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The map label for this gene is exoD [H]

Identifier: 114797158

GI number: 114797158

Start: 3447492

End: 3448142

Strand: Direct

Name: exoD [H]

Synonym: HNE_3285

Alternate gene names: 114797158

Gene position: 3447492-3448142 (Clockwise)

Preceding gene: 114799193

Following gene: 114798128

Centisome position: 93.05

GC content: 61.14

Gene sequence:

>651_bases
GTGAACCGGCCGATAATACAAGACTTCCAGGATACGAGAGACCCGCTCCATGTCACCCTGGAGAAAACTCTGGAGTCAAT
CGACACGCCGACCATTTCCCTGCACCGCCTGTTCGATCTGATGGGGGAACAGGGCCTCTTGTTCCTGTGCGCCCTGCTCA
CCATCCCCTTCCTTCTGCCAATATCCATACCGGGGCTCAGCTCGGTGTTTGGTCCCGCGATCATCCTGATTGCTGCGGGG
ATTACCGCCAACCGCATGCCCTGGCTGCCCAGGCGGCTCGCCCGGAAAGAGTTCGACGCCGAAAAGCTCAAAGGCTCGCT
GAAACGCGGCCTCGGCGTAGTCGCCCGGATCGAGCGCTACATTCGCCCGCGCCTGAAAGGGCTCACGGCAACGGGCGTGC
CCGCGCGGGTCAATGGCGTGGCGCTGATCTTTTCTGCGCTGCTGCTGATGGCGCCCTTCGGGTTCATTCCCTTTTCAAAC
ACCCTGCCCGCCTATGCGATCCTGCTGATGTCCATCGGCATGTCCCAGCGCGATGGGCTGGTCGTGATAGTCGGTTATCT
GTTGATCCTTGCCACGCTGGTCTATCTCGGCGCCCTTGCCTGGCTTGCCACGCAGGCCGGTCAGGGCTTGTTTGGGTTTT
TCACCGCCTGA

Upstream 100 bases:

>100_bases
GCGGGCGGGCAAAGTCATAATTCGGCGTGTTTCGGCCGGCCTGCCCTTATTTTCCCGCATTTCCAGCCCCATCTGCCGGG
GTCAGGAGACAGGAGCGCAA

Downstream 100 bases:

>100_bases
CAGGATCTTCCGCCATGACGCGCGATACGCTGTTTCTTCTTCCGCCCGGCTTCGAAGCCAATGGCCAGCGCGAATTCTGC
CCGGAATGTGCCGAGATCTG

Product: ExoD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNRPIIQDFQDTRDPLHVTLEKTLESIDTPTISLHRLFDLMGEQGLLFLCALLTIPFLLPISIPGLSSVFGPAIILIAAG
ITANRMPWLPRRLARKEFDAEKLKGSLKRGLGVVARIERYIRPRLKGLTATGVPARVNGVALIFSALLLMAPFGFIPFSN
TLPAYAILLMSIGMSQRDGLVVIVGYLLILATLVYLGALAWLATQAGQGLFGFFTA

Sequences:

>Translated_216_residues
MNRPIIQDFQDTRDPLHVTLEKTLESIDTPTISLHRLFDLMGEQGLLFLCALLTIPFLLPISIPGLSSVFGPAIILIAAG
ITANRMPWLPRRLARKEFDAEKLKGSLKRGLGVVARIERYIRPRLKGLTATGVPARVNGVALIFSALLLMAPFGFIPFSN
TLPAYAILLMSIGMSQRDGLVVIVGYLLILATLVYLGALAWLATQAGQGLFGFFTA
>Mature_216_residues
MNRPIIQDFQDTRDPLHVTLEKTLESIDTPTISLHRLFDLMGEQGLLFLCALLTIPFLLPISIPGLSSVFGPAIILIAAG
ITANRMPWLPRRLARKEFDAEKLKGSLKRGLGVVARIERYIRPRLKGLTATGVPARVNGVALIFSALLLMAPFGFIPFSN
TLPAYAILLMSIGMSQRDGLVVIVGYLLILATLVYLGALAWLATQAGQGLFGFFTA

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 23545; Mature: 23545

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRPIIQDFQDTRDPLHVTLEKTLESIDTPTISLHRLFDLMGEQGLLFLCALLTIPFLLP
CCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ISIPGLSSVFGPAIILIAAGITANRMPWLPRRLARKEFDAEKLKGSLKRGLGVVARIERY
CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
IRPRLKGLTATGVPARVNGVALIFSALLLMAPFGFIPFSNTLPAYAILLMSIGMSQRDGL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
VVIVGYLLILATLVYLGALAWLATQAGQGLFGFFTA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure
MNRPIIQDFQDTRDPLHVTLEKTLESIDTPTISLHRLFDLMGEQGLLFLCALLTIPFLLP
CCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ISIPGLSSVFGPAIILIAAGITANRMPWLPRRLARKEFDAEKLKGSLKRGLGVVARIERY
CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
IRPRLKGLTATGVPARVNGVALIFSALLLMAPFGFIPFSNTLPAYAILLMSIGMSQRDGL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
VVIVGYLLILATLVYLGALAWLATQAGQGLFGFFTA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]