREAIARMEGDLPSLFHTFPKAGMIVQAVE PFREKSAGKAFYSRPAPDGSRPGVYYANLYRMADMPTYQLEALAFHEGIPGHHMQIAIAQELDGIPSFRKFGGYTAYSEG WGLYTELLPKEIGYYSDPYSDFGRLAMEIWRAARLVVDTGIHSKQWTREQAVQYLMDNTPNPEGDCRKAIDRYIVMPGQA TAYKIGMLKIVELRDRARAELGEAFDIRDFHDVVLKDGAVPLAILEENVDAWIAESKPV
Sequences:
>Translated_619_residues MVSRPIALLAAALLIASCGTPAHREPRVPEYSAEVIAAESERLNAWFEQTFEAALARDPMRLTMLGRRDRYGEWTDPSPE FEAETLALQQASVQEMKDTFDFNKLDSQAQLSWRLAVYELERAEADAAFPHHSYTFNQMFGVQSAVPAFLINQHKATSAA DLDAYIARLEGLPAYLGQHVENARVSAGMGIQPPSFVYDYVLTDAQGLITGHPFSGAADGSADSPLMSDFRGKTAALVTN GTLTEADAEAFIQRAEAALISSVGPAYTGAIEELTRQQLNATADDGIWKLPDGADYYETRLKAMTTTDLTAEEIHQIGLD EIARIHGEMQIIMEQVGFEGDLQDFFQFMRTDPRFYKPETPEGREEYLAEAREAIARMEGDLPSLFHTFPKAGMIVQAVE PFREKSAGKAFYSRPAPDGSRPGVYYANLYRMADMPTYQLEALAFHEGIPGHHMQIAIAQELDGIPSFRKFGGYTAYSEG WGLYTELLPKEIGYYSDPYSDFGRLAMEIWRAARLVVDTGIHSKQWTREQAVQYLMDNTPNPEGDCRKAIDRYIVMPGQA TAYKIGMLKIVELRDRARAELGEAFDIRDFHDVVLKDGAVPLAILEENVDAWIAESKPV >Mature_619_residues MVSRPIALLAAALLIASCGTPAHREPRVPEYSAEVIAAESERLNAWFEQTFEAALARDPMRLTMLGRRDRYGEWTDPSPE FEAETLALQQASVQEMKDTFDFNKLDSQAQLSWRLAVYELERAEADAAFPHHSYTFNQMFGVQSAVPAFLINQHKATSAA DLDAYIARLEGLPAYLGQHVENARVSAGMGIQPPSFVYDYVLTDAQGLITGHPFSGAADGSADSPLMSDFRGKTAALVTN GTLTEADAEAFIQRAEAALISSVGPAYTGAIEELTRQQLNATADDGIWKLPDGADYYETRLKAMTTTDLTAEEIHQIGLD EIARIHGEMQIIMEQVGFEGDLQDFFQFMRTDPRFYKPETPEGREEYLAEAREAIARMEGDLPSLFHTFPKAGMIVQAVE PFREKSAGKAFYSRPAPDGSRPGVYYANLYRMADMPTYQLEALAFHEGIPGHHMQIAIAQELDGIPSFRKFGGYTAYSEG WGLYTELLPKEIGYYSDPYSDFGRLAMEIWRAARLVVDTGIHSKQWTREQAVQYLMDNTPNPEGDCRKAIDRYIVMPGQA TAYKIGMLKIVELRDRARAELGEAFDIRDFHDVVLKDGAVPLAILEENVDAWIAESKPV
Specific function: Unknown
COG id: COG4805
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68940; Mature: 68940
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSRPIALLAAALLIASCGTPAHREPRVPEYSAEVIAAESERLNAWFEQTFEAALARDPM CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHCCCE RLTMLGRRDRYGEWTDPSPEFEAETLALQQASVQEMKDTFDFNKLDSQAQLSWRLAVYEL EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH ERAEADAAFPHHSYTFNQMFGVQSAVPAFLINQHKATSAADLDAYIARLEGLPAYLGQHV HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHH ENARVSAGMGIQPPSFVYDYVLTDAQGLITGHPFSGAADGSADSPLMSDFRGKTAALVTN HHHHHHCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHCCCEEEEEEC GTLTEADAEAFIQRAEAALISSVGPAYTGAIEELTRQQLNATADDGIWKLPDGADYYETR CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHH LKAMTTTDLTAEEIHQIGLDEIARIHGEMQIIMEQVGFEGDLQDFFQFMRTDPRFYKPET HHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC PEGREEYLAEAREAIARMEGDLPSLFHTFPKAGMIVQAVEPFREKSAGKAFYSRPAPDGS CCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCC RPGVYYANLYRMADMPTYQLEALAFHEGIPGHHMQIAIAQELDGIPSFRKFGGYTAYSEG CCCEEHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEHHHCCCCCCHHHHCCCCCCCCC WGLYTELLPKEIGYYSDPYSDFGRLAMEIWRAARLVVDTGIHSKQWTREQAVQYLMDNTP CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC NPEGDCRKAIDRYIVMPGQATAYKIGMLKIVELRDRARAELGEAFDIRDFHDVVLKDGAV CCCHHHHHHHHHEEECCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC PLAILEENVDAWIAESKPV EEEEECCCCHHHCCCCCCC >Mature Secondary Structure MVSRPIALLAAALLIASCGTPAHREPRVPEYSAEVIAAESERLNAWFEQTFEAALARDPM CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHCCCE RLTMLGRRDRYGEWTDPSPEFEAETLALQQASVQEMKDTFDFNKLDSQAQLSWRLAVYEL EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH ERAEADAAFPHHSYTFNQMFGVQSAVPAFLINQHKATSAADLDAYIARLEGLPAYLGQHV HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHH ENARVSAGMGIQPPSFVYDYVLTDAQGLITGHPFSGAADGSADSPLMSDFRGKTAALVTN HHHHHHCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHCCCEEEEEEC GTLTEADAEAFIQRAEAALISSVGPAYTGAIEELTRQQLNATADDGIWKLPDGADYYETR CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHH LKAMTTTDLTAEEIHQIGLDEIARIHGEMQIIMEQVGFEGDLQDFFQFMRTDPRFYKPET HHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC PEGREEYLAEAREAIARMEGDLPSLFHTFPKAGMIVQAVEPFREKSAGKAFYSRPAPDGS CCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCC RPGVYYANLYRMADMPTYQLEALAFHEGIPGHHMQIAIAQELDGIPSFRKFGGYTAYSEG CCCEEHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEHHHCCCCCCHHHHCCCCCCCCC WGLYTELLPKEIGYYSDPYSDFGRLAMEIWRAARLVVDTGIHSKQWTREQAVQYLMDNTP CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC NPEGDCRKAIDRYIVMPGQATAYKIGMLKIVELRDRARAELGEAFDIRDFHDVVLKDGAV CCCHHHHHHHHHEEECCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC PLAILEENVDAWIAESKPV EEEEECCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA