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The map label for this gene is yiaD [H]

Identifier: 114332359

GI number: 114332359

Start: 2516947

End: 2517609

Strand: Reverse

Name: yiaD [H]

Synonym: Neut_2403

Alternate gene names: 114332359

Gene position: 2517609-2516947 (Counterclockwise)

Preceding gene: 114332360

Following gene: 114332358

Centisome position: 94.61

GC content: 49.32

Gene sequence:

>663_bases
ATGTATAAAGCAATAGTAATAACAGCATCTTTGGTTGGATTTATTGTTTCTGGATGTGCCGACATGACCGCAACCCAGCG
AGGATCCGGCACAGGTGCATTGCTTGGCGCAGGCACAGGCGCAGCAATAGGAGCATTGGCCGGAGGTGGAAAAGGTGCCG
CGATTGGTGCCGGTGCTGGTGCTGCATTAGGAGCTGGTGCCGGTTATTTGTGGTCTAAAAGAATGGAAGAACAAAAAATT
CAGATGGAAAATGCCACTGCCGGTACAGGTGTGATGGTGTCGCAAACAGCAGATAATCGACTGATGTTGAACATCCCCAG
TGATATTTCATTTGATACAGGGAGTGCCCAGATCAAACCAGGTTTTCGTCCAATTTTGGACAGTTTTGCAACTAGTTTAT
TGAATAATCCCGGCACTCACGTAACTATCGTCGGGCACACCGACAATACTGGTAGCGATGCTGTCAACAATCCTCTATCC
GTAAATCGTGCGGCCAGTACGCGTGAATACCTGGCAGGTCGTGGCGTTCCTTTTCAGAGAATCCAGATTGATGGCCGCGG
CTCGTATCAGCCGGTTGCTTCGAATAATACCGCCGCAGGTCGAGCAAGAAATCGCAGGGTAGAGATCTACGTTTCGGAAA
CACGGGGTGGATCAGTTCAATAA

Upstream 100 bases:

>100_bases
TCAAATAACCAGACTGAAAGAAAAAATGATAGTTAATTATTTTTCCAATTACTTCTGTTACAGTACAACTAGATTTTCTT
TCAAAAAGAGAGGTGGATTT

Downstream 100 bases:

>100_bases
ATTGACCGGGGTGAGTGACTAATATTTATGGCTGATACAGAAAATACCAACAAGGAAAAATGGGAGAGAGAAACACTGCG
GGATTTGGTGTTTTCCTCTC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MYKAIVITASLVGFIVSGCADMTATQRGSGTGALLGAGTGAAIGALAGGGKGAAIGAGAGAALGAGAGYLWSKRMEEQKI
QMENATAGTGVMVSQTADNRLMLNIPSDISFDTGSAQIKPGFRPILDSFATSLLNNPGTHVTIVGHTDNTGSDAVNNPLS
VNRAASTREYLAGRGVPFQRIQIDGRGSYQPVASNNTAAGRARNRRVEIYVSETRGGSVQ

Sequences:

>Translated_220_residues
MYKAIVITASLVGFIVSGCADMTATQRGSGTGALLGAGTGAAIGALAGGGKGAAIGAGAGAALGAGAGYLWSKRMEEQKI
QMENATAGTGVMVSQTADNRLMLNIPSDISFDTGSAQIKPGFRPILDSFATSLLNNPGTHVTIVGHTDNTGSDAVNNPLS
VNRAASTREYLAGRGVPFQRIQIDGRGSYQPVASNNTAAGRARNRRVEIYVSETRGGSVQ
>Mature_220_residues
MYKAIVITASLVGFIVSGCADMTATQRGSGTGALLGAGTGAAIGALAGGGKGAAIGAGAGAALGAGAGYLWSKRMEEQKI
QMENATAGTGVMVSQTADNRLMLNIPSDISFDTGSAQIKPGFRPILDSFATSLLNNPGTHVTIVGHTDNTGSDAVNNPLS
VNRAASTREYLAGRGVPFQRIQIDGRGSYQPVASNNTAAGRARNRRVEIYVSETRGGSVQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=218, Percent_Identity=39.4495412844037, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787191, Length=121, Percent_Identity=34.7107438016529, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=33.6734693877551, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788957, Length=111, Percent_Identity=34.2342342342342, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22374; Mature: 22374

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKAIVITASLVGFIVSGCADMTATQRGSGTGALLGAGTGAAIGALAGGGKGAAIGAGAG
CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCCCCCCCEEECCCC
AALGAGAGYLWSKRMEEQKIQMENATAGTGVMVSQTADNRLMLNIPSDISFDTGSAQIKP
CHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCEECC
GFRPILDSFATSLLNNPGTHVTIVGHTDNTGSDAVNNPLSVNRAASTREYLAGRGVPFQR
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEE
IQIDGRGSYQPVASNNTAAGRARNRRVEIYVSETRGGSVQ
EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MYKAIVITASLVGFIVSGCADMTATQRGSGTGALLGAGTGAAIGALAGGGKGAAIGAGAG
CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCCCCCCCEEECCCC
AALGAGAGYLWSKRMEEQKIQMENATAGTGVMVSQTADNRLMLNIPSDISFDTGSAQIKP
CHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCEECC
GFRPILDSFATSLLNNPGTHVTIVGHTDNTGSDAVNNPLSVNRAASTREYLAGRGVPFQR
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEE
IQIDGRGSYQPVASNNTAAGRARNRRVEIYVSETRGGSVQ
EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]