Click here to switch to the map view.

The map label for this gene is ybaV [C]

Identifier: 114332039

GI number: 114332039

Start: 2194555

End: 2194839

Strand: Direct

Name: ybaV [C]

Synonym: Neut_2073

Alternate gene names: 114332039

Gene position: 2194555-2194839 (Clockwise)

Preceding gene: 114332029

Following gene: 114332051

Centisome position: 82.47

GC content: 38.95

Gene sequence:

>285_bases
ATGAAAAAAATTTTTTTGATTCTTGTAATATTTTTCGGGTTAAATTTATCCGTATTAGCTGGAGTAGACATCAATACAGC
AAGTCAAATTGATCTTGAGTCGGTAAAAGGTTTGGGGCCGGCCAAAGCAAAAGCGATAATTGAATATCGAGAAAAACACG
GTATGTTCAAGTCAGTAGGAGATCTAACCAATGTGAAGGGTATAGGTGTCGGGACGCTCAGACAATTAGGTGATCAGGTG
AGTGTTCAAGAGGAAACTGCTTCAAATGAAGCTGAGGCGCATTAA

Upstream 100 bases:

>100_bases
ATATTGATTTCTTGGCAGGAGAATCACAACCTGTCCAAAAAACATAAGTCAAATAACCAAAAGATTTTATTTTGTTAATT
TTCATATGGAGACTCAGAAG

Downstream 100 bases:

>100_bases
TTTAAAAATAGTGTCTTAGACATTATGTTTTAACCTGATGGTTAAGATTTATCGGGTAGTCAGCGCAGTATGATATAAGC
TGCCCGATAAATCCATACAG

Product: helix-hairpin-helix repeat-containing competence protein ComEA

Products: NA

Alternate protein names: Competence Protein ComEA Helix-Hairpin-Helix Region; DNA Transport Competence Protein; ComE Operon -Related Protein; Competence Protein ComEA; DNA poisomerase; Competence Protein CelA; DNA Transport Competence Protein ComEA; ComEA Protein; DNA Uptake Protein ComEA-Like Protein; Competence Protein Comea Helix-Hairpin-Helix Repeat Protein

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKKIFLILVIFFGLNLSVLAGVDINTASQIDLESVKGLGPAKAKAIIEYREKHGMFKSVGDLTNVKGIGVGTLRQLGDQV
SVQEETASNEAEAH

Sequences:

>Translated_94_residues
MKKIFLILVIFFGLNLSVLAGVDINTASQIDLESVKGLGPAKAKAIIEYREKHGMFKSVGDLTNVKGIGVGTLRQLGDQV
SVQEETASNEAEAH
>Mature_94_residues
MKKIFLILVIFFGLNLSVLAGVDINTASQIDLESVKGLGPAKAKAIIEYREKHGMFKSVGDLTNVKGIGVGTLRQLGDQV
SVQEETASNEAEAH

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10070; Mature: 10070

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIFLILVIFFGLNLSVLAGVDINTASQIDLESVKGLGPAKAKAIIEYREKHGMFKSVG
CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHH
DLTNVKGIGVGTLRQLGDQVSVQEETASNEAEAH
CCCCCCCCCHHHHHHCCCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MKKIFLILVIFFGLNLSVLAGVDINTASQIDLESVKGLGPAKAKAIIEYREKHGMFKSVG
CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHH
DLTNVKGIGVGTLRQLGDQVSVQEETASNEAEAH
CCCCCCCCCHHHHHHCCCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA