Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 114332092

GI number: 114332092

Start: 2255621

End: 2256430

Strand: Reverse

Name: ydaM [H]

Synonym: Neut_2127

Alternate gene names: 114332092

Gene position: 2256430-2255621 (Counterclockwise)

Preceding gene: 114332093

Following gene: 114332091

Centisome position: 84.79

GC content: 46.91

Gene sequence:

>810_bases
GTGCAGATTTCGGATGAGAAAAAGGTATTGCAGCTGGTCAAATCTTCGACTACAGGCAAAAAAAGAACCAGGGCTGAAGG
AAAGAGCCAGAAACTTGTAACCGGTGCAGATGAGTATAGTCAACAGGTTGAACAATACGCTCGTCGAATCCGGGAAACCA
GTGATGTAAACGAGATTATCGATATTCTGGATACAGTGCTGGGTGAAACCAAGAGTCTGCGTTACAGCAACGAAATATAT
AGCGCACAAGAACAGGTGCGGCTTGCTGAGAATCAGATCGAATCACTTAAGCTGGAGCTTGAACAGCTGCGGGAGCTCAT
CCATTACGATCCAATGACGGGGACATTCAACCGGCGCGGTCTGGATGCTGTTTATTTACGGGAGGCAGCACGTGCCGACC
GGAATGAAAATACATTATGTGCAGTTATGATTGATCTGGATAATTTCAAGTGTATTAATGATGCCTATGGCCACCAGTTC
GGTGATGATGTCCTGATTCATCTGGTAAAGCTGGCAAAAAAATCGCTACGACCAAGTGATGTGGTCGCCCGCTACGGTGG
TGAAGAGTTTGTCATATTGCTGCCGGATACCACCCTGGAATCAGCGGTTTGGGTGATGCAGCGCCTGCAGAATAGTTTCT
CCAAAAAAACGCTTCCAGACATGGATGGCAGTTCTGTTCCAATTGCTTTCAGTGGCGGTATTGCTTTTCGGCAGCTTCGC
GAAAGCCAGAAATCCTTACTAAAACGAGCGGATGAAGCGCTTTGTCAGGCCAAGAAATCCGGTAAAAATCGCATCATGAT
TGCCTCTTAA

Upstream 100 bases:

>100_bases
GCAAGGTTTTTCTAAATCCCGGTTGGCGCTCTTCTTAGGTGGCTTTCCGGATTTTTCCGGGTGATTACAACGATTGCGGT
ACCGTTTCAGGAGGATAATT

Downstream 100 bases:

>100_bases
TAGCAGATATTTAATGGAAAATGCTTTTTTGGGCAAGCAACCAATTCTGGATCGCAATCAGAAGTTGATCGCTTATGAGC
TCCTGTTTCGGACAGCAATG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MQISDEKKVLQLVKSSTTGKKRTRAEGKSQKLVTGADEYSQQVEQYARRIRETSDVNEIIDILDTVLGETKSLRYSNEIY
SAQEQVRLAENQIESLKLELEQLRELIHYDPMTGTFNRRGLDAVYLREAARADRNENTLCAVMIDLDNFKCINDAYGHQF
GDDVLIHLVKLAKKSLRPSDVVARYGGEEFVILLPDTTLESAVWVMQRLQNSFSKKTLPDMDGSSVPIAFSGGIAFRQLR
ESQKSLLKRADEALCQAKKSGKNRIMIAS

Sequences:

>Translated_269_residues
MQISDEKKVLQLVKSSTTGKKRTRAEGKSQKLVTGADEYSQQVEQYARRIRETSDVNEIIDILDTVLGETKSLRYSNEIY
SAQEQVRLAENQIESLKLELEQLRELIHYDPMTGTFNRRGLDAVYLREAARADRNENTLCAVMIDLDNFKCINDAYGHQF
GDDVLIHLVKLAKKSLRPSDVVARYGGEEFVILLPDTTLESAVWVMQRLQNSFSKKTLPDMDGSSVPIAFSGGIAFRQLR
ESQKSLLKRADEALCQAKKSGKNRIMIAS
>Mature_269_residues
MQISDEKKVLQLVKSSTTGKKRTRAEGKSQKLVTGADEYSQQVEQYARRIRETSDVNEIIDILDTVLGETKSLRYSNEIY
SAQEQVRLAENQIESLKLELEQLRELIHYDPMTGTFNRRGLDAVYLREAARADRNENTLCAVMIDLDNFKCINDAYGHQF
GDDVLIHLVKLAKKSLRPSDVVARYGGEEFVILLPDTTLESAVWVMQRLQNSFSKKTLPDMDGSSVPIAFSGGIAFRQLR
ESQKSLLKRADEALCQAKKSGKNRIMIAS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=191, Percent_Identity=36.1256544502618, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI145693134, Length=238, Percent_Identity=30.672268907563, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1786584, Length=190, Percent_Identity=33.6842105263158, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=31.7365269461078, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=34.1317365269461, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=32.7485380116959, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=31.0126582278481, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788381, Length=127, Percent_Identity=36.2204724409449, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=30.9677419354839, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788085, Length=177, Percent_Identity=29.3785310734463, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=30.1204819277108, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787056, Length=129, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081921, Length=184, Percent_Identity=27.1739130434783, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 30423; Mature: 30423

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQISDEKKVLQLVKSSTTGKKRTRAEGKSQKLVTGADEYSQQVEQYARRIRETSDVNEII
CCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHCCHHHHH
DILDTVLGETKSLRYSNEIYSAQEQVRLAENQIESLKLELEQLRELIHYDPMTGTFNRRG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LDAVYLREAARADRNENTLCAVMIDLDNFKCINDAYGHQFGDDVLIHLVKLAKKSLRPSD
CHHHHHHHHHHCCCCCCCEEEEEEECCCCEEHHHHHCCCCCHHHHHHHHHHHHHHCCHHH
VVARYGGEEFVILLPDTTLESAVWVMQRLQNSFSKKTLPDMDGSSVPIAFSGGIAFRQLR
HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHH
ESQKSLLKRADEALCQAKKSGKNRIMIAS
HHHHHHHHHHHHHHHHHHHCCCCEEEEEC
>Mature Secondary Structure
MQISDEKKVLQLVKSSTTGKKRTRAEGKSQKLVTGADEYSQQVEQYARRIRETSDVNEII
CCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHCCHHHHH
DILDTVLGETKSLRYSNEIYSAQEQVRLAENQIESLKLELEQLRELIHYDPMTGTFNRRG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LDAVYLREAARADRNENTLCAVMIDLDNFKCINDAYGHQFGDDVLIHLVKLAKKSLRPSD
CHHHHHHHHHHCCCCCCCEEEEEEECCCCEEHHHHHCCCCCHHHHHHHHHHHHHHCCHHH
VVARYGGEEFVILLPDTTLESAVWVMQRLQNSFSKKTLPDMDGSSVPIAFSGGIAFRQLR
HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHH
ESQKSLLKRADEALCQAKKSGKNRIMIAS
HHHHHHHHHHHHHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]