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The map label for this gene is ybbN [H]

Identifier: 114797202

GI number: 114797202

Start: 3683446

End: 3684333

Strand: Reverse

Name: ybbN [H]

Synonym: HNE_3547

Alternate gene names: 114797202

Gene position: 3684333-3683446 (Counterclockwise)

Preceding gene: 114797342

Following gene: 114798647

Centisome position: 99.44

GC content: 61.71

Gene sequence:

>888_bases
ATGAGCAACGCTGCGCTTCAGCACACCAAGGAAAGTACCGATCAGTCCTTCATGGCCGATGTTGTGGAAGCTTCCATGAC
CCAGCCGGTGATCGTTGACTTCTGGGCGCCCTGGTGCGGCCCGTGCCGCACGCTCGGCCCGATCATTGAAAAGGTCGTCG
AGAGCAAGAAGGGCGCGGTCAAGCTCGTCAAGATCAACACCGAAGAGCATCAGGCGTATGCCGGTCAGCTCGGTGTCCGC
TCGATCCCGGCAGTCTACGCCTTTGATAAAGGCCGCCCGGTCGATGGCTTTCTCGGCGCACTGCCCGAAAGCCAGGTCCG
CGCCTTCGTCGACAAGCTGCTCTCCGGCACGGACGACGCCCAAATGATCGCCGAAGCGCTCAGCCAGGCCGAAGCCGCCA
GCCAGCAGGGCGACATTGCCCTGGCAACTGAAATCTATTCCGCCGTGCTTCAGCAGGAACCGGAAAACATTGCCGCCATC
GCCGGCCTTGCCAGATGCCACCTCGCCAATGGGGACAAGGATCAGGCCGAAGCCACGCTCGCCCTGGTGCCCGAAGCCAA
GAAGAATGACTCCGTCATCAAGGGCGTGCGCCTCGCCATCGAAATGATGGCCGATGCGCCCCCGCCCAGCGAGCTCGACG
CAGCCCTCACCGCGGTCATGGCGTCGCCGGGCGATCACGACAAACGGTTTGAGCTGGCCGAACAATACGCCGCGGCCGGC
AAATATCAGGACGCGGTCGATCACCTGCTCATGATCCTGTCGGCCAAGCTCGACTGGGAAGGCGGCAAGGCAAAAGACAA
GCTGCTGAAGATCTTCGAAGCCGCTGGTCCGACCGAAGCCGTCACCATCGAAGGCCGCCGACGTCTTTCTTCTCTTATGT
TTGCATAA

Upstream 100 bases:

>100_bases
GGACAGGAGATTTTCACCTCGCCGCTGCGGCGCAGCGGCCACCCCGCTTGCGCTGGCGCAGCGGGCGTCCCATCTTTCCG
GCGAAACATAGGGAGTTTTT

Downstream 100 bases:

>100_bases
ACCCGAGGGCCCAGCCCGCGCCGGGCGAAAGGAAAATCAGATGGCGCCGTATCGCAAGACAGCCGACCTGCCTGCGACGC
TTGCCGTGTTTCCGCTCCCC

Product: putative thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MSNAALQHTKESTDQSFMADVVEASMTQPVIVDFWAPWCGPCRTLGPIIEKVVESKKGAVKLVKINTEEHQAYAGQLGVR
SIPAVYAFDKGRPVDGFLGALPESQVRAFVDKLLSGTDDAQMIAEALSQAEAASQQGDIALATEIYSAVLQQEPENIAAI
AGLARCHLANGDKDQAEATLALVPEAKKNDSVIKGVRLAIEMMADAPPPSELDAALTAVMASPGDHDKRFELAEQYAAAG
KYQDAVDHLLMILSAKLDWEGGKAKDKLLKIFEAAGPTEAVTIEGRRRLSSLMFA

Sequences:

>Translated_295_residues
MSNAALQHTKESTDQSFMADVVEASMTQPVIVDFWAPWCGPCRTLGPIIEKVVESKKGAVKLVKINTEEHQAYAGQLGVR
SIPAVYAFDKGRPVDGFLGALPESQVRAFVDKLLSGTDDAQMIAEALSQAEAASQQGDIALATEIYSAVLQQEPENIAAI
AGLARCHLANGDKDQAEATLALVPEAKKNDSVIKGVRLAIEMMADAPPPSELDAALTAVMASPGDHDKRFELAEQYAAAG
KYQDAVDHLLMILSAKLDWEGGKAKDKLLKIFEAAGPTEAVTIEGRRRLSSLMFA
>Mature_294_residues
SNAALQHTKESTDQSFMADVVEASMTQPVIVDFWAPWCGPCRTLGPIIEKVVESKKGAVKLVKINTEEHQAYAGQLGVRS
IPAVYAFDKGRPVDGFLGALPESQVRAFVDKLLSGTDDAQMIAEALSQAEAASQQGDIALATEIYSAVLQQEPENIAAIA
GLARCHLANGDKDQAEATLALVPEAKKNDSVIKGVRLAIEMMADAPPPSELDAALTAVMASPGDHDKRFELAEQYAAAGK
YQDAVDHLLMILSAKLDWEGGKAKDKLLKIFEAAGPTEAVTIEGRRRLSSLMFA

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=86, Percent_Identity=43.0232558139535, Blast_Score=81, Evalue=1e-15,
Organism=Escherichia coli, GI87081747, Length=283, Percent_Identity=28.9752650176678, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788936, Length=86, Percent_Identity=43.0232558139535, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082331, Length=99, Percent_Identity=35.3535353535354, Blast_Score=83, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI212646193, Length=101, Percent_Identity=39.6039603960396, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28573567, Length=100, Percent_Identity=32, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21358065, Length=83, Percent_Identity=39.7590361445783, Blast_Score=68, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31561; Mature: 31430

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNAALQHTKESTDQSFMADVVEASMTQPVIVDFWAPWCGPCRTLGPIIEKVVESKKGAV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCE
KLVKINTEEHQAYAGQLGVRSIPAVYAFDKGRPVDGFLGALPESQVRAFVDKLLSGTDDA
EEEEECCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHCCCCHH
QMIAEALSQAEAASQQGDIALATEIYSAVLQQEPENIAAIAGLARCHLANGDKDQAEATL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCEEE
ALVPEAKKNDSVIKGVRLAIEMMADAPPPSELDAALTAVMASPGDHDKRFELAEQYAAAG
EECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
KYQDAVDHLLMILSAKLDWEGGKAKDKLLKIFEAAGPTEAVTIEGRRRLSSLMFA
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCC
>Mature Secondary Structure 
SNAALQHTKESTDQSFMADVVEASMTQPVIVDFWAPWCGPCRTLGPIIEKVVESKKGAV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCE
KLVKINTEEHQAYAGQLGVRSIPAVYAFDKGRPVDGFLGALPESQVRAFVDKLLSGTDDA
EEEEECCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHCCCCHH
QMIAEALSQAEAASQQGDIALATEIYSAVLQQEPENIAAIAGLARCHLANGDKDQAEATL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCEEE
ALVPEAKKNDSVIKGVRLAIEMMADAPPPSELDAALTAVMASPGDHDKRFELAEQYAAAG
EECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
KYQDAVDHLLMILSAKLDWEGGKAKDKLLKIFEAAGPTEAVTIEGRRRLSSLMFA
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]