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The map label for this gene is rnk [H]

Identifier: 114332047

GI number: 114332047

Start: 2202788

End: 2203201

Strand: Reverse

Name: rnk [H]

Synonym: Neut_2081

Alternate gene names: 114332047

Gene position: 2203201-2202788 (Counterclockwise)

Preceding gene: 114332048

Following gene: 114332046

Centisome position: 82.79

GC content: 48.79

Gene sequence:

>414_bases
ATGAGTGTGAAACCAAAAATAATGATTTCTTCGCTTGATGCGGAGAGATTAGAAATGTTGCTGGATTCTCTTCCGCAGAG
TGTATTTCCAGGAAGAGATGATCTGGAAGCCGAGCTTGCGCGCGCTGACGTGGTGGACCCAGAGGAAATTCCGCCCACTG
TGGTCACAATGAACTCAACTGTCAGATTTAGGGTTGAGTCTTCGGCCGAGGAGTTTTGTCTGACGCTGGTCTATCCAAAG
GATGTCGATACTAGTGGCGAGAAGATCTCGATCCTTGCACCAGTAGGAAGTGCCCTGCTGGGACTTTCACAGGGAGATGA
AATTGAATGGCCAAAACCAGGCGGAGGGGTATTGCGTGTGCGTATTGTAGAAGTAACCTATCAGCCTGAGCGTTCCGGTG
AATATTATCGGTAA

Upstream 100 bases:

>100_bases
CCCATTGACAGTGCTGTTCCGGAAGAGTTGTTTTTTTTCAGGCAGTGAGGCTGTTTTCCGCAGTGATTCACGTGAACGAC
CAAATTAGAGGAATGTAAAA

Downstream 100 bases:

>100_bases
GTGAACATGCTGTTTTCTGGAATTCTTTTGTTCTTTGTATAAAACCAGTTATGAATAACCAGCCAGTGATTCTGGCAATC
GATCAGGGAACAACCAGCAC

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSVKPKIMISSLDAERLEMLLDSLPQSVFPGRDDLEAELARADVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPK
DVDTSGEKISILAPVGSALLGLSQGDEIEWPKPGGGVLRVRIVEVTYQPERSGEYYR

Sequences:

>Translated_137_residues
MSVKPKIMISSLDAERLEMLLDSLPQSVFPGRDDLEAELARADVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPK
DVDTSGEKISILAPVGSALLGLSQGDEIEWPKPGGGVLRVRIVEVTYQPERSGEYYR
>Mature_136_residues
SVKPKIMISSLDAERLEMLLDSLPQSVFPGRDDLEAELARADVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKD
VDTSGEKISILAPVGSALLGLSQGDEIEWPKPGGGVLRVRIVEVTYQPERSGEYYR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=132, Percent_Identity=47.7272727272727, Blast_Score=124, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15125; Mature: 14994

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKPKIMISSLDAERLEMLLDSLPQSVFPGRDDLEAELARADVVDPEEIPPTVVTMNST
CCCCCEEEEECCCHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCE
VRFRVESSAEEFCLTLVYPKDVDTSGEKISILAPVGSALLGLSQGDEIEWPKPGGGVLRV
EEEEECCCCCCEEEEEEECCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCEEEE
RIVEVTYQPERSGEYYR
EEEEEEECCCCCCCCCC
>Mature Secondary Structure 
SVKPKIMISSLDAERLEMLLDSLPQSVFPGRDDLEAELARADVVDPEEIPPTVVTMNST
CCCCEEEEECCCHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCE
VRFRVESSAEEFCLTLVYPKDVDTSGEKISILAPVGSALLGLSQGDEIEWPKPGGGVLRV
EEEEECCCCCCEEEEEEECCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCEEEE
RIVEVTYQPERSGEYYR
EEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]