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The map label for this gene is 114332179

Identifier: 114332179

GI number: 114332179

Start: 2347341

End: 2348057

Strand: Direct

Name: 114332179

Synonym: Neut_2218

Alternate gene names: NA

Gene position: 2347341-2348057 (Clockwise)

Preceding gene: 114332178

Following gene: 114332180

Centisome position: 88.21

GC content: 52.86

Gene sequence:

>717_bases
ATGCAACTGACTCAAATCCAGAAAATCATCGGTACCATTGTTCTTCAATCCGGCCTGCATATTGGTGCGGGCGACAGTGA
AATGCGTATCGGGGGAACCGACAGCCCGGTAGTCAAGGACCCGCTTACTGGTCAGCCTTATATTCCCGGCTCCTCATTGA
AAGGCAAAATCCGCAGCTTGCTGGAATGGCGTCACGGCCTGGTGCTGGCAGCGGGAGGTGCGCCTTATTCATTCAAACAG
CTTGCCCAGGATGAAAACAATTCCGCCGGGCGCGCTGTTATCAAACTATTTGGTGGTGCACCGGACAAGGCGGAAGATCA
GCTCGTCACCAGCATTGGTCCCACTCGCTTGGCTTTTTGGGATTGCCCGTTGAGCAACGATTGGAAAATAGAAGAAGTCG
ATTCCCGGAACTTGCTGATTACCGAAGTCAAGTCGGAGAACTCCATCAACCGTATTGCTGGTACAGCTGAAAGTCCGCGC
TTTATCGAACGGGTAATTGCTGGTGCATGCTTTGATTTCACCCTGACGCTCAAGGTATTGGCGGGTGATGATCTGCTTGA
TACCGTGCTACTTGGTCTGCGACTGCTGGAACTGGATAGCCTCGGCGGGTCCGGCTCGCGCGGCTACGGCAAGATCAAAT
TTGCGGCGCTGAAGCTCGACGGTACAGATTTGATGGAACAGTTTCACGCCATCATCCCATTCAATCAAACGGCTTGA

Upstream 100 bases:

>100_bases
CACTTTGAAGCCATGCTCGGATTTCTTAAGTTCTTCAAAAGAGATTAATTGTGCCCGTGACATCAACTTTCCAATTATTT
GTCGCCTAAAGGAATCCATC

Downstream 100 bases:

>100_bases
AACAATGACTCCACTGCGTGTAACTCTTCGGCTGCGTTCGCCACTGGGTACCCCGTTGGCGGGTGATACCTTGTTTGGTC
AGCTTTGTCATGCTGTCCGC

Product: CRISPR-associated RAMP Csm3 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MQLTQIQKIIGTIVLQSGLHIGAGDSEMRIGGTDSPVVKDPLTGQPYIPGSSLKGKIRSLLEWRHGLVLAAGGAPYSFKQ
LAQDENNSAGRAVIKLFGGAPDKAEDQLVTSIGPTRLAFWDCPLSNDWKIEEVDSRNLLITEVKSENSINRIAGTAESPR
FIERVIAGACFDFTLTLKVLAGDDLLDTVLLGLRLLELDSLGGSGSRGYGKIKFAALKLDGTDLMEQFHAIIPFNQTA

Sequences:

>Translated_238_residues
MQLTQIQKIIGTIVLQSGLHIGAGDSEMRIGGTDSPVVKDPLTGQPYIPGSSLKGKIRSLLEWRHGLVLAAGGAPYSFKQ
LAQDENNSAGRAVIKLFGGAPDKAEDQLVTSIGPTRLAFWDCPLSNDWKIEEVDSRNLLITEVKSENSINRIAGTAESPR
FIERVIAGACFDFTLTLKVLAGDDLLDTVLLGLRLLELDSLGGSGSRGYGKIKFAALKLDGTDLMEQFHAIIPFNQTA
>Mature_238_residues
MQLTQIQKIIGTIVLQSGLHIGAGDSEMRIGGTDSPVVKDPLTGQPYIPGSSLKGKIRSLLEWRHGLVLAAGGAPYSFKQ
LAQDENNSAGRAVIKLFGGAPDKAEDQLVTSIGPTRLAFWDCPLSNDWKIEEVDSRNLLITEVKSENSINRIAGTAESPR
FIERVIAGACFDFTLTLKVLAGDDLLDTVLLGLRLLELDSLGGSGSRGYGKIKFAALKLDGTDLMEQFHAIIPFNQTA

Specific function: Unknown

COG id: COG1337

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ1669 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013412
- InterPro:   IPR005537 [H]

Pfam domain/function: PF03787 RAMPs [H]

EC number: NA

Molecular weight: Translated: 25606; Mature: 25606

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLTQIQKIIGTIVLQSGLHIGAGDSEMRIGGTDSPVVKDPLTGQPYIPGSSLKGKIRSL
CCHHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LEWRHGLVLAAGGAPYSFKQLAQDENNSAGRAVIKLFGGAPDKAEDQLVTSIGPTRLAFW
HHHHCCEEEEECCCCHHHHHHHCCCCCCCHHEEHEEECCCCCCHHHHHHHHCCCCEEEEE
DCPLSNDWKIEEVDSRNLLITEVKSENSINRIAGTAESPRFIERVIAGACFDFTLTLKVL
ECCCCCCCEEEEECCCCEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHCEEEEEEEE
AGDDLLDTVLLGLRLLELDSLGGSGSRGYGKIKFAALKLDGTDLMEQFHAIIPFNQTA
ECCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQLTQIQKIIGTIVLQSGLHIGAGDSEMRIGGTDSPVVKDPLTGQPYIPGSSLKGKIRSL
CCHHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LEWRHGLVLAAGGAPYSFKQLAQDENNSAGRAVIKLFGGAPDKAEDQLVTSIGPTRLAFW
HHHHCCEEEEECCCCHHHHHHHCCCCCCCHHEEHEEECCCCCCHHHHHHHHCCCCEEEEE
DCPLSNDWKIEEVDSRNLLITEVKSENSINRIAGTAESPRFIERVIAGACFDFTLTLKVL
ECCCCCCCEEEEECCCCEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHCEEEEEEEE
AGDDLLDTVLLGLRLLELDSLGGSGSRGYGKIKFAALKLDGTDLMEQFHAIIPFNQTA
ECCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]