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The map label for this gene is yoaA [C]

Identifier: 114331213

GI number: 114331213

Start: 1270258

End: 1272204

Strand: Reverse

Name: yoaA [C]

Synonym: Neut_1215

Alternate gene names: 114331213

Gene position: 1272204-1270258 (Counterclockwise)

Preceding gene: 114331218

Following gene: 114331212

Centisome position: 47.81

GC content: 48.59

Gene sequence:

>1947_bases
ATGTCCGATTTGATGCCTGAATTGAGCACCATTTTTTCATCTAATGGCTTGCTCGCCCGCAATATACCAGACTATCGCTC
ACGCACCCAGCAGCTGGAGATGGCACAAGCTATCGCACACGCAATAGAGAACCAGGAAATTCTGGTTGCCGAAGCGGGTA
CAGGCACAGGAAAAACCTTTGCCTACCTGGTGCCGGCGTTATTGTCGGGAGGAAAAGTTATTTTATCCACCGGTACCAAG
ACATTGCAGGATCAGCTTTTCCAGCGTGATATCCCAACTATACGTGCTGCGCTGAAAGTCCCGGTAACGGTTGCACTATT
AAAGGGACGTGCCAATTATATCTGCCATTATCATCTTGAACGCACATTGAATTCGGATCACGCTCACTTTGCTAACCGTA
CTGAAGTAAAACATCTCAATCTGATTAAACGGTATGCCAATACCAGCAGCCACGGTGATAAAAGCGGGCTGGATAAGGTA
CCAGAACAGGCGGCCATCTGGCAGCATGTTACTTCCACGCGGGAAAACTGTCTGGGATCAGATTGTCCGCATTACCGACA
ATGCTTTGTTATGGAAGCGCGCAAACATGCATTGTTGGCAGATATGATTGTCGTTAATCATCACCTGTTCTTTGCGGATG
TCATGCTGCGTGATGAAGGATTGTCCGAGTTACTGCCCGCTTGTAATACCGTGATATTTGATGAAGCACATCAGTTACCG
GAAGTGGCCAGCCTGTTTTTTGGTGAATCAATCAGCACTGGCCAGATAGTGACTCTGGTGCGTGATATCCATACCGAGGC
TCTACTCGTTGCGCGGGAATTTACACCATTGTTTGATGCGCTGGCTGCGGCAGAAAAAGCTGCACTGGATATCCTGCCGA
CAATCACTGAAAAGCATGCGCGCCTCTCCTTCGCAACCGCCGCACAGCGGCCTGGATTCAGTGAGGCGCGGCAAGTACTA
CAGGAAAAACTGGTACAACTGGCTGATTTGCTTGAAACCCAGGCTGTTCGTTCTCAAGAATTACAAAACTGCTGGCTGCG
AGCACAAGCTATTCTGAACAAAATCAGACAATGGCACGAGCAATCCGAATCCGGCAAAATTATCAGCTGGATTGAGACCT
ACAGCCAAAGCTTGCAATTCAATACCACGCCTTTGTCTATCGCAGAAACATTCAGCAGGCAGCTCAATACCACAGCACGT
GCATGGATCTTTACCTCTGCTACGCTATCAGTCAAAAAGGATTTTTCCCATTACAATCGAATGATGGGGCTGGCTGAAGC
CAAAACCGCCAGCTGGGATAGCCCGTTTGATTTCCCTAATCAGGCACTGCTTTATGTGCCGACTCAGTTGCCTGATCCAA
ATACACCGAATTACACCGAGAGCATCATCCAGGCAGTGTTGCCGGTGATTAAGGCCAGCCGTGGGCGAGCATTCATTTTA
TGCACCAGTTTGCGCAACATGCAGCAGATCCATGAGTTACTGCAGGATGCGTTCGAGCAGGAGCAACTCGAATATCCGTT
ATTACTGCAAGGAGAAGAAACCCGCTCTGCCCTCCTGAATCAATTTCGTAAACTGGGCAATGCCGTCCTGGTGGGCAGCC
AATCTTTCTGGGAAGGTGTGGATGTACGCGGCCGCGCACTTTCACTGGTAATCATTGACCGGCTACCTTTTGCCTCACCA
GATGATCCGGTATTATCTGCCCGCATCGAAAAATATACGCAGGAAGGTCGTAATGCGTTTATGGAATACCAGCTGCCACA
TACTATTATCAATTTAAAACAGGGTGCTGGTCGGTTGATACGGGATGAGTATGATCGGGGAGTATTGATGATTTGTGATC
CGCGTCTGATATCCAAACCCTATGGCAAACGAATCTGGCAAAGTCTGCCACCAATGAAACGCACTCGTGATCTGGATGAA
GTAACACATTTTCTGGCTGCTGTTTAA

Upstream 100 bases:

>100_bases
ATCCAGGTAAAAACACAGTTACACTTTAAAGCAGGAAATACGTCAAAGAAGGACATTTCCACATATTTTGATTAATTCTT
TGTATAACTCGATTGTTCCA

Downstream 100 bases:

>100_bases
TGTCATTCCATTCCAATTGTTTATCTTTGTCGGACAGCACTATTTTTGGAGATATGCGATGACAACATTTAGGCGTGTTT
TTACCTTTGCAATTTTGCTG

Product: helicase c2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 648; Mature: 647

Protein sequence:

>648_residues
MSDLMPELSTIFSSNGLLARNIPDYRSRTQQLEMAQAIAHAIENQEILVAEAGTGTGKTFAYLVPALLSGGKVILSTGTK
TLQDQLFQRDIPTIRAALKVPVTVALLKGRANYICHYHLERTLNSDHAHFANRTEVKHLNLIKRYANTSSHGDKSGLDKV
PEQAAIWQHVTSTRENCLGSDCPHYRQCFVMEARKHALLADMIVVNHHLFFADVMLRDEGLSELLPACNTVIFDEAHQLP
EVASLFFGESISTGQIVTLVRDIHTEALLVAREFTPLFDALAAAEKAALDILPTITEKHARLSFATAAQRPGFSEARQVL
QEKLVQLADLLETQAVRSQELQNCWLRAQAILNKIRQWHEQSESGKIISWIETYSQSLQFNTTPLSIAETFSRQLNTTAR
AWIFTSATLSVKKDFSHYNRMMGLAEAKTASWDSPFDFPNQALLYVPTQLPDPNTPNYTESIIQAVLPVIKASRGRAFIL
CTSLRNMQQIHELLQDAFEQEQLEYPLLLQGEETRSALLNQFRKLGNAVLVGSQSFWEGVDVRGRALSLVIIDRLPFASP
DDPVLSARIEKYTQEGRNAFMEYQLPHTIINLKQGAGRLIRDEYDRGVLMICDPRLISKPYGKRIWQSLPPMKRTRDLDE
VTHFLAAV

Sequences:

>Translated_648_residues
MSDLMPELSTIFSSNGLLARNIPDYRSRTQQLEMAQAIAHAIENQEILVAEAGTGTGKTFAYLVPALLSGGKVILSTGTK
TLQDQLFQRDIPTIRAALKVPVTVALLKGRANYICHYHLERTLNSDHAHFANRTEVKHLNLIKRYANTSSHGDKSGLDKV
PEQAAIWQHVTSTRENCLGSDCPHYRQCFVMEARKHALLADMIVVNHHLFFADVMLRDEGLSELLPACNTVIFDEAHQLP
EVASLFFGESISTGQIVTLVRDIHTEALLVAREFTPLFDALAAAEKAALDILPTITEKHARLSFATAAQRPGFSEARQVL
QEKLVQLADLLETQAVRSQELQNCWLRAQAILNKIRQWHEQSESGKIISWIETYSQSLQFNTTPLSIAETFSRQLNTTAR
AWIFTSATLSVKKDFSHYNRMMGLAEAKTASWDSPFDFPNQALLYVPTQLPDPNTPNYTESIIQAVLPVIKASRGRAFIL
CTSLRNMQQIHELLQDAFEQEQLEYPLLLQGEETRSALLNQFRKLGNAVLVGSQSFWEGVDVRGRALSLVIIDRLPFASP
DDPVLSARIEKYTQEGRNAFMEYQLPHTIINLKQGAGRLIRDEYDRGVLMICDPRLISKPYGKRIWQSLPPMKRTRDLDE
VTHFLAAV
>Mature_647_residues
SDLMPELSTIFSSNGLLARNIPDYRSRTQQLEMAQAIAHAIENQEILVAEAGTGTGKTFAYLVPALLSGGKVILSTGTKT
LQDQLFQRDIPTIRAALKVPVTVALLKGRANYICHYHLERTLNSDHAHFANRTEVKHLNLIKRYANTSSHGDKSGLDKVP
EQAAIWQHVTSTRENCLGSDCPHYRQCFVMEARKHALLADMIVVNHHLFFADVMLRDEGLSELLPACNTVIFDEAHQLPE
VASLFFGESISTGQIVTLVRDIHTEALLVAREFTPLFDALAAAEKAALDILPTITEKHARLSFATAAQRPGFSEARQVLQ
EKLVQLADLLETQAVRSQELQNCWLRAQAILNKIRQWHEQSESGKIISWIETYSQSLQFNTTPLSIAETFSRQLNTTARA
WIFTSATLSVKKDFSHYNRMMGLAEAKTASWDSPFDFPNQALLYVPTQLPDPNTPNYTESIIQAVLPVIKASRGRAFILC
TSLRNMQQIHELLQDAFEQEQLEYPLLLQGEETRSALLNQFRKLGNAVLVGSQSFWEGVDVRGRALSLVIIDRLPFASPD
DPVLSARIEKYTQEGRNAFMEYQLPHTIINLKQGAGRLIRDEYDRGVLMICDPRLISKPYGKRIWQSLPPMKRTRDLDEV
THFLAAV

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=643, Percent_Identity=43.8569206842924, Blast_Score=519, Evalue=1e-148,
Organism=Escherichia coli, GI1787018, Length=285, Percent_Identity=31.2280701754386, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR001650
- InterPro:   IPR006935 [H]

Pfam domain/function: PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 72896; Mature: 72765

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLMPELSTIFSSNGLLARNIPDYRSRTQQLEMAQAIAHAIENQEILVAEAGTGTGKTF
CCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
AYLVPALLSGGKVILSTGTKTLQDQLFQRDIPTIRAALKVPVTVALLKGRANYICHYHLE
HHHHHHHHCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHCCHHEEECCCCCCEEEEEEHH
RTLNSDHAHFANRTEVKHLNLIKRYANTSSHGDKSGLDKVPEQAAIWQHVTSTRENCLGS
HHCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCC
DCPHYRQCFVMEARKHALLADMIVVNHHLFFADVMLRDEGLSELLPACNTVIFDEAHQLP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH
EVASLFFGESISTGQIVTLVRDIHTEALLVAREFTPLFDALAAAEKAALDILPTITEKHA
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSFATAAQRPGFSEARQVLQEKLVQLADLLETQAVRSQELQNCWLRAQAILNKIRQWHE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSESGKIISWIETYSQSLQFNTTPLSIAETFSRQLNTTARAWIFTSATLSVKKDFSHYNR
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHH
MMGLAEAKTASWDSPFDFPNQALLYVPTQLPDPNTPNYTESIIQAVLPVIKASRGRAFIL
HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
CTSLRNMQQIHELLQDAFEQEQLEYPLLLQGEETRSALLNQFRKLGNAVLVGSQSFWEGV
EHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCEEEECCHHHHCCC
DVRGRALSLVIIDRLPFASPDDPVLSARIEKYTQEGRNAFMEYQLPHTIINLKQGAGRLI
CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
RDEYDRGVLMICDPRLISKPYGKRIWQSLPPMKRTRDLDEVTHFLAAV
HHHCCCCEEEEECCHHHCCHHHHHHHHHCCCHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
SDLMPELSTIFSSNGLLARNIPDYRSRTQQLEMAQAIAHAIENQEILVAEAGTGTGKTF
CCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
AYLVPALLSGGKVILSTGTKTLQDQLFQRDIPTIRAALKVPVTVALLKGRANYICHYHLE
HHHHHHHHCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHCCHHEEECCCCCCEEEEEEHH
RTLNSDHAHFANRTEVKHLNLIKRYANTSSHGDKSGLDKVPEQAAIWQHVTSTRENCLGS
HHCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCC
DCPHYRQCFVMEARKHALLADMIVVNHHLFFADVMLRDEGLSELLPACNTVIFDEAHQLP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH
EVASLFFGESISTGQIVTLVRDIHTEALLVAREFTPLFDALAAAEKAALDILPTITEKHA
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSFATAAQRPGFSEARQVLQEKLVQLADLLETQAVRSQELQNCWLRAQAILNKIRQWHE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSESGKIISWIETYSQSLQFNTTPLSIAETFSRQLNTTARAWIFTSATLSVKKDFSHYNR
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHH
MMGLAEAKTASWDSPFDFPNQALLYVPTQLPDPNTPNYTESIIQAVLPVIKASRGRAFIL
HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
CTSLRNMQQIHELLQDAFEQEQLEYPLLLQGEETRSALLNQFRKLGNAVLVGSQSFWEGV
EHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCEEEECCHHHHCCC
DVRGRALSLVIIDRLPFASPDDPVLSARIEKYTQEGRNAFMEYQLPHTIINLKQGAGRLI
CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
RDEYDRGVLMICDPRLISKPYGKRIWQSLPPMKRTRDLDEVTHFLAAV
HHHCCCCEEEEECCHHHCCHHHHHHHHHCCCHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]