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The map label for this gene is sufD [H]

Identifier: 114797340

GI number: 114797340

Start: 2773279

End: 2774484

Strand: Reverse

Name: sufD [H]

Synonym: HNE_2615

Alternate gene names: 114797340

Gene position: 2774484-2773279 (Counterclockwise)

Preceding gene: 114797142

Following gene: 114800315

Centisome position: 74.88

GC content: 65.17

Gene sequence:

>1206_bases
ATGATCCGCAATCCAACCGTTGCGGAACTTGAACTGGTCGCGCGCTACGCCGCCCTGAAGCCGGACCCGCGCCGGGAACG
CCTGTTTGAAGCCTTCGCGCTCACCGGGCTGCCCCACCGGCGCAACGAAGAATGGCGCTGGTCGGACTTCAAGGCCGCCG
TCGGCGCGCTGGAGGCTTCGGCCACCCCGCCCGCAGCTGATCCTCTGGCATCAGATGATGTCGCTACGCTAAAATTCACG
CCGCAGGGCTATGAGGCGCCCGCCTCTCTCCCGCCGGGCCTGCGCCTGCTTCCGAAAGAGGAAGTTCAGGCGATGAGCGG
CGCCGAAGATGCCCCGCTGGGCGCATTGGCGGCTGCGCTTTCCGGCGCGAAGAATGCGCCTGCAACGCTGCTGGCCGAAG
TGAGCGGCGAGACGCCCGTGCGCCTGCATATGGTCTTTTCCGGCCCCGGCGCCATCAATGCGGCAAGGGTTGTTTTCCTT
GTCCGTCCGGGGGCAGAGCTTCAGGTTTCCGAGAGCCATCTGGGCGGCGCGGCTTTCTCCGCATCGCTGATCGAATTCAC
ACTGCAGCCCGGCGCGCGCCTGAACCGCGTGGTTTACCAGCGCGGCGGCAAGGGCGAGGCGCAAGCCATCACGGCGCTGA
TTCATCAGGAGACGGACGCCCAAACGAAGCAGACCGTGCTGGCCTTTGGCGCCAAGGTTTCCCGCATCGAAACGCGACTG
GTCCATCAGGAGACAGGCTCTCACGCTACGCTGAACGCGGCCTATCTGGCCGGCGATGGCTACCATGTCGATTTCACCAG
CCATGTGCGCCATGGCGCGCGCGCTTGCATCACGCGTCAGGCCACCAAGGGCGCTGTGGTGAATGGCGGGCGCGGCGTGT
TCCAGGGCAAGTTCCATGTGCCCCGCAATGCGGGCCAGCAGACGGACGCCTCGATGCAGCACAACGCGCTGTTGCTGGAA
GACGGCGCCGAAGTGTTCGCCAAGCCCGAACTTGAAATCCTTGCCGACGATGTTCAGTGCGCACACGGAAATACCTCCGG
CGCGCTCGACGCGGCGCAACTGTTTTATCTGCGCCAGCGCGGTATTCCGCTCGTCCAGGCGCGGGCAATGCTGACCGAGG
CTTTCATCGCTGAAGCCTTGGAAGATGCGGGCGTGCATGAAGATGCGCTGCGGGCGCAGGCGCAAGCCTGGCTGTCAGAG
GTCTGA

Upstream 100 bases:

>100_bases
GTATCATCAAGTCCGGCGGGCCGGAACTTGCTTTGCGCCTTGAAAAAGAGGGCTATGACGGCGTGCTCGCGGAGGCTGTG
TGAGCACCGCCCTGAAGGAT

Downstream 100 bases:

>100_bases
TGCCATGCCACGCAAGCTCGACCTTCCCGCCATCCGTGCCGAATTCCCGATCCTCTCACGCGAAGTGAACGGGCATCCGC
TGGTTTACCTCGACAATGCC

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MIRNPTVAELELVARYAALKPDPRRERLFEAFALTGLPHRRNEEWRWSDFKAAVGALEASATPPAADPLASDDVATLKFT
PQGYEAPASLPPGLRLLPKEEVQAMSGAEDAPLGALAAALSGAKNAPATLLAEVSGETPVRLHMVFSGPGAINAARVVFL
VRPGAELQVSESHLGGAAFSASLIEFTLQPGARLNRVVYQRGGKGEAQAITALIHQETDAQTKQTVLAFGAKVSRIETRL
VHQETGSHATLNAAYLAGDGYHVDFTSHVRHGARACITRQATKGAVVNGGRGVFQGKFHVPRNAGQQTDASMQHNALLLE
DGAEVFAKPELEILADDVQCAHGNTSGALDAAQLFYLRQRGIPLVQARAMLTEAFIAEALEDAGVHEDALRAQAQAWLSE
V

Sequences:

>Translated_401_residues
MIRNPTVAELELVARYAALKPDPRRERLFEAFALTGLPHRRNEEWRWSDFKAAVGALEASATPPAADPLASDDVATLKFT
PQGYEAPASLPPGLRLLPKEEVQAMSGAEDAPLGALAAALSGAKNAPATLLAEVSGETPVRLHMVFSGPGAINAARVVFL
VRPGAELQVSESHLGGAAFSASLIEFTLQPGARLNRVVYQRGGKGEAQAITALIHQETDAQTKQTVLAFGAKVSRIETRL
VHQETGSHATLNAAYLAGDGYHVDFTSHVRHGARACITRQATKGAVVNGGRGVFQGKFHVPRNAGQQTDASMQHNALLLE
DGAEVFAKPELEILADDVQCAHGNTSGALDAAQLFYLRQRGIPLVQARAMLTEAFIAEALEDAGVHEDALRAQAQAWLSE
V
>Mature_401_residues
MIRNPTVAELELVARYAALKPDPRRERLFEAFALTGLPHRRNEEWRWSDFKAAVGALEASATPPAADPLASDDVATLKFT
PQGYEAPASLPPGLRLLPKEEVQAMSGAEDAPLGALAAALSGAKNAPATLLAEVSGETPVRLHMVFSGPGAINAARVVFL
VRPGAELQVSESHLGGAAFSASLIEFTLQPGARLNRVVYQRGGKGEAQAITALIHQETDAQTKQTVLAFGAKVSRIETRL
VHQETGSHATLNAAYLAGDGYHVDFTSHVRHGARACITRQATKGAVVNGGRGVFQGKFHVPRNAGQQTDASMQHNALLLE
DGAEVFAKPELEILADDVQCAHGNTSGALDAAQLFYLRQRGIPLVQARAMLTEAFIAEALEDAGVHEDALRAQAQAWLSE
V

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=384, Percent_Identity=28.3854166666667, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 42659; Mature: 42659

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRNPTVAELELVARYAALKPDPRRERLFEAFALTGLPHRRNEEWRWSDFKAAVGALEAS
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
ATPPAADPLASDDVATLKFTPQGYEAPASLPPGLRLLPKEEVQAMSGAEDAPLGALAAAL
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHH
SGAKNAPATLLAEVSGETPVRLHMVFSGPGAINAARVVFLVRPGAELQVSESHLGGAAFS
CCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEECCCCCCHHHH
ASLIEFTLQPGARLNRVVYQRGGKGEAQAITALIHQETDAQTKQTVLAFGAKVSRIETRL
HHHHHEECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
VHQETGSHATLNAAYLAGDGYHVDFTSHVRHGARACITRQATKGAVVNGGRGVFQGKFHV
HHHCCCCCEEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECEEEC
PRNAGQQTDASMQHNALLLEDGAEVFAKPELEILADDVQCAHGNTSGALDAAQLFYLRQR
CCCCCCCCCCCHHCCEEEEECCHHHHCCCCCEEEECCHHCCCCCCCCCHHHHHHHHHHHC
GIPLVQARAMLTEAFIAEALEDAGVHEDALRAQAQAWLSEV
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRNPTVAELELVARYAALKPDPRRERLFEAFALTGLPHRRNEEWRWSDFKAAVGALEAS
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
ATPPAADPLASDDVATLKFTPQGYEAPASLPPGLRLLPKEEVQAMSGAEDAPLGALAAAL
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHH
SGAKNAPATLLAEVSGETPVRLHMVFSGPGAINAARVVFLVRPGAELQVSESHLGGAAFS
CCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEECCCCCCHHHH
ASLIEFTLQPGARLNRVVYQRGGKGEAQAITALIHQETDAQTKQTVLAFGAKVSRIETRL
HHHHHEECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
VHQETGSHATLNAAYLAGDGYHVDFTSHVRHGARACITRQATKGAVVNGGRGVFQGKFHV
HHHCCCCCEEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECEEEC
PRNAGQQTDASMQHNALLLEDGAEVFAKPELEILADDVQCAHGNTSGALDAAQLFYLRQR
CCCCCCCCCCCHHCCEEEEECCHHHHCCCCCEEEECCHHCCCCCCCCCHHHHHHHHHHHC
GIPLVQARAMLTEAFIAEALEDAGVHEDALRAQAQAWLSEV
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]