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The map label for this gene is rtcB [H]

Identifier: 114330884

GI number: 114330884

Start: 900338

End: 901510

Strand: Reverse

Name: rtcB [H]

Synonym: Neut_0880

Alternate gene names: 114330884

Gene position: 901510-900338 (Counterclockwise)

Preceding gene: 114330885

Following gene: 114330883

Centisome position: 33.88

GC content: 46.72

Gene sequence:

>1173_bases
ATGCACACTAATGGAAAAGCAATTATTACAACGGAAAAACTGCCAATAAAGCTGTGGTTGGAAGCCGATCAAATGGAGGA
GGGAGCGTTGGAGCAGGCGCGCAATCTTGCCAATTTGCCATTTGCCTTTAAGCATATCGCCATTATGCCCGACACTCACG
AAGGTTACGGCATGCCCATCGGGGCTATCCTAGCCACTAAGGGGGTCATCGTACCCAACGCCGTCGGTGTGGATATCGGC
TGCGGTATGTGTTCCCTACGGACCAATCTGACAGATATCTCAACAGAGGATCTGAAAACCATCATGAGTATCATCCGCAA
CACCATTCCGGTGGGTTTCAACCACCACAAAACGCAGCAAGATGAAGCTTGGATGCCCGAAAGGAAAGGCGATCTGCCTA
TCGTCAATCAAGAGTACGAAAGCGCCCTATATCAGATTGGCACATTAGGTGGCGGCAATCACTTTATCGAAATCCAAAAA
GGCTCAGATGGTTATATTTGGATTATGATCCACTCTGGCTCTCGCAATATCGGCTTTACAGTCGCCAACCATTACAATGA
TGTAGCAAAAGCATTAAATAAGGCAGCCGGCGAAGATATCTCGAATGACTTAGCCTACCTTCCAGAGTCATCTGAGTATT
TCGAACTGTACAAAAATGAAATGGACTACTGCCTTGAGTTTGCCCTAGCCAATCGAAAATTAATGATGGAGCGGGTAAAA
ACGGCATTTAGAGAGATTCGGCCTGAGGTTGGATTCAGCGAATTTATTAATAAACCACATAACTTTGCCGCCGAAGAAGA
ACATTTTGGCGAAACCGTTCTTGTTCATCGCAAAGGTGCAACACGAGCGCGAAAAGGTGAATGGGGCATGATTCCTGGCT
CGCAAGGTACCGGTTCCTTTCTGGTAAAAGGTAAAGGTGAAGCACAATCTTTCGAGTCTTGCGCACATGGTGCTGGACGC
ATTATGAGTCGTACCCAAGCCCGCAAAAAACTAGACCTAGAGGAAGAAATCCAAGCCCTTGATGATCTCGGTGTTTTACA
CGCCATCCGCGGCCGTAAAGATCTGGATGAAGCGCCAGGCTCTTATAAAGATATCGATGAAGTGATGAACCACCAAAAAG
ACTTGGTCGAGGTACAAATTGAATTGCAACCACTGGCTGTTATCAAGGGGTAA

Upstream 100 bases:

>100_bases
GCTCAATTCAGCTTAGGTAAATGTAAATGTTCTGTTTGTTTTCAGCTCGACCGACCAAACCTGACTCCGCTATCAATAAT
TATTATATGGAGATATTGTT

Downstream 100 bases:

>100_bases
CCCTCACACAAAAACAATTGGTAGTTGTTCAGTCGAACACAATTACACCTCCATCGGTATCAGTAAACGTGCGTTTCAAT
AATCGTTTTTCCATACTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MHTNGKAIITTEKLPIKLWLEADQMEEGALEQARNLANLPFAFKHIAIMPDTHEGYGMPIGAILATKGVIVPNAVGVDIG
CGMCSLRTNLTDISTEDLKTIMSIIRNTIPVGFNHHKTQQDEAWMPERKGDLPIVNQEYESALYQIGTLGGGNHFIEIQK
GSDGYIWIMIHSGSRNIGFTVANHYNDVAKALNKAAGEDISNDLAYLPESSEYFELYKNEMDYCLEFALANRKLMMERVK
TAFREIRPEVGFSEFINKPHNFAAEEEHFGETVLVHRKGATRARKGEWGMIPGSQGTGSFLVKGKGEAQSFESCAHGAGR
IMSRTQARKKLDLEEEIQALDDLGVLHAIRGRKDLDEAPGSYKDIDEVMNHQKDLVEVQIELQPLAVIKG

Sequences:

>Translated_390_residues
MHTNGKAIITTEKLPIKLWLEADQMEEGALEQARNLANLPFAFKHIAIMPDTHEGYGMPIGAILATKGVIVPNAVGVDIG
CGMCSLRTNLTDISTEDLKTIMSIIRNTIPVGFNHHKTQQDEAWMPERKGDLPIVNQEYESALYQIGTLGGGNHFIEIQK
GSDGYIWIMIHSGSRNIGFTVANHYNDVAKALNKAAGEDISNDLAYLPESSEYFELYKNEMDYCLEFALANRKLMMERVK
TAFREIRPEVGFSEFINKPHNFAAEEEHFGETVLVHRKGATRARKGEWGMIPGSQGTGSFLVKGKGEAQSFESCAHGAGR
IMSRTQARKKLDLEEEIQALDDLGVLHAIRGRKDLDEAPGSYKDIDEVMNHQKDLVEVQIELQPLAVIKG
>Mature_390_residues
MHTNGKAIITTEKLPIKLWLEADQMEEGALEQARNLANLPFAFKHIAIMPDTHEGYGMPIGAILATKGVIVPNAVGVDIG
CGMCSLRTNLTDISTEDLKTIMSIIRNTIPVGFNHHKTQQDEAWMPERKGDLPIVNQEYESALYQIGTLGGGNHFIEIQK
GSDGYIWIMIHSGSRNIGFTVANHYNDVAKALNKAAGEDISNDLAYLPESSEYFELYKNEMDYCLEFALANRKLMMERVK
TAFREIRPEVGFSEFINKPHNFAAEEEHFGETVLVHRKGATRARKGEWGMIPGSQGTGSFLVKGKGEAQSFESCAHGAGR
IMSRTQARKKLDLEEEIQALDDLGVLHAIRGRKDLDEAPGSYKDIDEVMNHQKDLVEVQIELQPLAVIKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=444, Percent_Identity=30.8558558558559, Blast_Score=157, Evalue=2e-38,
Organism=Escherichia coli, GI2367224, Length=411, Percent_Identity=42.3357664233577, Blast_Score=303, Evalue=1e-83,
Organism=Caenorhabditis elegans, GI17506665, Length=444, Percent_Identity=29.5045045045045, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24585217, Length=440, Percent_Identity=29.0909090909091, Blast_Score=137, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 43369; Mature: 43369

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTNGKAIITTEKLPIKLWLEADQMEEGALEQARNLANLPFAFKHIAIMPDTHEGYGMPI
CCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCEEHHEEEECCCCCCCCCCCH
GAILATKGVIVPNAVGVDIGCGMCSLRTNLTDISTEDLKTIMSIIRNTIPVGFNHHKTQQ
HHHHHCCCEECCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
DEAWMPERKGDLPIVNQEYESALYQIGTLGGGNHFIEIQKGSDGYIWIMIHSGSRNIGFT
CCCCCCCCCCCCCEECHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEE
VANHYNDVAKALNKAAGEDISNDLAYLPESSEYFELYKNEMDYCLEFALANRKLMMERVK
EHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAFREIRPEVGFSEFINKPHNFAAEEEHFGETVLVHRKGATRARKGEWGMIPGSQGTGSF
HHHHHHCCCCCHHHHHCCCCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCE
LVKGKGEAQSFESCAHGAGRIMSRTQARKKLDLEEEIQALDDLGVLHAIRGRKDLDEAPG
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHCCC
SYKDIDEVMNHQKDLVEVQIELQPLAVIKG
CHHHHHHHHHCCCCEEEEEEEEEEEEEECC
>Mature Secondary Structure
MHTNGKAIITTEKLPIKLWLEADQMEEGALEQARNLANLPFAFKHIAIMPDTHEGYGMPI
CCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCEEHHEEEECCCCCCCCCCCH
GAILATKGVIVPNAVGVDIGCGMCSLRTNLTDISTEDLKTIMSIIRNTIPVGFNHHKTQQ
HHHHHCCCEECCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
DEAWMPERKGDLPIVNQEYESALYQIGTLGGGNHFIEIQKGSDGYIWIMIHSGSRNIGFT
CCCCCCCCCCCCCEECHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEE
VANHYNDVAKALNKAAGEDISNDLAYLPESSEYFELYKNEMDYCLEFALANRKLMMERVK
EHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAFREIRPEVGFSEFINKPHNFAAEEEHFGETVLVHRKGATRARKGEWGMIPGSQGTGSF
HHHHHHCCCCCHHHHHCCCCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCE
LVKGKGEAQSFESCAHGAGRIMSRTQARKKLDLEEEIQALDDLGVLHAIRGRKDLDEAPG
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHCCC
SYKDIDEVMNHQKDLVEVQIELQPLAVIKG
CHHHHHHHHHCCCCEEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]